Wall clock time and date at job start Sun Mar 29 2020 22:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46954 * 292.85928 * 3 2 1 5 5 C 1.37102 * 119.99783 * 264.18797 * 4 3 2 6 6 H 1.08004 * 120.00074 * 199.46146 * 5 4 3 7 7 C 1.38949 * 120.00183 * 19.45752 * 5 4 3 8 8 N 1.31410 * 119.99632 * 21.94311 * 7 5 4 9 9 Si 1.86796 * 119.99990 * 201.94355 * 7 5 4 10 10 H 1.48496 * 109.47114 * 60.00071 * 9 7 5 11 11 H 1.48503 * 109.46897 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47222 * 299.99895 * 9 7 5 13 13 C 1.34773 * 120.00319 * 84.18622 * 4 3 2 14 14 O 1.21300 * 120.00227 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00148 * 0.02562 * 13 4 3 16 16 C 1.53776 * 113.61617 * 180.02562 * 15 13 4 17 17 C 1.53778 * 87.08482 * 139.98065 * 16 15 13 18 18 C 1.52992 * 113.61708 * 89.11177 * 17 16 15 19 19 O 1.42900 * 113.61460 * 219.93414 * 17 16 15 20 20 C 1.53780 * 87.07825 * 334.56530 * 17 16 15 21 21 H 4.40641 * 5.51313 * 179.97438 * 4 1 2 22 22 H 1.08996 * 109.47105 * 172.85781 * 3 2 1 23 23 H 1.08995 * 109.46808 * 52.85323 * 3 2 1 24 24 H 0.97004 * 119.99586 * 180.02562 * 8 7 5 25 25 H 1.08997 * 112.90708 * 48.74624 * 15 13 4 26 26 H 1.09003 * 113.61845 * 25.42869 * 16 15 13 27 27 H 1.09003 * 113.60995 * 254.52909 * 16 15 13 28 28 H 1.09005 * 109.46929 * 60.00460 * 18 17 16 29 29 H 1.09004 * 109.47332 * 300.00356 * 18 17 16 30 30 H 1.09003 * 109.47210 * 180.02562 * 18 17 16 31 31 H 0.96699 * 113.99712 * 178.46379 * 19 17 16 32 32 H 1.09004 * 113.61942 * 139.98191 * 20 17 16 33 33 H 1.09000 * 113.61692 * 270.88732 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.5357 1.2727 5 6 3.4760 0.3175 2.2902 6 1 4.1156 -0.0249 3.0903 7 6 2.9994 1.6226 2.2920 8 7 1.9194 1.9286 1.6087 9 14 3.8938 2.9423 3.2656 10 1 5.2857 3.0694 2.7642 11 1 3.1887 4.2393 3.1048 12 1 3.9174 2.5670 4.7022 13 6 3.2484 -1.8677 1.4435 14 8 3.6533 -2.3118 2.4971 15 6 2.8736 -2.8055 0.3249 16 6 3.0594 -4.2906 0.6778 17 6 1.7420 -4.5525 -0.0709 18 6 1.9300 -4.8289 -1.5639 19 8 0.9007 -5.5136 0.5698 20 6 1.3654 -3.0949 0.2430 21 1 -1.0499 0.0001 0.0002 22 1 3.0089 1.0205 -0.1278 23 1 3.0096 -0.6197 -0.8191 24 1 1.5868 2.8398 1.6097 25 1 3.3166 -2.5247 -0.6305 26 1 3.0023 -4.4960 1.7468 27 1 3.9289 -4.7464 0.2041 28 1 2.5586 -5.7100 -1.6939 29 1 2.4069 -3.9696 -2.0353 30 1 0.9585 -5.0039 -2.0262 31 1 0.0603 -5.6651 0.1160 32 1 0.8672 -2.5852 -0.5818 33 1 0.8452 -2.9732 1.1930 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491325840.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:09 Heat of formation + Delta-G solvation = 3.383783 kcal Electronic energy + Delta-G solvation = -17294.928091 eV Core-core repulsion = 14516.757860 eV Total energy + Delta-G solvation = -2778.170231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95430 -37.77711 -35.17542 -34.40974 -32.05150 -31.17913 -29.01324 -26.53114 -25.52378 -25.15890 -23.28414 -19.74830 -18.21464 -17.74787 -16.94505 -16.46533 -15.98806 -15.06383 -14.69176 -14.26987 -14.02771 -13.69588 -13.39804 -12.65138 -12.41872 -12.23578 -12.16583 -11.67732 -11.65368 -11.39724 -11.04019 -10.84525 -10.58155 -10.49155 -10.31542 -10.09876 -9.59765 -9.30014 -9.17299 -8.84300 -8.31098 -7.82542 -6.31056 -3.84497 3.18380 3.25660 3.29215 3.69812 3.91652 4.07331 4.19510 4.37565 4.79603 4.88725 4.94900 5.02045 5.13798 5.29450 5.49441 5.59598 5.69411 5.79446 5.87900 6.06098 6.13960 6.19486 6.34891 6.44393 6.56250 6.71130 6.79135 7.03830 7.58223 7.86362 8.09527 8.45524 8.84215 9.16474 9.38730 9.95689 10.69483 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036492 B = 0.007747 C = 0.006909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.100504 B = 3613.626174 C = 4051.927178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.106 4.106 3 C 0.234 3.766 4 N -0.439 5.439 5 C -0.318 4.318 6 H 0.102 0.898 7 C 0.032 3.968 8 N -0.861 5.861 9 Si 0.920 3.080 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.463 3.537 14 O -0.581 6.581 15 C -0.125 4.125 16 C -0.096 4.096 17 C 0.093 3.907 18 C -0.157 4.157 19 O -0.552 6.552 20 C -0.134 4.134 21 H 0.197 0.803 22 H 0.104 0.896 23 H 0.061 0.939 24 H 0.268 0.732 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.369 0.631 32 H 0.073 0.927 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.016 -6.481 -9.017 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.108 4.108 3 C 0.110 3.890 4 N -0.157 5.157 5 C -0.446 4.446 6 H 0.120 0.880 7 C -0.172 4.172 8 N -0.498 5.498 9 Si 0.746 3.254 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.252 3.748 14 O -0.465 6.465 15 C -0.147 4.147 16 C -0.133 4.133 17 C 0.052 3.948 18 C -0.215 4.215 19 O -0.357 6.357 20 C -0.172 4.172 21 H 0.214 0.786 22 H 0.122 0.878 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.216 0.784 32 H 0.091 0.909 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.387 -6.510 -8.095 10.480 hybrid contribution -0.535 1.044 0.010 1.173 sum -1.922 -5.466 -8.085 9.947 Atomic orbital electron populations 1.24188 0.95277 1.05409 1.03286 1.23080 0.94226 0.96136 0.97371 1.18186 0.84449 1.00575 0.85756 1.43668 1.56012 1.04050 1.11970 1.19607 1.28629 0.91313 1.05004 0.88001 1.25285 0.94978 0.98930 0.98016 1.70084 1.17855 1.20083 1.41786 0.86104 0.79556 0.79532 0.80174 1.19919 1.21079 1.19884 1.19792 0.83822 0.82603 0.88602 1.90514 1.50958 1.76116 1.28909 1.22356 0.97821 0.95441 0.99079 1.22903 0.94413 0.93610 1.02423 1.22776 0.92564 0.87566 0.91863 1.22128 1.02227 1.02646 0.94471 1.86595 1.32292 1.62675 1.54186 1.23534 0.95455 0.95275 1.02981 0.78594 0.87785 0.92094 0.92165 0.88372 0.88096 0.91246 0.91775 0.91052 0.92214 0.78400 0.90884 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.32 18.95 29.55 0.56 -4.76 16 2 C -0.11 -2.32 9.52 -37.12 -0.35 -2.68 16 3 C 0.23 5.10 4.91 -6.83 -0.03 5.07 16 4 N -0.44 -11.10 2.60 -117.93 -0.31 -11.41 16 5 C -0.32 -8.82 9.28 -14.93 -0.14 -8.96 16 6 H 0.10 2.98 7.42 -52.48 -0.39 2.59 16 7 C 0.03 0.85 4.83 -17.47 -0.08 0.76 16 8 N -0.86 -22.61 9.58 55.50 0.53 -22.08 16 9 Si 0.92 20.56 29.61 -169.99 -5.03 15.53 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.46 11.37 7.09 -10.99 -0.08 11.29 16 14 O -0.58 -16.43 15.56 5.54 0.09 -16.34 16 15 C -0.13 -2.34 2.65 -90.96 -0.24 -2.58 16 16 C -0.10 -1.67 6.82 -25.92 -0.18 -1.85 16 17 C 0.09 1.37 1.93 -89.81 -0.17 1.20 16 18 C -0.16 -1.76 9.33 37.15 0.35 -1.41 16 19 O -0.55 -8.17 13.49 -35.23 -0.48 -8.65 16 20 C -0.13 -2.31 5.80 -25.92 -0.15 -2.46 16 21 H 0.20 3.27 7.80 -54.10 -0.42 2.85 16 22 H 0.10 2.39 6.61 -51.93 -0.34 2.05 16 23 H 0.06 1.10 6.46 -51.93 -0.34 0.76 16 24 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 25 H 0.10 1.58 6.50 -51.93 -0.34 1.24 16 26 H 0.10 2.06 7.43 -51.93 -0.39 1.67 16 27 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.77 7.34 -51.93 -0.38 0.39 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.37 3.73 9.06 45.56 0.41 4.14 16 32 H 0.07 1.16 7.17 -51.93 -0.37 0.79 16 33 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 LS Contribution 279.85 15.07 4.22 4.22 Total: -1.00 -32.20 279.85 -4.88 -37.08 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.37 Total: 8.01 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.52 Total: -6.37 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.23 Total: -33.48 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.39 Total: -24.99 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.20 -4.88 -37.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491325840.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.465 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds