Wall clock time and date at job start Sun Mar 29 2020 22:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33403 * 120.00243 * 2 1 4 4 C 1.46343 * 120.00370 * 180.02562 * 3 2 1 5 5 C 1.35168 * 120.00445 * 185.60527 * 4 3 2 6 6 C 1.46271 * 119.99909 * 354.50270 * 5 4 3 7 7 O 1.21715 * 119.99553 * 5.77304 * 6 5 4 8 8 N 1.34775 * 119.99797 * 185.77991 * 6 5 4 9 9 C 1.47060 * 136.06105 * 359.62510 * 8 6 5 10 10 C 1.53237 * 88.08440 * 207.20975 * 9 8 6 11 11 O 1.42900 * 114.20123 * 87.72633 * 10 9 8 12 12 C 1.50700 * 114.32461 * 220.47335 * 10 9 8 13 13 H 1.07996 * 120.00238 * 93.75686 * 12 10 9 14 14 C 1.37879 * 120.00172 * 273.75297 * 12 10 9 15 15 N 1.31519 * 119.99732 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00433 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46979 * 60.00511 * 16 14 12 18 18 H 1.48503 * 109.47204 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47137 * 300.00166 * 16 14 12 20 20 C 1.47070 * 136.05434 * 180.02562 * 8 6 5 21 21 H 1.09004 * 109.46953 * 299.99985 * 1 2 3 22 22 H 1.08998 * 109.47100 * 59.99977 * 1 2 3 23 23 H 1.09005 * 109.47300 * 180.02562 * 1 2 3 24 24 H 1.08009 * 119.99731 * 179.97438 * 2 1 3 25 25 H 1.07995 * 119.99973 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.99473 * 5.87465 * 4 3 2 27 27 H 1.08004 * 120.00219 * 174.50439 * 5 4 3 28 28 H 1.09004 * 113.47075 * 321.94036 * 9 8 6 29 29 H 1.08999 * 113.47079 * 92.37821 * 9 8 6 30 30 H 0.96705 * 113.99699 * 86.30771 * 11 10 9 31 31 H 0.97000 * 120.00174 * 179.97438 * 15 14 12 32 32 H 1.09001 * 113.46464 * 267.61872 * 20 8 6 33 33 H 1.09001 * 113.46576 * 37.99437 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1740 1.1553 0.0000 4 6 3.6374 1.1553 -0.0006 5 6 4.3134 2.3202 0.1138 6 6 3.5871 3.5899 0.1170 7 8 2.3700 3.5947 0.1228 8 7 4.2657 4.7543 0.1134 9 6 5.6805 5.1555 0.1131 10 6 5.2592 6.4544 0.8085 11 8 5.2103 6.3665 2.2340 12 6 5.9739 7.6846 0.3117 13 1 5.5328 8.2873 -0.4683 14 6 7.1910 8.0406 0.8529 15 7 7.7284 7.3063 1.8025 16 14 8.0773 9.5651 0.2366 17 1 7.2226 10.7587 0.4598 18 1 9.3560 9.7264 0.9743 19 1 8.3582 9.4216 -1.2144 20 6 3.9171 6.1831 0.1153 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 2.0469 -0.9354 0.0004 25 1 1.6341 2.0906 -0.0004 26 1 4.1773 0.2249 -0.0967 27 1 5.3897 2.3136 0.2027 28 1 6.3125 4.5187 0.7323 29 1 6.0877 5.3103 -0.8860 30 1 6.0574 6.5380 2.6678 31 1 8.5848 7.5566 2.1831 32 1 3.8493 6.6146 -0.8834 33 1 3.0519 6.4180 0.7353 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492005652.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:17 Heat of formation + Delta-G solvation = -6.665020 kcal Electronic energy + Delta-G solvation = -16375.473708 eV Core-core repulsion = 13596.867728 eV Total energy + Delta-G solvation = -2778.605980 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.65292 -37.79983 -35.16607 -33.99108 -32.20465 -32.07732 -29.04069 -26.88495 -25.30184 -25.11394 -21.90358 -19.83330 -19.63788 -18.09100 -17.42180 -16.40266 -15.41499 -15.02430 -14.61791 -14.37463 -14.09155 -13.52818 -13.27804 -13.02533 -12.69197 -12.55450 -12.26330 -11.97401 -11.56559 -11.39503 -11.37331 -11.05462 -10.92768 -10.49431 -10.48899 -10.27006 -9.49688 -8.92590 -8.73550 -8.40544 -8.18694 -7.75103 -6.41506 -4.52126 1.04279 2.94160 3.15339 3.21302 3.23495 3.60725 3.90113 4.17391 4.80935 4.94838 5.08967 5.20736 5.52692 5.57968 5.64090 5.67398 5.70925 5.92804 6.03626 6.21302 6.24316 6.40056 6.45615 6.55544 6.67021 6.75164 6.97792 7.07894 7.15961 7.61589 7.79298 8.50409 8.57200 8.81980 9.19305 9.48207 10.65145 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.065050 B = 0.004752 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.332698 B = 5890.255146 C = 5997.261606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.053 4.053 5 C -0.191 4.191 6 C 0.565 3.435 7 O -0.563 6.563 8 N -0.627 5.627 9 C 0.071 3.929 10 C 0.239 3.761 11 O -0.571 6.571 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.910 3.090 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.106 3.894 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.100 0.900 25 H 0.175 0.825 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.394 0.606 31 H 0.275 0.725 32 H 0.085 0.915 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 -9.008 -3.448 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.176 4.176 3 C -0.182 4.182 4 C -0.073 4.073 5 C -0.212 4.212 6 C 0.358 3.642 7 O -0.447 6.447 8 N -0.358 5.358 9 C -0.052 4.052 10 C 0.197 3.803 11 O -0.384 6.384 12 C -0.573 4.573 13 H 0.091 0.909 14 C -0.130 4.130 15 N -0.539 5.539 16 Si 0.737 3.263 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.017 4.017 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.118 0.882 25 H 0.191 0.809 26 H 0.138 0.862 27 H 0.144 0.856 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.250 0.750 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.999 -9.324 -3.426 11.121 hybrid contribution 1.472 0.628 -0.223 1.616 sum -3.528 -8.696 -3.650 10.069 Atomic orbital electron populations 1.20805 0.93116 1.01682 1.02255 1.23584 0.96196 0.97340 1.00444 1.23555 0.93937 1.01714 0.98968 1.22490 0.94332 0.96711 0.93723 1.23011 1.00371 0.92323 1.05458 1.17884 0.86458 0.83060 0.76753 1.90394 1.13806 1.86157 1.54349 1.49685 1.11220 1.05384 1.69516 1.24196 0.81296 0.98461 1.01233 1.19486 0.89650 0.90784 0.80335 1.86052 1.40446 1.93581 1.18366 1.21403 1.04290 1.10053 1.21523 0.90946 1.25084 0.96690 0.97050 0.94223 1.69258 1.19276 1.38836 1.26540 0.86353 0.78611 0.82344 0.79009 1.19804 1.20981 1.19863 1.23337 1.00400 0.77829 1.00085 0.91533 0.91595 0.92457 0.88173 0.80902 0.86168 0.85564 0.91678 0.89982 0.74974 0.91502 0.89651 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 10.19 36.00 0.37 -0.96 16 2 C -0.16 -1.99 9.98 -36.00 -0.36 -2.35 16 3 C -0.16 -2.57 8.80 -38.01 -0.33 -2.90 16 4 C -0.05 -0.77 9.89 -37.42 -0.37 -1.14 16 5 C -0.19 -3.23 9.91 -37.45 -0.37 -3.60 16 6 C 0.57 11.80 7.95 -13.03 -0.10 11.69 16 7 O -0.56 -12.71 13.72 5.17 0.07 -12.64 16 8 N -0.63 -13.53 3.69 -187.13 -0.69 -14.22 16 9 C 0.07 1.53 7.73 -8.65 -0.07 1.47 16 10 C 0.24 5.76 1.57 -91.40 -0.14 5.61 16 11 O -0.57 -14.85 13.54 -35.23 -0.48 -15.33 16 12 C -0.53 -13.30 8.69 -34.44 -0.30 -13.60 16 13 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 15 N -0.90 -22.59 11.01 55.43 0.61 -21.98 16 16 Si 0.91 19.21 29.54 -169.99 -5.02 14.19 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 C 0.11 2.33 8.03 -8.52 -0.07 2.26 16 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.10 1.07 8.05 -52.48 -0.42 0.65 16 25 H 0.17 3.23 4.58 -55.15 -0.25 2.98 16 26 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 27 H 0.13 1.91 7.98 -52.48 -0.42 1.49 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 30 H 0.39 10.29 6.33 45.56 0.29 10.57 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 33 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 288.98 15.07 4.35 4.35 Total: -1.00 -27.53 288.98 -6.73 -34.26 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -3.73 Total: 13.20 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.85 Total: -1.84 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.08 Total: -36.20 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.41 Total: -27.97 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.53 -6.73 -34.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492005652.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.596 kcal (2) G-P(sol) polarization free energy of solvation -27.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds