Wall clock time and date at job start Sun Mar 29 2020 22:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47043 * 120.37512 * 3 2 1 5 5 C 1.37092 * 120.00265 * 84.82819 * 4 3 2 6 6 H 1.08003 * 120.00024 * 167.86384 * 5 4 3 7 7 C 1.38953 * 120.00340 * 347.86138 * 5 4 3 8 8 N 1.31418 * 119.99442 * 2.27099 * 7 5 4 9 9 Si 1.86793 * 120.00430 * 182.26881 * 7 5 4 10 10 H 1.48501 * 109.46944 * 60.00080 * 9 7 5 11 11 H 1.48500 * 109.47146 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47254 * 300.00160 * 9 7 5 13 13 C 1.34777 * 119.99837 * 264.83399 * 4 3 2 14 14 O 1.21286 * 120.00180 * 185.05143 * 13 4 3 15 15 C 1.50707 * 119.99709 * 5.04862 * 13 4 3 16 16 C 1.52993 * 109.47092 * 278.13343 * 15 13 4 17 17 O 1.42896 * 109.47230 * 38.14060 * 15 13 4 18 18 C 1.52998 * 109.46801 * 158.13602 * 15 13 4 19 19 C 1.53000 * 117.51917 * 111.28439 * 18 15 13 20 20 C 1.53001 * 60.00144 * 107.48020 * 19 18 15 21 21 H 4.40650 * 5.51397 * 180.02562 * 4 1 2 22 22 H 1.08999 * 109.47338 * 0.36999 * 3 2 1 23 23 H 1.09005 * 109.46854 * 240.36621 * 3 2 1 24 24 H 0.97000 * 119.99516 * 180.02562 * 8 7 5 25 25 H 1.09000 * 109.47820 * 300.00234 * 16 15 13 26 26 H 1.09004 * 109.47367 * 60.00140 * 16 15 13 27 27 H 1.09002 * 109.46868 * 180.02562 * 16 15 13 28 28 H 0.96695 * 114.00437 * 59.99738 * 17 15 13 29 29 H 1.09001 * 115.55014 * 325.58425 * 18 15 13 30 30 H 1.09002 * 117.49952 * 214.97563 * 19 18 15 31 31 H 1.09006 * 117.49949 * 359.97438 * 19 18 15 32 32 H 1.09002 * 117.49918 * 252.51287 * 20 19 18 33 33 H 1.08997 * 117.49350 * 107.48756 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6993 -1.1917 5 6 3.2610 2.0643 -1.1821 6 1 3.7985 2.5622 -1.9757 7 6 2.6982 2.8074 -0.1516 8 7 2.0827 2.1985 0.8371 9 14 2.8164 4.6714 -0.1716 10 1 2.1565 5.1962 -1.3941 11 1 2.1412 5.2232 1.0304 12 1 4.2449 5.0769 -0.1674 13 6 3.4580 0.0001 -2.2974 14 8 3.9479 0.5667 -3.2513 15 6 3.2117 -1.4858 -2.3483 16 6 4.3572 -2.2171 -1.6456 17 8 1.9794 -1.7872 -1.6905 18 6 3.1354 -1.9403 -3.8072 19 6 4.2708 -2.8205 -4.3337 20 6 2.8908 -3.4273 -4.0721 21 1 -1.0502 0.0000 0.0003 22 1 3.0098 -1.0268 -0.0066 23 1 3.0091 0.5090 0.8933 24 1 1.6894 2.7172 1.5562 25 1 5.2971 -1.9872 -2.1473 26 1 4.4116 -1.8932 -0.6062 27 1 4.1792 -3.2918 -1.6828 28 1 1.2081 -1.3565 -2.0836 29 1 2.6900 -1.2259 -4.4995 30 1 4.5723 -2.6850 -5.3724 31 1 5.0726 -3.0756 -3.6408 32 1 2.7847 -4.0818 -3.2069 33 1 2.2846 -3.6910 -4.9386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491705161.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:53 Heat of formation + Delta-G solvation = 6.552942 kcal Electronic energy + Delta-G solvation = -17682.487718 eV Core-core repulsion = 14904.454912 eV Total energy + Delta-G solvation = -2778.032806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35873 -38.75165 -37.24619 -36.23564 -33.66850 -33.04698 -31.43387 -28.23353 -27.00970 -25.56120 -23.18205 -22.29310 -20.34468 -19.66349 -18.71389 -18.32125 -17.34237 -16.97265 -16.27298 -15.94754 -15.39532 -15.04869 -14.71914 -14.38551 -14.15761 -13.75305 -13.40079 -13.09978 -13.00939 -12.86117 -12.54591 -12.38181 -12.15318 -12.07684 -11.42535 -11.35704 -11.25762 -11.02421 -10.84077 -10.38929 -10.05055 -9.85710 -8.19392 -5.95285 1.34853 1.38827 1.48609 1.87090 2.11564 2.35808 2.58867 2.80159 3.07195 3.20026 3.37456 3.74977 3.86855 4.04879 4.09991 4.15437 4.33604 4.59402 4.72610 4.76361 4.88127 4.97352 5.01631 5.16919 5.29038 5.30247 5.32479 5.44394 5.58657 6.00151 6.40154 6.61752 7.12791 7.28322 7.44011 7.96157 8.64442 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033361 B = 0.008920 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.097935 B = 3138.237581 C = 3619.249018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.108 4.108 3 C 0.231 3.769 4 N -0.443 5.443 5 C -0.346 4.346 6 H 0.075 0.925 7 C 0.001 3.999 8 N -0.877 5.877 9 Si 0.989 3.011 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.270 1.270 13 C 0.409 3.591 14 O -0.627 6.627 15 C 0.164 3.836 16 C -0.137 4.137 17 O -0.539 6.539 18 C -0.191 4.191 19 C -0.168 4.168 20 C -0.141 4.141 21 H 0.228 0.772 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.271 0.729 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.377 0.623 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 -9.799 -1.793 9.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.110 4.110 3 C 0.110 3.890 4 N -0.160 5.160 5 C -0.474 4.474 6 H 0.093 0.907 7 C -0.201 4.201 8 N -0.516 5.516 9 Si 0.813 3.187 10 H -0.206 1.206 11 H -0.193 1.193 12 H -0.195 1.195 13 C 0.199 3.801 14 O -0.515 6.515 15 C 0.120 3.880 16 C -0.194 4.194 17 O -0.345 6.345 18 C -0.210 4.210 19 C -0.205 4.205 20 C -0.178 4.178 21 H 0.245 0.755 22 H 0.109 0.891 23 H 0.121 0.879 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.225 0.775 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.162 -9.800 -1.646 9.939 hybrid contribution -0.622 1.836 -0.369 1.973 sum -0.460 -7.965 -2.015 8.228 Atomic orbital electron populations 1.24960 0.96177 1.06500 1.02563 1.23234 0.94573 0.95100 0.98057 1.18802 0.85161 0.95506 0.89543 1.43962 1.54787 1.06183 1.11095 1.19682 1.35081 0.82404 1.10207 0.90657 1.25987 0.94914 1.04367 0.94838 1.70115 1.34966 1.36093 1.10409 0.85056 0.78625 0.77308 0.77679 1.20597 1.19342 1.19508 1.21684 0.84614 0.91280 0.82556 1.90466 1.50478 1.72705 1.37812 1.20552 0.87037 0.88725 0.91708 1.21955 0.95416 1.01653 1.00335 1.86552 1.16060 1.73869 1.58057 1.22463 1.07941 0.95154 0.95431 1.23173 0.92620 1.02154 1.02527 1.22976 0.98592 0.92507 1.03731 0.75546 0.89076 0.87860 0.91840 0.90499 0.91867 0.88431 0.77494 0.90234 0.88357 0.87159 0.87375 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -11.43 19.09 74.32 1.42 -10.01 16 2 C -0.11 -4.85 8.93 31.13 0.28 -4.58 16 3 C 0.23 10.73 4.73 84.57 0.40 11.13 16 4 N -0.44 -23.05 2.60 -645.40 -1.68 -24.73 16 5 C -0.35 -19.74 9.49 84.04 0.80 -18.94 16 6 H 0.08 4.61 7.21 -2.91 -0.02 4.58 16 7 C 0.00 0.03 5.38 84.93 0.46 0.49 16 8 N -0.88 -45.31 8.11 21.66 0.18 -45.14 16 9 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 C 0.41 20.28 6.53 87.66 0.57 20.85 16 14 O -0.63 -35.76 15.68 -3.05 -0.05 -35.81 16 15 C 0.16 6.08 0.77 -11.54 -0.01 6.07 16 16 C -0.14 -4.22 7.18 71.98 0.52 -3.71 16 17 O -0.54 -19.18 8.93 -148.98 -1.33 -20.51 16 18 C -0.19 -6.34 4.83 -10.79 -0.05 -6.39 16 19 C -0.17 -4.40 9.57 30.59 0.29 -4.11 16 20 C -0.14 -3.37 9.80 30.60 0.30 -3.07 16 21 H 0.23 7.19 7.80 -4.41 -0.03 7.15 16 22 H 0.09 3.75 4.06 -2.39 -0.01 3.75 16 23 H 0.10 5.21 6.00 -2.38 -0.01 5.19 16 24 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 25 H 0.08 2.34 6.97 -2.39 -0.02 2.32 16 26 H 0.06 2.02 6.26 -2.39 -0.01 2.00 16 27 H 0.10 2.38 7.07 -2.39 -0.02 2.37 16 28 H 0.38 13.43 8.09 -74.06 -0.60 12.83 16 29 H 0.08 3.06 7.89 -2.39 -0.02 3.04 16 30 H 0.10 2.40 8.14 -2.39 -0.02 2.39 16 31 H 0.11 2.64 5.85 -2.38 -0.01 2.62 16 32 H 0.11 2.37 7.60 -2.39 -0.02 2.35 16 33 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -65.53 271.90 4.66 -60.87 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.53 Total: 32.65 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 4.97 Total: -12.27 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -1.50 Total: -69.86 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: -1.38 Total: -56.32 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -65.53 4.66 -60.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491705161.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.423 kcal (2) G-P(sol) polarization free energy of solvation -65.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds