Wall clock time and date at job start Sun Mar 29 2020 22:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33403 * 120.00243 * 2 1 4 4 C 1.46343 * 120.00370 * 180.02562 * 3 2 1 5 5 C 1.35168 * 120.00445 * 185.60527 * 4 3 2 6 6 C 1.46271 * 119.99909 * 354.50270 * 5 4 3 7 7 O 1.21715 * 119.99553 * 5.77304 * 6 5 4 8 8 N 1.34775 * 119.99797 * 185.77991 * 6 5 4 9 9 C 1.47060 * 136.06105 * 359.62510 * 8 6 5 10 10 C 1.53237 * 88.08440 * 207.20975 * 9 8 6 11 11 O 1.42900 * 114.20123 * 87.72633 * 10 9 8 12 12 C 1.50700 * 114.32461 * 220.47335 * 10 9 8 13 13 H 1.07996 * 120.00238 * 93.75686 * 12 10 9 14 14 C 1.37879 * 120.00172 * 273.75297 * 12 10 9 15 15 N 1.31519 * 119.99732 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00433 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46979 * 60.00511 * 16 14 12 18 18 H 1.48503 * 109.47204 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47137 * 300.00166 * 16 14 12 20 20 C 1.47070 * 136.05434 * 180.02562 * 8 6 5 21 21 H 1.09004 * 109.46953 * 299.99985 * 1 2 3 22 22 H 1.08998 * 109.47100 * 59.99977 * 1 2 3 23 23 H 1.09005 * 109.47300 * 180.02562 * 1 2 3 24 24 H 1.08009 * 119.99731 * 179.97438 * 2 1 3 25 25 H 1.07995 * 119.99973 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.99473 * 5.87465 * 4 3 2 27 27 H 1.08004 * 120.00219 * 174.50439 * 5 4 3 28 28 H 1.09004 * 113.47075 * 321.94036 * 9 8 6 29 29 H 1.08999 * 113.47079 * 92.37821 * 9 8 6 30 30 H 0.96705 * 113.99699 * 86.30771 * 11 10 9 31 31 H 0.97000 * 120.00174 * 179.97438 * 15 14 12 32 32 H 1.09001 * 113.46464 * 267.61872 * 20 8 6 33 33 H 1.09001 * 113.46576 * 37.99437 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1740 1.1553 0.0000 4 6 3.6374 1.1553 -0.0006 5 6 4.3134 2.3202 0.1138 6 6 3.5871 3.5899 0.1170 7 8 2.3700 3.5947 0.1228 8 7 4.2657 4.7543 0.1134 9 6 5.6805 5.1555 0.1131 10 6 5.2592 6.4544 0.8085 11 8 5.2103 6.3665 2.2340 12 6 5.9739 7.6846 0.3117 13 1 5.5328 8.2873 -0.4683 14 6 7.1910 8.0406 0.8529 15 7 7.7284 7.3063 1.8025 16 14 8.0773 9.5651 0.2366 17 1 7.2226 10.7587 0.4598 18 1 9.3560 9.7264 0.9743 19 1 8.3582 9.4216 -1.2144 20 6 3.9171 6.1831 0.1153 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 2.0469 -0.9354 0.0004 25 1 1.6341 2.0906 -0.0004 26 1 4.1773 0.2249 -0.0967 27 1 5.3897 2.3136 0.2027 28 1 6.3125 4.5187 0.7323 29 1 6.0877 5.3103 -0.8860 30 1 6.0574 6.5380 2.6678 31 1 8.5848 7.5566 2.1831 32 1 3.8493 6.6146 -0.8834 33 1 3.0519 6.4180 0.7353 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492005652.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:17 Heat of formation + Delta-G solvation = -25.057999 kcal Electronic energy + Delta-G solvation = -16376.271287 eV Core-core repulsion = 13596.867728 eV Total energy + Delta-G solvation = -2779.403560 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.31751 -39.42989 -36.41011 -35.81594 -34.12975 -33.25291 -30.67566 -28.20481 -26.96196 -26.81885 -23.34222 -21.35668 -20.87203 -19.77478 -19.19033 -17.98544 -17.17831 -16.55626 -16.29456 -15.98780 -15.53767 -14.88161 -14.66305 -14.44597 -14.14875 -13.93111 -13.75805 -13.52833 -13.40659 -12.79063 -12.75659 -12.46130 -12.31503 -12.21703 -12.14582 -11.66811 -11.29025 -10.73637 -10.44292 -10.12070 -9.69295 -9.14889 -8.27380 -6.45103 -0.15624 1.49291 1.50992 1.58720 1.68410 2.02283 2.40419 2.49622 2.94536 3.57673 3.81303 3.92345 4.12655 4.26159 4.41302 4.49539 4.59386 4.62475 4.73644 4.79142 4.82176 4.88703 4.91835 5.09329 5.20502 5.23095 5.51709 5.72299 5.86383 5.90087 5.96046 6.60713 6.94408 7.23481 7.29601 7.48211 8.78702 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.065050 B = 0.004752 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.332698 B = 5890.255146 C = 5997.261606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.112 4.112 3 C -0.218 4.218 4 C -0.014 4.014 5 C -0.233 4.233 6 C 0.554 3.446 7 O -0.590 6.590 8 N -0.635 5.635 9 C 0.087 3.913 10 C 0.218 3.782 11 O -0.587 6.587 12 C -0.555 4.555 13 H 0.075 0.925 14 C 0.032 3.968 15 N -0.918 5.918 16 Si 0.973 3.027 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.266 1.266 20 C 0.106 3.894 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.134 0.866 25 H 0.138 0.862 26 H 0.166 0.834 27 H 0.141 0.859 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.389 0.611 31 H 0.277 0.723 32 H 0.103 0.897 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.606 -10.913 -4.310 12.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.130 4.130 3 C -0.235 4.235 4 C -0.034 4.034 5 C -0.253 4.253 6 C 0.350 3.650 7 O -0.476 6.476 8 N -0.366 5.366 9 C -0.036 4.036 10 C 0.177 3.823 11 O -0.400 6.400 12 C -0.593 4.593 13 H 0.093 0.907 14 C -0.168 4.168 15 N -0.559 5.559 16 Si 0.798 3.202 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.017 4.017 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.105 0.895 24 H 0.151 0.849 25 H 0.155 0.845 26 H 0.183 0.817 27 H 0.159 0.841 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.245 0.755 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.775 -11.243 -4.296 12.948 hybrid contribution 1.185 1.041 0.060 1.578 sum -3.590 -10.202 -4.235 11.615 Atomic orbital electron populations 1.20956 0.92125 1.03573 1.02088 1.24029 0.97151 0.97437 0.94407 1.23343 0.94727 1.01492 1.03958 1.22913 0.93976 0.97523 0.88962 1.22892 1.00933 0.91022 1.10473 1.18693 0.86500 0.83987 0.75779 1.90425 1.14979 1.86713 1.55524 1.49757 1.11036 1.05381 1.70433 1.23954 0.81375 0.96925 1.01351 1.19774 0.91055 0.92013 0.79478 1.86035 1.40345 1.93768 1.19880 1.21642 1.04862 1.10747 1.22019 0.90670 1.25796 0.97219 0.99524 0.94303 1.69325 1.19521 1.39933 1.27087 0.85374 0.77314 0.78827 0.78725 1.19954 1.20739 1.19099 1.23321 0.98921 0.78975 1.00500 0.91895 0.91542 0.89531 0.84860 0.84471 0.81696 0.84143 0.91897 0.88799 0.75476 0.91290 0.87921 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 10.19 71.23 0.73 -1.73 16 2 C -0.11 -2.43 9.98 24.59 0.25 -2.19 16 3 C -0.22 -6.46 8.80 23.29 0.20 -6.26 16 4 C -0.01 -0.39 9.89 23.67 0.23 -0.15 16 5 C -0.23 -7.73 9.91 23.65 0.23 -7.50 16 6 C 0.55 23.68 7.95 86.33 0.69 24.36 16 7 O -0.59 -27.67 13.72 -4.40 -0.06 -27.73 16 8 N -0.63 -28.00 3.69 -864.63 -3.19 -31.19 16 9 C 0.09 3.78 7.73 83.09 0.64 4.43 16 10 C 0.22 10.71 1.57 -11.30 -0.02 10.69 16 11 O -0.59 -31.48 13.54 -148.98 -2.02 -33.50 16 12 C -0.55 -27.79 8.69 25.60 0.22 -27.57 16 13 H 0.08 3.62 7.81 -2.91 -0.02 3.60 16 14 C 0.03 1.57 5.39 84.65 0.46 2.03 16 15 N -0.92 -46.36 11.01 21.45 0.24 -46.12 16 16 Si 0.97 39.05 29.54 68.60 2.03 41.08 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 20 C 0.11 4.79 8.03 83.17 0.67 5.45 16 21 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.13 2.08 8.05 -2.91 -0.02 2.05 16 25 H 0.14 5.23 4.58 -45.06 -0.21 5.03 16 26 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 27 H 0.14 4.14 7.98 -2.91 -0.02 4.11 16 28 H 0.06 2.72 8.14 -2.39 -0.02 2.71 16 29 H 0.09 3.81 8.10 -2.39 -0.02 3.79 16 30 H 0.39 20.98 6.33 -74.05 -0.47 20.52 16 31 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 32 H 0.10 4.19 8.10 -2.39 -0.02 4.17 16 33 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -60.52 288.98 1.74 -58.77 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: 0.45 Total: 37.13 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 4.30 Total: 1.57 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -2.96 Total: -77.31 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -2.08 Total: -61.23 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -60.52 1.74 -58.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492005652.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.715 kcal (2) G-P(sol) polarization free energy of solvation -60.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds