Wall clock time and date at job start Sun Mar 29 2020 22:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46954 * 292.85928 * 3 2 1 5 5 C 1.37102 * 119.99783 * 264.18797 * 4 3 2 6 6 H 1.08004 * 120.00074 * 199.46146 * 5 4 3 7 7 C 1.38949 * 120.00183 * 19.45752 * 5 4 3 8 8 N 1.31410 * 119.99632 * 21.94311 * 7 5 4 9 9 Si 1.86796 * 119.99990 * 201.94355 * 7 5 4 10 10 H 1.48496 * 109.47114 * 60.00071 * 9 7 5 11 11 H 1.48503 * 109.46897 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47222 * 299.99895 * 9 7 5 13 13 C 1.34773 * 120.00319 * 84.18622 * 4 3 2 14 14 O 1.21300 * 120.00227 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00148 * 0.02562 * 13 4 3 16 16 C 1.53776 * 113.61617 * 180.02562 * 15 13 4 17 17 C 1.53778 * 87.08482 * 139.98065 * 16 15 13 18 18 C 1.52992 * 113.61708 * 89.11177 * 17 16 15 19 19 O 1.42900 * 113.61460 * 219.93414 * 17 16 15 20 20 C 1.53780 * 87.07825 * 334.56530 * 17 16 15 21 21 H 4.40641 * 5.51313 * 179.97438 * 4 1 2 22 22 H 1.08996 * 109.47105 * 172.85781 * 3 2 1 23 23 H 1.08995 * 109.46808 * 52.85323 * 3 2 1 24 24 H 0.97004 * 119.99586 * 180.02562 * 8 7 5 25 25 H 1.08997 * 112.90708 * 48.74624 * 15 13 4 26 26 H 1.09003 * 113.61845 * 25.42869 * 16 15 13 27 27 H 1.09003 * 113.60995 * 254.52909 * 16 15 13 28 28 H 1.09005 * 109.46929 * 60.00460 * 18 17 16 29 29 H 1.09004 * 109.47332 * 300.00356 * 18 17 16 30 30 H 1.09003 * 109.47210 * 180.02562 * 18 17 16 31 31 H 0.96699 * 113.99712 * 178.46379 * 19 17 16 32 32 H 1.09004 * 113.61942 * 139.98191 * 20 17 16 33 33 H 1.09000 * 113.61692 * 270.88732 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.5357 1.2727 5 6 3.4760 0.3175 2.2902 6 1 4.1156 -0.0249 3.0903 7 6 2.9994 1.6226 2.2920 8 7 1.9194 1.9286 1.6087 9 14 3.8938 2.9423 3.2656 10 1 5.2857 3.0694 2.7642 11 1 3.1887 4.2393 3.1048 12 1 3.9174 2.5670 4.7022 13 6 3.2484 -1.8677 1.4435 14 8 3.6533 -2.3118 2.4971 15 6 2.8736 -2.8055 0.3249 16 6 3.0594 -4.2906 0.6778 17 6 1.7420 -4.5525 -0.0709 18 6 1.9300 -4.8289 -1.5639 19 8 0.9007 -5.5136 0.5698 20 6 1.3654 -3.0949 0.2430 21 1 -1.0499 0.0001 0.0002 22 1 3.0089 1.0205 -0.1278 23 1 3.0096 -0.6197 -0.8191 24 1 1.5868 2.8398 1.6097 25 1 3.3166 -2.5247 -0.6305 26 1 3.0023 -4.4960 1.7468 27 1 3.9289 -4.7464 0.2041 28 1 2.5586 -5.7100 -1.6939 29 1 2.4069 -3.9696 -2.0353 30 1 0.9585 -5.0039 -2.0262 31 1 0.0603 -5.6651 0.1160 32 1 0.8672 -2.5852 -0.5818 33 1 0.8452 -2.9732 1.1930 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491325840.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:08 Heat of formation + Delta-G solvation = -19.823824 kcal Electronic energy + Delta-G solvation = -17295.934449 eV Core-core repulsion = 14516.757860 eV Total energy + Delta-G solvation = -2779.176589 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.46372 -39.41488 -37.06136 -35.75449 -33.94146 -32.99233 -30.09277 -28.31838 -27.13239 -26.65734 -24.89816 -21.28785 -19.78556 -19.49418 -18.53718 -18.20921 -17.46773 -16.56389 -16.34404 -16.03003 -15.53926 -15.24019 -14.75998 -14.15530 -13.97003 -13.92087 -13.64114 -13.43990 -12.99524 -12.78348 -12.58546 -12.51493 -12.25636 -12.05401 -11.90350 -11.39413 -11.17604 -11.07734 -10.79017 -10.46165 -10.20398 -9.81080 -8.32058 -5.93964 1.36853 1.41245 1.50907 1.90401 2.16181 2.34826 2.44070 3.02430 3.08593 3.40724 3.57840 3.69508 3.84229 3.85874 3.94275 4.26999 4.39278 4.62521 4.74361 4.80187 4.87148 4.89486 4.95745 5.06521 5.20272 5.28385 5.45629 5.46451 5.47489 6.07465 6.46165 6.96215 7.15351 7.21359 7.43482 8.01588 8.65621 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036492 B = 0.007747 C = 0.006909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.100504 B = 3613.626174 C = 4051.927178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.144 4.144 3 C 0.235 3.765 4 N -0.449 5.449 5 C -0.360 4.360 6 H 0.070 0.930 7 C 0.006 3.994 8 N -0.867 5.867 9 Si 0.982 3.018 10 H -0.266 1.266 11 H -0.271 1.271 12 H -0.282 1.282 13 C 0.448 3.552 14 O -0.635 6.635 15 C -0.120 4.120 16 C -0.106 4.106 17 C 0.114 3.886 18 C -0.151 4.151 19 O -0.571 6.571 20 C -0.130 4.130 21 H 0.229 0.771 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.272 0.728 25 H 0.133 0.867 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.391 0.609 32 H 0.092 0.908 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.914 -6.501 -11.409 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.145 4.145 3 C 0.112 3.888 4 N -0.166 5.166 5 C -0.487 4.487 6 H 0.088 0.912 7 C -0.198 4.198 8 N -0.504 5.504 9 Si 0.805 3.195 10 H -0.190 1.190 11 H -0.196 1.196 12 H -0.208 1.208 13 C 0.238 3.762 14 O -0.523 6.523 15 C -0.142 4.142 16 C -0.144 4.144 17 C 0.073 3.927 18 C -0.208 4.208 19 O -0.380 6.380 20 C -0.168 4.168 21 H 0.245 0.755 22 H 0.106 0.894 23 H 0.118 0.882 24 H 0.082 0.918 25 H 0.151 0.849 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.242 0.758 32 H 0.111 0.889 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.319 -6.521 -10.535 12.605 hybrid contribution -0.330 1.052 0.804 1.364 sum -2.649 -5.469 -9.731 11.473 Atomic orbital electron populations 1.24995 0.96178 1.03781 1.01553 1.23245 0.94696 0.97649 0.98922 1.18282 0.84942 1.00346 0.85205 1.43890 1.55800 1.04297 1.12637 1.19506 1.30134 0.93005 1.06058 0.91234 1.25949 0.95245 0.99833 0.98789 1.70168 1.17876 1.20542 1.41767 0.85190 0.78900 0.77214 0.78151 1.19045 1.19570 1.20829 1.20864 0.82590 0.83105 0.89608 1.90465 1.53165 1.77077 1.31567 1.22431 0.99237 0.94423 0.98063 1.22910 0.97574 0.93243 1.00675 1.22630 0.90328 0.85884 0.93832 1.22119 1.04141 1.03609 0.90931 1.86546 1.33754 1.62262 1.55411 1.23449 0.93901 0.97824 1.01660 0.75475 0.89436 0.88192 0.91785 0.84901 0.92258 0.88851 0.90571 0.90075 0.89726 0.75842 0.88950 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.44 18.95 74.32 1.41 -8.03 16 2 C -0.14 -6.08 9.52 31.13 0.30 -5.79 16 3 C 0.23 10.10 4.91 84.57 0.42 10.52 16 4 N -0.45 -23.27 2.60 -645.41 -1.68 -24.95 16 5 C -0.36 -20.72 9.28 84.04 0.78 -19.94 16 6 H 0.07 4.35 7.42 -2.91 -0.02 4.33 16 7 C 0.01 0.31 4.83 84.93 0.41 0.72 16 8 N -0.87 -45.31 9.58 21.66 0.21 -45.10 16 9 Si 0.98 42.51 29.61 68.60 2.03 44.55 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 11 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 C 0.45 22.72 7.09 87.66 0.62 23.34 16 14 O -0.64 -38.13 15.56 -3.09 -0.05 -38.18 16 15 C -0.12 -4.40 2.65 -11.01 -0.03 -4.43 16 16 C -0.11 -3.65 6.82 31.12 0.21 -3.44 16 17 C 0.11 3.10 1.93 -10.27 -0.02 3.08 16 18 C -0.15 -2.68 9.33 71.98 0.67 -2.01 16 19 O -0.57 -15.85 13.49 -148.98 -2.01 -17.86 16 20 C -0.13 -4.30 5.80 31.12 0.18 -4.12 16 21 H 0.23 6.84 7.80 -4.42 -0.03 6.81 16 22 H 0.09 4.01 6.61 -2.39 -0.02 4.00 16 23 H 0.10 3.40 6.46 -2.39 -0.02 3.38 16 24 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 25 H 0.13 3.89 6.50 -2.39 -0.02 3.87 16 26 H 0.06 2.54 7.43 -2.39 -0.02 2.52 16 27 H 0.09 2.69 8.10 -2.39 -0.02 2.67 16 28 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.08 1.32 7.34 -2.39 -0.02 1.31 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.39 6.80 9.06 -74.06 -0.67 6.13 16 32 H 0.09 2.67 7.17 -2.39 -0.02 2.65 16 33 H 0.05 2.03 8.09 -2.39 -0.02 2.01 16 Total: -1.00 -73.48 279.85 3.90 -69.58 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.45 Total: 22.06 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 4.95 Total: -10.10 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -1.47 Total: -70.05 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: -2.06 Total: -56.04 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.55 kcal Total: -73.48 3.90 -69.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491325840.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.755 kcal (2) G-P(sol) polarization free energy of solvation -73.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds