Wall clock time and date at job start Sun Mar 29 2020 22:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46930 * 291.54531 * 3 2 1 5 5 C 1.37104 * 120.00247 * 96.98594 * 4 3 2 6 6 H 1.07998 * 119.99789 * 158.63758 * 5 4 3 7 7 C 1.38952 * 119.99674 * 338.36587 * 5 4 3 8 8 N 1.31416 * 119.99712 * 353.04550 * 7 5 4 9 9 Si 1.86796 * 119.99731 * 173.04606 * 7 5 4 10 10 H 1.48498 * 109.47212 * 60.00226 * 9 7 5 11 11 H 1.48507 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47393 * 299.99491 * 9 7 5 13 13 C 1.34780 * 120.00238 * 276.97921 * 4 3 2 14 14 O 1.21293 * 120.00124 * 175.17586 * 13 4 3 15 15 C 1.50697 * 119.99804 * 355.18193 * 13 4 3 16 16 H 1.09003 * 109.47391 * 52.09467 * 15 13 4 17 17 O 1.42898 * 109.47213 * 172.09860 * 15 13 4 18 18 C 1.53008 * 109.47147 * 292.09699 * 15 13 4 19 19 C 1.53780 * 113.61326 * 272.12428 * 18 15 13 20 20 C 1.53958 * 87.01666 * 220.04329 * 19 18 15 21 21 C 1.53778 * 113.61482 * 174.51583 * 18 15 13 22 22 H 4.40634 * 5.51380 * 180.02562 * 4 1 2 23 23 H 1.08998 * 109.46798 * 171.54618 * 3 2 1 24 24 H 1.09001 * 109.47166 * 51.54631 * 3 2 1 25 25 H 0.96997 * 119.99424 * 179.97438 * 8 7 5 26 26 H 0.96701 * 113.99677 * 60.00032 * 17 15 13 27 27 H 1.09002 * 112.84726 * 43.32271 * 18 15 13 28 28 H 1.08996 * 113.61600 * 334.56392 * 19 18 15 29 29 H 1.09005 * 113.61327 * 105.46963 * 19 18 15 30 30 H 1.08996 * 113.53982 * 270.81120 * 20 19 18 31 31 H 1.08998 * 113.73539 * 139.94278 * 20 19 18 32 32 H 1.09007 * 113.61371 * 254.53006 * 21 18 15 33 33 H 1.08999 * 113.61704 * 25.43335 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.5063 1.2847 5 6 3.4997 -1.8220 1.4083 6 1 4.1638 -2.1256 2.2041 7 6 3.0110 -2.7658 0.5132 8 7 2.0949 -2.4254 -0.3654 9 14 3.6562 -4.5182 0.5587 10 1 3.3817 -5.1122 1.8917 11 1 2.9797 -5.3221 -0.4909 12 1 5.1203 -4.5132 0.3108 13 6 3.2250 0.3206 2.3451 14 8 3.5455 -0.1172 3.4299 15 6 2.9279 1.7891 2.1830 16 1 1.9558 1.9126 1.7056 17 8 2.9113 2.4163 3.4668 18 6 4.0086 2.4352 1.3137 19 6 5.2267 2.9299 2.1114 20 6 5.2292 4.1624 1.1888 21 6 3.7276 3.9087 0.9752 22 1 -1.0499 -0.0002 0.0000 23 1 3.0088 1.0173 -0.1511 24 1 3.0096 -0.6383 -0.8048 25 1 1.7540 -3.0841 -0.9905 26 1 3.7461 2.3457 3.9498 27 1 4.2714 1.8302 0.4458 28 1 5.0015 3.1638 3.1519 29 1 6.1078 2.2979 1.9997 30 1 5.8271 4.0300 0.2872 31 1 5.4447 5.0973 1.7062 32 1 3.4002 4.0658 -0.0526 33 1 3.0918 4.4106 1.7044 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491664761.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:44 Heat of formation + Delta-G solvation = 6.441489 kcal Electronic energy + Delta-G solvation = -17427.518960 eV Core-core repulsion = 14649.481321 eV Total energy + Delta-G solvation = -2778.037639 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87191 -37.80164 -35.68380 -34.62523 -32.15577 -31.25656 -28.64894 -26.37443 -25.48999 -24.76220 -22.92897 -19.47561 -19.17862 -17.88318 -17.01409 -16.54356 -16.17289 -15.55548 -14.68148 -14.58614 -13.87769 -13.65603 -13.21150 -12.80176 -12.61187 -12.22728 -12.07429 -11.68142 -11.45328 -11.13867 -11.03314 -10.83494 -10.56532 -10.38254 -10.25642 -10.15348 -9.83595 -9.40484 -9.29757 -8.81566 -8.23836 -7.86853 -6.30703 -3.94182 3.15696 3.22734 3.25591 3.63100 3.85727 4.04160 4.15894 4.68801 4.76292 4.87997 4.90429 4.96964 5.08728 5.11646 5.43730 5.58730 5.80729 5.88916 5.90102 5.94341 6.01461 6.04168 6.19846 6.32452 6.46002 6.67254 6.85256 7.07443 7.51346 7.92953 8.09483 8.41114 8.79708 9.09948 9.31438 9.84860 10.67472 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.008433 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.636591 B = 3319.342263 C = 3619.646296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.111 4.111 3 C 0.220 3.780 4 N -0.437 5.437 5 C -0.308 4.308 6 H 0.100 0.900 7 C 0.029 3.971 8 N -0.875 5.875 9 Si 0.929 3.071 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.426 3.574 14 O -0.579 6.579 15 C 0.106 3.894 16 H 0.112 0.888 17 O -0.544 6.544 18 C -0.144 4.144 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.132 4.132 22 H 0.199 0.801 23 H 0.064 0.936 24 H 0.123 0.877 25 H 0.269 0.731 26 H 0.375 0.625 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 9.518 -2.478 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.113 4.113 3 C 0.097 3.903 4 N -0.157 5.157 5 C -0.436 4.436 6 H 0.118 0.882 7 C -0.174 4.174 8 N -0.514 5.514 9 Si 0.756 3.244 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.214 3.786 14 O -0.463 6.463 15 C 0.043 3.957 16 H 0.129 0.871 17 O -0.351 6.351 18 C -0.163 4.163 19 C -0.176 4.176 20 C -0.176 4.176 21 C -0.169 4.169 22 H 0.217 0.783 23 H 0.082 0.918 24 H 0.141 0.859 25 H 0.080 0.920 26 H 0.224 0.776 27 H 0.124 0.876 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.620 9.318 -2.264 9.941 hybrid contribution 0.332 -1.283 -0.076 1.327 sum 2.952 8.035 -2.340 8.874 Atomic orbital electron populations 1.24317 0.95444 1.06403 1.02369 1.23266 0.94435 0.95294 0.98275 1.18641 0.84218 0.97657 0.89808 1.43679 1.55583 1.09339 1.07095 1.19660 1.26558 0.82123 1.15219 0.88184 1.25374 0.95311 1.00065 0.96636 1.69946 1.26443 1.35008 1.20013 0.85947 0.78763 0.81608 0.78076 1.19892 1.20926 1.19892 1.20916 0.84219 0.88750 0.84667 1.90520 1.52772 1.77502 1.25513 1.21616 0.99666 0.90102 0.84343 0.87078 1.86491 1.40936 1.77506 1.30129 1.23402 0.96392 0.96582 0.99895 1.22942 0.98107 0.97506 0.99014 1.22784 0.96984 0.98046 0.99800 1.22926 0.96585 0.95737 1.01672 0.78350 0.91809 0.85911 0.92008 0.77552 0.87581 0.89744 0.91308 0.90393 0.91692 0.91548 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.60 19.25 29.55 0.57 -5.04 16 2 C -0.11 -2.51 10.87 -37.12 -0.40 -2.92 16 3 C 0.22 4.83 4.62 -6.83 -0.03 4.80 16 4 N -0.44 -10.98 2.61 -117.94 -0.31 -11.28 16 5 C -0.31 -8.43 9.31 -14.93 -0.14 -8.57 16 6 H 0.10 2.86 7.42 -52.49 -0.39 2.47 16 7 C 0.03 0.76 5.18 -17.46 -0.09 0.67 16 8 N -0.87 -22.76 8.95 55.50 0.50 -22.27 16 9 Si 0.93 20.61 29.56 -169.99 -5.02 15.58 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.43 10.42 6.89 -10.99 -0.08 10.34 16 14 O -0.58 -16.18 16.03 -14.24 -0.23 -16.41 16 15 C 0.11 2.04 2.63 -27.88 -0.07 1.96 16 16 H 0.11 2.18 7.11 -51.93 -0.37 1.81 16 17 O -0.54 -10.30 12.39 -55.02 -0.68 -10.98 16 18 C -0.14 -2.24 2.83 -89.81 -0.25 -2.49 16 19 C -0.14 -1.91 7.35 -25.83 -0.19 -2.10 16 20 C -0.14 -1.60 8.09 -25.83 -0.21 -1.81 16 21 C -0.13 -1.68 7.57 -25.92 -0.20 -1.88 16 22 H 0.20 3.41 7.80 -54.09 -0.42 2.98 16 23 H 0.06 1.17 4.53 -51.93 -0.24 0.94 16 24 H 0.12 2.86 6.19 -51.93 -0.32 2.54 16 25 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 26 H 0.37 6.36 6.57 45.56 0.30 6.66 16 27 H 0.11 1.69 5.91 -51.93 -0.31 1.39 16 28 H 0.08 1.12 5.86 -51.93 -0.30 0.82 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.09 1.13 7.98 -51.93 -0.41 0.71 16 LS Contribution 275.69 15.07 4.15 4.15 Total: -1.00 -31.09 275.69 -5.97 -37.06 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -3.29 Total: 11.16 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.09 Total: -7.02 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.19 Total: -33.55 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.91 Total: -27.39 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.09 -5.97 -37.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491664761.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.506 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds