Wall clock time and date at job start Sun Mar 29 2020 22:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46930 * 291.54531 * 3 2 1 5 5 C 1.37104 * 120.00247 * 96.98594 * 4 3 2 6 6 H 1.07998 * 119.99789 * 158.63758 * 5 4 3 7 7 C 1.38952 * 119.99674 * 338.36587 * 5 4 3 8 8 N 1.31416 * 119.99712 * 353.04550 * 7 5 4 9 9 Si 1.86796 * 119.99731 * 173.04606 * 7 5 4 10 10 H 1.48498 * 109.47212 * 60.00226 * 9 7 5 11 11 H 1.48507 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47393 * 299.99491 * 9 7 5 13 13 C 1.34780 * 120.00238 * 276.97921 * 4 3 2 14 14 O 1.21293 * 120.00124 * 175.17586 * 13 4 3 15 15 C 1.50697 * 119.99804 * 355.18193 * 13 4 3 16 16 H 1.09003 * 109.47391 * 52.09467 * 15 13 4 17 17 O 1.42898 * 109.47213 * 172.09860 * 15 13 4 18 18 C 1.53008 * 109.47147 * 292.09699 * 15 13 4 19 19 C 1.53780 * 113.61326 * 272.12428 * 18 15 13 20 20 C 1.53958 * 87.01666 * 220.04329 * 19 18 15 21 21 C 1.53778 * 113.61482 * 174.51583 * 18 15 13 22 22 H 4.40634 * 5.51380 * 180.02562 * 4 1 2 23 23 H 1.08998 * 109.46798 * 171.54618 * 3 2 1 24 24 H 1.09001 * 109.47166 * 51.54631 * 3 2 1 25 25 H 0.96997 * 119.99424 * 179.97438 * 8 7 5 26 26 H 0.96701 * 113.99677 * 60.00032 * 17 15 13 27 27 H 1.09002 * 112.84726 * 43.32271 * 18 15 13 28 28 H 1.08996 * 113.61600 * 334.56392 * 19 18 15 29 29 H 1.09005 * 113.61327 * 105.46963 * 19 18 15 30 30 H 1.08996 * 113.53982 * 270.81120 * 20 19 18 31 31 H 1.08998 * 113.73539 * 139.94278 * 20 19 18 32 32 H 1.09007 * 113.61371 * 254.53006 * 21 18 15 33 33 H 1.08999 * 113.61704 * 25.43335 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.5063 1.2847 5 6 3.4997 -1.8220 1.4083 6 1 4.1638 -2.1256 2.2041 7 6 3.0110 -2.7658 0.5132 8 7 2.0949 -2.4254 -0.3654 9 14 3.6562 -4.5182 0.5587 10 1 3.3817 -5.1122 1.8917 11 1 2.9797 -5.3221 -0.4909 12 1 5.1203 -4.5132 0.3108 13 6 3.2250 0.3206 2.3451 14 8 3.5455 -0.1172 3.4299 15 6 2.9279 1.7891 2.1830 16 1 1.9558 1.9126 1.7056 17 8 2.9113 2.4163 3.4668 18 6 4.0086 2.4352 1.3137 19 6 5.2267 2.9299 2.1114 20 6 5.2292 4.1624 1.1888 21 6 3.7276 3.9087 0.9752 22 1 -1.0499 -0.0002 0.0000 23 1 3.0088 1.0173 -0.1511 24 1 3.0096 -0.6383 -0.8048 25 1 1.7540 -3.0841 -0.9905 26 1 3.7461 2.3457 3.9498 27 1 4.2714 1.8302 0.4458 28 1 5.0015 3.1638 3.1519 29 1 6.1078 2.2979 1.9997 30 1 5.8271 4.0300 0.2872 31 1 5.4447 5.0973 1.7062 32 1 3.4002 4.0658 -0.0526 33 1 3.0918 4.4106 1.7044 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491664761.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:43 Heat of formation + Delta-G solvation = -13.317696 kcal Electronic energy + Delta-G solvation = -17428.375783 eV Core-core repulsion = 14649.481321 eV Total energy + Delta-G solvation = -2778.894462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.40626 -39.34713 -37.41098 -36.28345 -34.06281 -33.08085 -30.19982 -28.15325 -26.67952 -26.40650 -24.33712 -21.25015 -20.32629 -19.68896 -18.78723 -18.12380 -17.82221 -16.98648 -16.48189 -16.10856 -15.65043 -15.16489 -14.85124 -14.26632 -14.20530 -14.03951 -13.35847 -13.19536 -12.88978 -12.84254 -12.62934 -12.54815 -12.19279 -12.06637 -11.44199 -11.38504 -11.27420 -11.06714 -11.05503 -10.57797 -10.06827 -9.83216 -8.29134 -6.01329 1.36363 1.39969 1.49596 1.81826 2.07696 2.29880 2.35599 3.05127 3.08051 3.37470 3.63334 3.71536 3.76319 3.89131 3.98306 4.16727 4.34532 4.57426 4.61968 4.83914 4.90395 4.94157 5.06353 5.10811 5.14968 5.35291 5.40861 5.42789 5.61576 6.01470 6.39859 6.59578 7.09201 7.10988 7.37070 7.90755 8.65610 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.008433 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.636591 B = 3319.342263 C = 3619.646296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.154 4.154 3 C 0.223 3.777 4 N -0.445 5.445 5 C -0.346 4.346 6 H 0.074 0.926 7 C -0.001 4.001 8 N -0.881 5.881 9 Si 0.989 3.011 10 H -0.283 1.283 11 H -0.271 1.271 12 H -0.264 1.264 13 C 0.413 3.587 14 O -0.627 6.627 15 C 0.119 3.881 16 H 0.111 0.889 17 O -0.549 6.549 18 C -0.151 4.151 19 C -0.145 4.145 20 C -0.123 4.123 21 C -0.122 4.122 22 H 0.234 0.766 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.272 0.728 26 H 0.382 0.618 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 10.588 -3.629 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.156 4.156 3 C 0.102 3.898 4 N -0.164 5.164 5 C -0.474 4.474 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.518 5.518 9 Si 0.813 3.187 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.189 1.189 13 C 0.203 3.797 14 O -0.515 6.515 15 C 0.057 3.943 16 H 0.128 0.872 17 O -0.356 6.356 18 C -0.170 4.170 19 C -0.182 4.182 20 C -0.160 4.160 21 C -0.159 4.159 22 H 0.250 0.750 23 H 0.116 0.884 24 H 0.124 0.876 25 H 0.083 0.917 26 H 0.233 0.767 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.418 10.414 -3.452 11.235 hybrid contribution 0.331 -1.631 0.299 1.691 sum 2.749 8.783 -3.153 9.728 Atomic orbital electron populations 1.25211 0.96460 1.04754 1.00541 1.23595 0.95177 0.96860 0.99937 1.18675 0.84438 0.98977 0.87753 1.43864 1.55281 1.08853 1.08409 1.19618 1.27996 0.84006 1.15794 0.90802 1.26061 0.95202 1.03213 0.95814 1.70067 1.26163 1.35952 1.19657 0.85056 0.78805 0.77139 0.77672 1.20889 1.19531 1.18901 1.21915 0.83053 0.90912 0.83821 1.90469 1.54859 1.78911 1.27241 1.21513 1.00894 0.86702 0.85238 0.87182 1.86459 1.41818 1.76985 1.30342 1.23433 0.96127 0.98062 0.99360 1.23024 0.96861 0.98717 0.99609 1.22740 0.96038 0.97545 0.99659 1.22903 0.97678 0.92739 1.02609 0.74963 0.88379 0.87608 0.91739 0.76661 0.88159 0.89469 0.92090 0.89139 0.89779 0.89912 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.12 19.25 74.32 1.43 -8.69 16 2 C -0.15 -6.87 10.87 31.12 0.34 -6.53 16 3 C 0.22 9.86 4.62 84.57 0.39 10.25 16 4 N -0.45 -22.89 2.61 -645.43 -1.68 -24.57 16 5 C -0.35 -19.57 9.31 84.04 0.78 -18.78 16 6 H 0.07 4.45 7.42 -2.91 -0.02 4.43 16 7 C 0.00 -0.03 5.18 84.93 0.44 0.41 16 8 N -0.88 -45.62 8.95 21.66 0.19 -45.42 16 9 Si 0.99 42.38 29.56 68.60 2.03 44.41 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 13 C 0.41 20.70 6.89 87.66 0.60 21.31 16 14 O -0.63 -36.46 16.03 15.85 0.25 -36.20 16 15 C 0.12 4.57 2.63 29.85 0.08 4.65 16 16 H 0.11 4.24 7.11 -2.39 -0.02 4.22 16 17 O -0.55 -20.53 12.39 -130.06 -1.61 -22.14 16 18 C -0.15 -4.50 2.83 -10.27 -0.03 -4.53 16 19 C -0.14 -3.78 7.35 31.18 0.23 -3.56 16 20 C -0.12 -2.43 8.09 31.18 0.25 -2.18 16 21 C -0.12 -2.76 7.57 31.12 0.24 -2.52 16 22 H 0.23 7.27 7.80 -4.42 -0.03 7.23 16 23 H 0.10 3.55 4.53 -2.39 -0.01 3.53 16 24 H 0.11 4.99 6.19 -2.39 -0.01 4.98 16 25 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 26 H 0.38 12.96 6.57 -74.06 -0.49 12.48 16 27 H 0.10 3.10 5.91 -2.39 -0.01 3.08 16 28 H 0.09 2.21 5.86 -2.39 -0.01 2.20 16 29 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.09 1.99 7.98 -2.39 -0.02 1.98 16 Total: -1.00 -67.89 275.69 4.57 -63.31 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.64 Total: 30.80 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 4.75 Total: -10.18 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -1.49 Total: -69.99 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -1.36 Total: -58.34 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -67.89 4.57 -63.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491664761.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.996 kcal (2) G-P(sol) polarization free energy of solvation -67.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds