Wall clock time and date at job start Sun Mar 29 2020 22:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17412 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47010 * 40.09301 * 3 2 1 5 5 C 1.37104 * 119.99744 * 265.07757 * 4 3 2 6 6 H 1.07997 * 119.99768 * 146.36054 * 5 4 3 7 7 C 1.38950 * 120.00087 * 326.36701 * 5 4 3 8 8 N 1.31405 * 120.00022 * 157.25468 * 7 5 4 9 9 Si 1.86803 * 120.00067 * 337.24950 * 7 5 4 10 10 H 1.48494 * 109.47060 * 94.66230 * 9 7 5 11 11 H 1.48496 * 109.47017 * 214.66953 * 9 7 5 12 12 H 1.48512 * 109.46844 * 334.66399 * 9 7 5 13 13 C 1.34772 * 120.00299 * 85.08415 * 4 3 2 14 14 O 1.21293 * 120.00009 * 185.20606 * 13 4 3 15 15 C 1.50700 * 120.00013 * 5.21177 * 13 4 3 16 16 H 1.09001 * 109.47240 * 312.07322 * 15 13 4 17 17 O 1.42898 * 109.47341 * 192.07692 * 15 13 4 18 18 C 1.53001 * 109.47167 * 72.07240 * 15 13 4 19 19 C 1.53782 * 113.61291 * 81.79119 * 18 15 13 20 20 C 1.53781 * 87.08074 * 139.97905 * 19 18 15 21 21 C 1.53782 * 87.08208 * 334.56500 * 20 19 18 22 22 H 4.40634 * 5.51367 * 180.02562 * 4 1 2 23 23 H 1.08996 * 109.47005 * 280.08874 * 3 2 1 24 24 H 1.09004 * 109.46639 * 160.09045 * 3 2 1 25 25 H 0.96998 * 120.00344 * 179.97438 * 8 7 5 26 26 H 0.96699 * 113.99714 * 299.99660 * 17 15 13 27 27 H 1.09000 * 112.91027 * 310.53926 * 18 15 13 28 28 H 1.08995 * 113.61458 * 254.52792 * 19 18 15 29 29 H 1.09006 * 113.61200 * 25.43072 * 19 18 15 30 30 H 1.09004 * 113.61254 * 220.01905 * 20 19 18 31 31 H 1.09001 * 113.68862 * 89.13092 * 20 19 18 32 32 H 1.08997 * 113.61510 * 270.88262 * 21 20 19 33 33 H 1.08994 * 113.60991 * 139.97985 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.0557 -0.8895 5 6 3.4599 -2.2859 -0.3789 6 1 3.2947 -3.1759 -0.9680 7 6 4.0018 -2.3876 0.8966 8 7 3.9045 -3.5155 1.5638 9 14 4.8688 -0.9210 1.6627 10 1 3.9097 -0.1649 2.5074 11 1 5.9988 -1.3963 2.5007 12 1 5.3871 -0.0359 0.5887 13 6 3.2651 -0.8184 -2.2098 14 8 3.5788 -1.7185 -2.9598 15 6 3.0210 0.5655 -2.7542 16 1 2.0846 0.9537 -2.3535 17 8 2.9420 0.5094 -4.1799 18 6 4.1721 1.4857 -2.3430 19 6 5.4101 1.3653 -3.2473 20 6 5.5404 2.8938 -3.1392 21 6 4.0274 2.9246 -2.8659 22 1 -1.0497 -0.0001 -0.0004 23 1 3.0095 -0.1792 1.0117 24 1 3.0089 0.9671 -0.3500 25 1 4.2831 -3.5866 2.4540 26 1 3.7424 0.1726 -4.6052 27 1 4.4015 1.4288 -1.2789 28 1 6.2360 0.8231 -2.7869 29 1 5.1827 1.0166 -4.2547 30 1 5.8249 3.3750 -4.0750 31 1 6.1438 3.2232 -2.2934 32 1 3.4220 3.0022 -3.7690 33 1 3.7371 3.6412 -2.0977 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491664762.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:45 Heat of formation + Delta-G solvation = -12.986859 kcal Electronic energy + Delta-G solvation = -17496.079170 eV Core-core repulsion = 14717.199054 eV Total energy + Delta-G solvation = -2778.880116 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.56312 -39.48541 -37.53235 -36.37633 -34.61278 -33.40127 -30.43337 -28.45195 -26.93048 -26.50300 -24.34533 -21.17179 -20.46372 -20.12844 -18.78154 -18.32002 -17.91949 -17.56981 -16.80597 -16.09444 -15.63343 -15.31552 -14.99933 -14.75052 -14.40478 -14.22177 -14.08931 -13.32381 -12.95755 -12.85689 -12.72966 -12.66445 -12.17211 -12.02327 -11.51578 -11.47653 -11.38762 -11.21139 -11.06217 -10.96539 -10.17686 -9.99686 -8.58276 -6.20267 1.12788 1.25567 1.38636 1.55937 1.80320 1.85441 2.11456 2.72115 2.84200 3.30311 3.50321 3.53422 3.66848 3.69519 3.92426 4.02200 4.11567 4.21087 4.32815 4.47522 4.77754 4.86340 4.91744 5.03492 5.08412 5.13408 5.31063 5.41661 5.58574 5.94008 6.34167 6.55915 6.65771 6.81281 7.16020 7.67943 8.59026 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.010261 C = 0.009438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.237408 B = 2728.165142 C = 2966.000815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.244 4.244 3 C 0.183 3.817 4 N -0.465 5.465 5 C -0.343 4.343 6 H 0.043 0.957 7 C 0.012 3.988 8 N -0.905 5.905 9 Si 0.938 3.062 10 H -0.239 1.239 11 H -0.281 1.281 12 H -0.240 1.240 13 C 0.437 3.563 14 O -0.607 6.607 15 C 0.115 3.885 16 H 0.124 0.876 17 O -0.545 6.545 18 C -0.155 4.155 19 C -0.148 4.148 20 C -0.125 4.125 21 C -0.116 4.116 22 H 0.257 0.743 23 H 0.087 0.913 24 H 0.128 0.872 25 H 0.282 0.718 26 H 0.383 0.617 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 17.773 -2.952 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.246 4.246 3 C 0.062 3.938 4 N -0.187 5.187 5 C -0.471 4.471 6 H 0.061 0.939 7 C -0.191 4.191 8 N -0.542 5.542 9 Si 0.759 3.241 10 H -0.164 1.164 11 H -0.208 1.208 12 H -0.163 1.163 13 C 0.227 3.773 14 O -0.491 6.491 15 C 0.052 3.948 16 H 0.141 0.859 17 O -0.352 6.352 18 C -0.173 4.173 19 C -0.186 4.186 20 C -0.162 4.162 21 C -0.153 4.153 22 H 0.274 0.726 23 H 0.104 0.896 24 H 0.145 0.855 25 H 0.092 0.908 26 H 0.235 0.765 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.290 17.423 -3.072 17.694 hybrid contribution 0.688 -1.065 0.542 1.379 sum 0.398 16.358 -2.530 16.558 Atomic orbital electron populations 1.25788 0.96596 0.98240 0.98057 1.23810 0.95411 1.02469 1.02869 1.19189 0.85427 0.92925 0.96242 1.43746 1.57083 1.11586 1.06266 1.18656 1.43589 0.84116 1.00732 0.93893 1.26168 0.96092 1.00813 0.95994 1.69880 1.42120 1.29609 1.12593 0.86027 0.79088 0.79396 0.79568 1.16400 1.20778 1.16270 1.22147 0.80115 0.92366 0.82650 1.90516 1.52478 1.48239 1.57849 1.21645 1.01260 0.89660 0.82211 0.85871 1.86468 1.44593 1.87266 1.16908 1.23426 0.95283 0.97619 1.01012 1.23005 0.96787 0.98892 0.99891 1.22736 0.96471 0.93932 1.03096 1.22890 0.97290 0.93038 1.02074 0.72644 0.89553 0.85499 0.90793 0.76539 0.88336 0.92674 0.89474 0.89667 0.89242 0.89019 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.26 19.25 74.32 1.43 -3.83 16 2 C -0.24 -9.20 13.00 31.12 0.40 -8.80 16 3 C 0.18 7.29 4.09 84.57 0.35 7.63 16 4 N -0.46 -23.12 2.22 -645.43 -1.44 -24.56 16 5 C -0.34 -20.65 9.48 84.04 0.80 -19.85 16 6 H 0.04 3.06 7.78 -2.91 -0.02 3.04 16 7 C 0.01 0.68 5.30 84.93 0.45 1.13 16 8 N -0.91 -54.20 13.96 21.66 0.30 -53.89 16 9 Si 0.94 40.02 24.92 68.60 1.71 41.73 16 10 H -0.24 -8.94 6.62 99.48 0.66 -8.28 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.24 -9.39 7.11 99.48 0.71 -8.68 16 13 C 0.44 21.01 6.87 87.66 0.60 21.61 16 14 O -0.61 -34.71 16.11 15.68 0.25 -34.46 16 15 C 0.12 4.03 2.61 29.85 0.08 4.11 16 16 H 0.12 4.02 6.99 -2.39 -0.02 4.00 16 17 O -0.54 -18.70 12.30 -130.23 -1.60 -20.30 16 18 C -0.15 -4.29 2.96 -10.27 -0.03 -4.33 16 19 C -0.15 -3.85 7.40 31.12 0.23 -3.62 16 20 C -0.13 -2.34 8.08 31.12 0.25 -2.09 16 21 C -0.12 -2.30 7.54 31.12 0.23 -2.07 16 22 H 0.26 5.23 7.80 -4.43 -0.03 5.20 16 23 H 0.09 3.54 3.00 -2.39 -0.01 3.53 16 24 H 0.13 3.96 4.73 -2.39 -0.01 3.95 16 25 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 26 H 0.38 12.15 6.48 -74.06 -0.48 11.67 16 27 H 0.10 2.81 6.29 -2.39 -0.02 2.79 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 2.18 5.91 -2.38 -0.01 2.17 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.84 7.75 -2.39 -0.02 1.82 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -75.86 274.53 4.63 -71.23 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.60 Total: 30.36 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 4.79 Total: -10.11 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -1.13 Total: -78.45 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -1.35 Total: -54.76 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.71 Total: 41.73 kcal Total: -75.86 4.63 -71.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491664762.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.246 kcal (2) G-P(sol) polarization free energy of solvation -75.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds