Wall clock time and date at job start Sun Mar 29 2020 22:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47043 * 120.37512 * 3 2 1 5 5 C 1.37092 * 120.00265 * 84.82819 * 4 3 2 6 6 H 1.08003 * 120.00024 * 167.86384 * 5 4 3 7 7 C 1.38953 * 120.00340 * 347.86138 * 5 4 3 8 8 N 1.31418 * 119.99442 * 2.27099 * 7 5 4 9 9 Si 1.86793 * 120.00430 * 182.26881 * 7 5 4 10 10 H 1.48501 * 109.46944 * 60.00080 * 9 7 5 11 11 H 1.48500 * 109.47146 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47254 * 300.00160 * 9 7 5 13 13 C 1.34777 * 119.99837 * 264.83399 * 4 3 2 14 14 O 1.21286 * 120.00180 * 185.05143 * 13 4 3 15 15 C 1.50707 * 119.99709 * 5.04862 * 13 4 3 16 16 C 1.52993 * 109.47092 * 278.13343 * 15 13 4 17 17 O 1.42896 * 109.47230 * 38.14060 * 15 13 4 18 18 C 1.52998 * 109.46801 * 158.13602 * 15 13 4 19 19 C 1.53000 * 117.51917 * 111.28439 * 18 15 13 20 20 C 1.53001 * 60.00144 * 107.48020 * 19 18 15 21 21 H 4.40650 * 5.51397 * 180.02562 * 4 1 2 22 22 H 1.08999 * 109.47338 * 0.36999 * 3 2 1 23 23 H 1.09005 * 109.46854 * 240.36621 * 3 2 1 24 24 H 0.97000 * 119.99516 * 180.02562 * 8 7 5 25 25 H 1.09000 * 109.47820 * 300.00234 * 16 15 13 26 26 H 1.09004 * 109.47367 * 60.00140 * 16 15 13 27 27 H 1.09002 * 109.46868 * 180.02562 * 16 15 13 28 28 H 0.96695 * 114.00437 * 59.99738 * 17 15 13 29 29 H 1.09001 * 115.55014 * 325.58425 * 18 15 13 30 30 H 1.09002 * 117.49952 * 214.97563 * 19 18 15 31 31 H 1.09006 * 117.49949 * 359.97438 * 19 18 15 32 32 H 1.09002 * 117.49918 * 252.51287 * 20 19 18 33 33 H 1.08997 * 117.49350 * 107.48756 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6993 -1.1917 5 6 3.2610 2.0643 -1.1821 6 1 3.7985 2.5622 -1.9757 7 6 2.6982 2.8074 -0.1516 8 7 2.0827 2.1985 0.8371 9 14 2.8164 4.6714 -0.1716 10 1 2.1565 5.1962 -1.3941 11 1 2.1412 5.2232 1.0304 12 1 4.2449 5.0769 -0.1674 13 6 3.4580 0.0001 -2.2974 14 8 3.9479 0.5667 -3.2513 15 6 3.2117 -1.4858 -2.3483 16 6 4.3572 -2.2171 -1.6456 17 8 1.9794 -1.7872 -1.6905 18 6 3.1354 -1.9403 -3.8072 19 6 4.2708 -2.8205 -4.3337 20 6 2.8908 -3.4273 -4.0721 21 1 -1.0502 0.0000 0.0003 22 1 3.0098 -1.0268 -0.0066 23 1 3.0091 0.5090 0.8933 24 1 1.6894 2.7172 1.5562 25 1 5.2971 -1.9872 -2.1473 26 1 4.4116 -1.8932 -0.6062 27 1 4.1792 -3.2918 -1.6828 28 1 1.2081 -1.3565 -2.0836 29 1 2.6900 -1.2259 -4.4995 30 1 4.5723 -2.6850 -5.3724 31 1 5.0726 -3.0756 -3.6408 32 1 2.7847 -4.0818 -3.2069 33 1 2.2846 -3.6910 -4.9386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491705161.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:54 Heat of formation + Delta-G solvation = 25.998564 kcal Electronic energy + Delta-G solvation = -17681.644493 eV Core-core repulsion = 14904.454912 eV Total energy + Delta-G solvation = -2777.189581 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.71638 -37.19390 -35.40901 -34.72482 -31.75593 -31.23539 -30.00436 -26.36879 -25.29402 -23.96144 -22.09386 -20.64565 -18.82485 -17.81282 -17.07180 -16.56047 -15.91561 -15.03543 -14.71014 -14.16038 -13.77433 -13.35161 -13.26151 -12.82499 -12.51782 -12.03127 -11.90478 -11.71729 -11.25804 -11.07089 -10.95367 -10.84761 -10.52471 -10.34003 -10.12902 -9.94603 -9.70782 -9.43611 -9.08446 -8.58523 -8.19906 -7.90352 -6.21883 -3.88354 3.15425 3.23125 3.26308 3.69148 3.85952 4.09156 4.18569 4.33880 4.70250 4.81057 5.07478 5.11320 5.25617 5.34795 5.46049 5.68830 5.76821 5.85179 5.97754 6.04602 6.15933 6.19796 6.35553 6.41509 6.59316 6.72002 7.16118 7.28211 7.54453 7.90878 8.11665 8.46745 9.00922 9.12358 9.37103 9.88952 10.66224 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033361 B = 0.008920 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.097935 B = 3138.237581 C = 3619.249018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.067 4.067 3 C 0.223 3.777 4 N -0.432 5.432 5 C -0.306 4.306 6 H 0.104 0.896 7 C 0.029 3.971 8 N -0.874 5.874 9 Si 0.932 3.068 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.421 3.579 14 O -0.584 6.584 15 C 0.153 3.847 16 C -0.139 4.139 17 O -0.544 6.544 18 C -0.156 4.156 19 C -0.174 4.174 20 C -0.173 4.173 21 H 0.194 0.806 22 H 0.071 0.929 23 H 0.126 0.874 24 H 0.268 0.732 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.377 0.623 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 -8.390 -2.157 8.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.069 4.069 3 C 0.101 3.899 4 N -0.149 5.149 5 C -0.434 4.434 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.515 5.515 9 Si 0.759 3.241 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.208 3.792 14 O -0.468 6.468 15 C 0.109 3.891 16 C -0.196 4.196 17 O -0.350 6.350 18 C -0.175 4.175 19 C -0.211 4.211 20 C -0.210 4.210 21 H 0.211 0.789 22 H 0.089 0.911 23 H 0.143 0.857 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.225 0.775 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.890 -8.363 -2.042 8.654 hybrid contribution -0.807 1.399 -0.247 1.634 sum 0.083 -6.964 -2.289 7.331 Atomic orbital electron populations 1.24138 0.95287 1.08384 1.04483 1.23084 0.94106 0.93395 0.96308 1.18935 0.84534 0.95122 0.91328 1.43766 1.54606 1.06606 1.09960 1.19764 1.33089 0.80759 1.09745 0.87868 1.25328 0.95710 1.00716 0.95583 1.69974 1.35777 1.35046 1.10672 0.85903 0.78530 0.82043 0.77651 1.19993 1.20882 1.19887 1.20585 0.86124 0.88873 0.83615 1.90515 1.48813 1.71094 1.36417 1.20661 0.86179 0.92459 0.89839 1.21928 0.96455 1.00080 1.01142 1.86569 1.16212 1.74417 1.57817 1.22622 1.04404 0.93311 0.97153 1.23019 0.92225 1.03946 1.01880 1.22881 0.99405 0.95821 1.02873 0.78901 0.91111 0.85690 0.92054 0.90743 0.91259 0.91673 0.77458 0.87487 0.89179 0.88282 0.88596 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.42 19.09 29.55 0.56 -5.85 16 2 C -0.07 -1.53 8.93 -37.12 -0.33 -1.86 16 3 C 0.22 5.13 4.73 -6.83 -0.03 5.09 16 4 N -0.43 -10.92 2.60 -117.93 -0.31 -11.23 16 5 C -0.31 -8.42 9.49 -14.93 -0.14 -8.56 16 6 H 0.10 2.98 7.21 -52.48 -0.38 2.60 16 7 C 0.03 0.75 5.38 -17.46 -0.09 0.65 16 8 N -0.87 -22.61 8.11 55.50 0.45 -22.16 16 9 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 C 0.42 10.12 6.53 -10.98 -0.07 10.05 16 14 O -0.58 -15.92 15.68 5.55 0.09 -15.83 16 15 C 0.15 2.87 0.77 -91.77 -0.07 2.80 16 16 C -0.14 -2.27 7.18 37.15 0.27 -2.00 16 17 O -0.54 -9.98 8.93 -35.23 -0.31 -10.30 16 18 C -0.16 -2.66 4.83 -90.62 -0.44 -3.10 16 19 C -0.17 -2.48 9.57 -26.73 -0.26 -2.73 16 20 C -0.17 -2.34 9.80 -26.73 -0.26 -2.60 16 21 H 0.19 3.38 7.80 -54.08 -0.42 2.96 16 22 H 0.07 1.47 4.06 -51.93 -0.21 1.26 16 23 H 0.13 3.09 6.00 -51.93 -0.31 2.78 16 24 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 25 H 0.07 1.18 6.97 -51.93 -0.36 0.82 16 26 H 0.07 1.15 6.26 -51.93 -0.33 0.82 16 27 H 0.06 0.91 7.07 -51.93 -0.37 0.54 16 28 H 0.38 6.82 8.09 45.56 0.37 7.19 16 29 H 0.11 2.00 7.89 -51.93 -0.41 1.59 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.10 1.33 5.85 -51.93 -0.30 1.02 16 32 H 0.10 1.26 7.60 -51.93 -0.39 0.86 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 271.90 15.07 4.10 4.10 Total: -1.00 -29.75 271.90 -4.97 -34.72 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -3.10 Total: 13.01 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.87 Total: -8.10 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.14 Total: -33.39 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.23 Total: -26.13 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.75 -4.97 -34.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491705161.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.722 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds