Wall clock time and date at job start Sun Mar 29 2020 22:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17412 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47010 * 40.09301 * 3 2 1 5 5 C 1.37104 * 119.99744 * 265.07757 * 4 3 2 6 6 H 1.07997 * 119.99768 * 146.36054 * 5 4 3 7 7 C 1.38950 * 120.00087 * 326.36701 * 5 4 3 8 8 N 1.31405 * 120.00022 * 157.25468 * 7 5 4 9 9 Si 1.86803 * 120.00067 * 337.24950 * 7 5 4 10 10 H 1.48494 * 109.47060 * 94.66230 * 9 7 5 11 11 H 1.48496 * 109.47017 * 214.66953 * 9 7 5 12 12 H 1.48512 * 109.46844 * 334.66399 * 9 7 5 13 13 C 1.34772 * 120.00299 * 85.08415 * 4 3 2 14 14 O 1.21293 * 120.00009 * 185.20606 * 13 4 3 15 15 C 1.50700 * 120.00013 * 5.21177 * 13 4 3 16 16 H 1.09001 * 109.47240 * 312.07322 * 15 13 4 17 17 O 1.42898 * 109.47341 * 192.07692 * 15 13 4 18 18 C 1.53001 * 109.47167 * 72.07240 * 15 13 4 19 19 C 1.53782 * 113.61291 * 81.79119 * 18 15 13 20 20 C 1.53781 * 87.08074 * 139.97905 * 19 18 15 21 21 C 1.53782 * 87.08208 * 334.56500 * 20 19 18 22 22 H 4.40634 * 5.51367 * 180.02562 * 4 1 2 23 23 H 1.08996 * 109.47005 * 280.08874 * 3 2 1 24 24 H 1.09004 * 109.46639 * 160.09045 * 3 2 1 25 25 H 0.96998 * 120.00344 * 179.97438 * 8 7 5 26 26 H 0.96699 * 113.99714 * 299.99660 * 17 15 13 27 27 H 1.09000 * 112.91027 * 310.53926 * 18 15 13 28 28 H 1.08995 * 113.61458 * 254.52792 * 19 18 15 29 29 H 1.09006 * 113.61200 * 25.43072 * 19 18 15 30 30 H 1.09004 * 113.61254 * 220.01905 * 20 19 18 31 31 H 1.09001 * 113.68862 * 89.13092 * 20 19 18 32 32 H 1.08997 * 113.61510 * 270.88262 * 21 20 19 33 33 H 1.08994 * 113.60991 * 139.97985 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.0557 -0.8895 5 6 3.4599 -2.2859 -0.3789 6 1 3.2947 -3.1759 -0.9680 7 6 4.0018 -2.3876 0.8966 8 7 3.9045 -3.5155 1.5638 9 14 4.8688 -0.9210 1.6627 10 1 3.9097 -0.1649 2.5074 11 1 5.9988 -1.3963 2.5007 12 1 5.3871 -0.0359 0.5887 13 6 3.2651 -0.8184 -2.2098 14 8 3.5788 -1.7185 -2.9598 15 6 3.0210 0.5655 -2.7542 16 1 2.0846 0.9537 -2.3535 17 8 2.9420 0.5094 -4.1799 18 6 4.1721 1.4857 -2.3430 19 6 5.4101 1.3653 -3.2473 20 6 5.5404 2.8938 -3.1392 21 6 4.0274 2.9246 -2.8659 22 1 -1.0497 -0.0001 -0.0004 23 1 3.0095 -0.1792 1.0117 24 1 3.0089 0.9671 -0.3500 25 1 4.2831 -3.5866 2.4540 26 1 3.7424 0.1726 -4.6052 27 1 4.4015 1.4288 -1.2789 28 1 6.2360 0.8231 -2.7869 29 1 5.1827 1.0166 -4.2547 30 1 5.8249 3.3750 -4.0750 31 1 6.1438 3.2232 -2.2934 32 1 3.4220 3.0022 -3.7690 33 1 3.7371 3.6412 -2.0977 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491664762.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:46 Heat of formation + Delta-G solvation = 9.957386 kcal Electronic energy + Delta-G solvation = -17495.084233 eV Core-core repulsion = 14717.199054 eV Total energy + Delta-G solvation = -2777.885179 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06261 -38.02122 -35.86194 -34.83505 -32.71529 -31.68318 -28.93434 -26.81638 -25.58079 -25.06100 -22.97671 -19.43653 -19.28226 -18.57382 -16.97294 -16.81037 -16.29808 -16.02529 -15.44455 -14.48531 -14.19391 -13.71847 -13.27734 -13.12683 -12.92890 -12.64891 -12.26054 -12.21515 -11.81319 -11.33421 -11.04220 -10.93903 -10.83894 -10.44142 -10.34205 -10.19438 -9.93310 -9.80551 -9.54728 -9.20024 -8.41450 -7.98390 -6.47357 -4.02010 2.90993 3.09753 3.10141 3.11791 3.30154 3.55565 4.03994 4.36157 4.63488 4.67096 4.73736 4.80374 4.86145 4.94125 5.05516 5.41968 5.47860 5.65888 5.75082 5.79413 5.81899 5.86243 5.95239 5.96295 6.13091 6.33210 6.35812 6.56569 7.40869 7.86371 8.04934 8.18335 8.39139 8.85217 9.21723 9.60923 10.64787 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.010261 C = 0.009438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.237408 B = 2728.165142 C = 2966.000815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.182 4.182 3 C 0.184 3.816 4 N -0.458 5.458 5 C -0.319 4.319 6 H 0.109 0.891 7 C 0.060 3.940 8 N -0.857 5.857 9 Si 0.865 3.135 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.259 1.259 13 C 0.447 3.553 14 O -0.554 6.554 15 C 0.100 3.900 16 H 0.111 0.889 17 O -0.543 6.543 18 C -0.145 4.145 19 C -0.136 4.136 20 C -0.140 4.140 21 C -0.130 4.130 22 H 0.215 0.785 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.275 0.725 26 H 0.377 0.623 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 13.748 -3.528 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.183 4.183 3 C 0.062 3.938 4 N -0.180 5.180 5 C -0.446 4.446 6 H 0.127 0.873 7 C -0.146 4.146 8 N -0.493 5.493 9 Si 0.692 3.308 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.183 1.183 13 C 0.235 3.765 14 O -0.435 6.435 15 C 0.037 3.963 16 H 0.129 0.871 17 O -0.349 6.349 18 C -0.164 4.164 19 C -0.174 4.174 20 C -0.177 4.177 21 C -0.168 4.168 22 H 0.232 0.768 23 H 0.114 0.886 24 H 0.108 0.892 25 H 0.086 0.914 26 H 0.227 0.773 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.024 13.370 -3.651 13.860 hybrid contribution 0.734 0.329 0.790 1.128 sum 0.710 13.699 -2.861 14.013 Atomic orbital electron populations 1.24762 0.95683 1.01214 1.01125 1.23698 0.94845 0.99730 1.00062 1.19090 0.84308 0.92922 0.97530 1.43692 1.56839 1.12141 1.05312 1.19099 1.41156 0.83860 1.00515 0.87300 1.25299 0.96432 0.96867 0.96005 1.69761 1.41207 1.26583 1.11707 0.87174 0.80322 0.83465 0.79825 1.19920 1.20902 1.18347 1.20986 0.81794 0.90528 0.83195 1.90559 1.50372 1.45966 1.56575 1.21676 0.99282 0.93012 0.82335 0.87111 1.86491 1.43842 1.87478 1.17110 1.23322 0.96104 0.96034 1.00911 1.22887 0.97817 0.96501 1.00155 1.22770 0.96754 0.96527 1.01657 1.22929 0.96713 0.95490 1.01635 0.76822 0.88605 0.89161 0.91435 0.77264 0.88063 0.91089 0.89693 0.91493 0.90366 0.89215 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.59 19.25 29.55 0.57 -3.02 16 2 C -0.18 -3.60 13.00 -37.12 -0.48 -4.08 16 3 C 0.18 3.80 4.09 -6.83 -0.03 3.77 16 4 N -0.46 -11.16 2.22 -117.94 -0.26 -11.42 16 5 C -0.32 -9.09 9.48 -14.93 -0.14 -9.23 16 6 H 0.11 3.51 7.78 -52.49 -0.41 3.11 16 7 C 0.06 1.65 5.30 -17.47 -0.09 1.55 16 8 N -0.86 -24.64 13.96 55.50 0.77 -23.87 16 9 Si 0.86 19.57 24.92 -169.99 -4.24 15.34 16 10 H -0.27 -5.73 6.62 56.52 0.37 -5.36 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 13 C 0.45 10.50 6.87 -10.99 -0.08 10.43 16 14 O -0.55 -15.03 16.11 -14.07 -0.23 -15.25 16 15 C 0.10 1.82 2.61 -27.88 -0.07 1.74 16 16 H 0.11 1.94 6.99 -51.93 -0.36 1.57 16 17 O -0.54 -9.60 12.30 -54.84 -0.67 -10.28 16 18 C -0.14 -2.20 2.96 -89.80 -0.27 -2.47 16 19 C -0.14 -1.90 7.40 -25.92 -0.19 -2.09 16 20 C -0.14 -1.59 8.08 -25.92 -0.21 -1.80 16 21 C -0.13 -1.58 7.54 -25.92 -0.20 -1.77 16 22 H 0.21 2.69 7.80 -54.10 -0.42 2.27 16 23 H 0.10 2.06 3.00 -51.93 -0.16 1.91 16 24 H 0.09 1.54 4.73 -51.93 -0.25 1.30 16 25 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.38 6.04 6.48 45.56 0.30 6.34 16 27 H 0.10 1.61 6.29 -51.93 -0.33 1.28 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.12 5.91 -51.93 -0.31 0.81 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.09 7.75 -51.93 -0.40 0.69 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 274.53 15.07 4.14 4.14 Total: -1.00 -32.20 274.53 -4.86 -37.06 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -3.19 Total: 11.25 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -1.19 Total: -6.97 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.51 Total: -35.29 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.90 Total: -25.53 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.24 Total: 15.34 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.20 -4.86 -37.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491664762.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.018 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds