Wall clock time and date at job start Sun Mar 29 2020 22:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34179 * 127.02124 * 2 1 4 4 O 1.34213 * 109.12410 * 179.97438 * 3 2 1 5 5 C 1.33656 * 110.90902 * 359.76395 * 4 3 2 6 6 C 1.36415 * 108.39261 * 0.38274 * 5 4 3 7 7 C 1.47384 * 127.19060 * 179.89327 * 6 5 4 8 8 O 1.21606 * 120.00232 * 187.89321 * 7 6 5 9 9 N 1.34781 * 119.99665 * 7.90079 * 7 6 5 10 10 C 1.46496 * 120.00162 * 6.43291 * 9 7 6 11 11 C 1.46504 * 119.99622 * 186.43607 * 9 7 6 12 12 H 1.08999 * 109.47454 * 359.97438 * 11 9 7 13 13 C 1.52994 * 109.47437 * 120.00014 * 11 9 7 14 14 C 1.50701 * 109.46776 * 239.99834 * 11 9 7 15 15 H 1.08004 * 120.00139 * 359.97438 * 14 11 9 16 16 C 1.37878 * 120.00197 * 180.02562 * 14 11 9 17 17 N 1.31511 * 120.00325 * 180.02562 * 16 14 11 18 18 Si 1.86799 * 119.99807 * 359.97438 * 16 14 11 19 19 H 1.48500 * 109.46883 * 90.00182 * 18 16 14 20 20 H 1.48501 * 109.47363 * 210.00503 * 18 16 14 21 21 H 1.48505 * 109.47312 * 330.00657 * 18 16 14 22 22 H 1.08993 * 109.47990 * 270.02903 * 1 2 3 23 23 H 1.09010 * 109.47263 * 30.03624 * 1 2 3 24 24 H 1.09004 * 109.47117 * 150.02677 * 1 2 3 25 25 H 1.07999 * 125.44257 * 359.97138 * 3 2 1 26 26 H 1.08003 * 125.80549 * 180.26909 * 5 4 3 27 27 H 1.09003 * 109.47016 * 275.88020 * 10 9 7 28 28 H 1.08996 * 109.47367 * 155.88085 * 10 9 7 29 29 H 1.08995 * 109.47244 * 35.88014 * 10 9 7 30 30 H 1.08992 * 109.47556 * 179.97438 * 13 11 9 31 31 H 1.09004 * 109.46716 * 299.99643 * 13 11 9 32 32 H 1.08999 * 109.47457 * 59.99195 * 13 11 9 33 33 H 0.97000 * 120.00083 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5920 0.6589 0.0006 5 6 3.6623 -0.6758 0.0061 6 6 2.3922 -1.1737 0.0007 7 6 1.9913 -2.5920 0.0016 8 8 0.8228 -2.8937 -0.1483 9 7 2.9198 -3.5546 0.1688 10 6 4.3022 -3.1911 0.4897 11 6 2.5464 -4.9644 0.0296 12 1 1.4852 -5.0375 -0.2081 13 6 3.3663 -5.6005 -1.0947 14 6 2.8220 -5.6871 1.3230 15 1 3.2344 -5.1500 2.1644 16 6 2.5487 -7.0341 1.4319 17 7 2.7887 -7.6646 2.5607 18 14 1.8361 -7.9631 -0.0236 19 1 2.9414 -8.5077 -0.8523 20 1 0.9895 -9.0797 0.4682 21 1 1.0108 -7.0404 -0.8439 22 1 -0.3635 0.0005 1.0275 23 1 -0.3634 0.8897 -0.5144 24 1 -0.3633 -0.8903 -0.5134 25 1 1.9895 2.1011 -0.0004 26 1 4.5702 -1.2608 0.0118 27 1 4.8396 -2.9591 -0.4298 28 1 4.7893 -4.0252 0.9947 29 1 4.3062 -2.3186 1.1429 30 1 3.0889 -6.6494 -1.1980 31 1 3.1669 -5.0778 -2.0302 32 1 4.4275 -5.5274 -0.8567 33 1 2.5967 -8.6124 2.6372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528417271.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:32 Heat of formation + Delta-G solvation = -1.575991 kcal Electronic energy + Delta-G solvation = -17079.747318 eV Core-core repulsion = 14301.362015 eV Total energy + Delta-G solvation = -2778.385303 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.41801 -38.98722 -35.59462 -33.67137 -32.96882 -31.20695 -29.36510 -27.22031 -26.50224 -25.17324 -23.41315 -21.01201 -20.12244 -18.81533 -17.11763 -16.65285 -16.13250 -15.79388 -15.52170 -14.64927 -14.28221 -13.92235 -13.28929 -13.03644 -12.90133 -12.79805 -12.48695 -12.36345 -12.24854 -11.81221 -11.45263 -11.20263 -11.16781 -10.74776 -10.17193 -9.66637 -9.39794 -9.28587 -9.13591 -8.65223 -8.53665 -7.78594 -6.16208 -4.17082 1.60899 2.20476 3.06972 3.22157 3.36172 3.38676 3.72079 3.89479 4.33848 4.69453 4.85002 5.11132 5.18046 5.35470 5.51505 5.60632 5.72706 5.85278 5.96898 6.04038 6.17054 6.22321 6.24265 6.29148 6.45448 6.62885 6.79633 7.08861 7.13321 7.32761 7.60613 8.15705 8.43953 8.83062 8.90691 9.44514 10.96461 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039304 B = 0.006909 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.224296 B = 4051.984671 C = 4305.197564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.133 4.133 3 C -0.058 4.058 4 O -0.179 6.179 5 C -0.005 4.005 6 C -0.221 4.221 7 C 0.575 3.425 8 O -0.545 6.545 9 N -0.582 5.582 10 C 0.066 3.934 11 C 0.231 3.769 12 H 0.064 0.936 13 C -0.161 4.161 14 C -0.529 4.529 15 H 0.079 0.921 16 C 0.076 3.924 17 N -0.894 5.894 18 Si 0.884 3.116 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.263 1.263 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.085 0.915 25 H 0.203 0.797 26 H 0.227 0.773 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.056 0.944 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 14.450 -6.203 15.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C -0.123 4.123 4 O -0.075 6.075 5 C -0.074 4.074 6 C -0.226 4.226 7 C 0.363 3.637 8 O -0.424 6.424 9 N -0.313 5.313 10 C -0.078 4.078 11 C 0.129 3.871 12 H 0.081 0.919 13 C -0.219 4.219 14 C -0.567 4.567 15 H 0.097 0.903 16 C -0.127 4.127 17 N -0.532 5.532 18 Si 0.713 3.287 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.188 1.188 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.104 0.896 25 H 0.219 0.781 26 H 0.243 0.757 27 H 0.066 0.934 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.265 14.274 -6.177 15.717 hybrid contribution -0.290 -0.775 -0.589 1.016 sum 1.974 13.499 -6.766 15.228 Atomic orbital electron populations 1.20238 0.88601 1.03099 1.02474 1.21443 0.97229 0.90602 1.04235 1.23616 0.80133 0.99417 1.09180 1.83782 1.29397 1.22925 1.71399 1.25697 0.99977 0.80518 1.01218 1.21664 0.93171 0.94941 1.12802 1.17272 0.85526 0.83466 0.77413 1.90699 1.17585 1.82891 1.51225 1.47705 1.08454 1.07523 1.67598 1.22116 0.84020 1.02415 0.99229 1.19309 0.96713 0.75992 0.95097 0.91852 1.22463 1.01458 0.99911 0.98060 1.21158 1.44151 0.94159 0.97212 0.90282 1.24863 0.94648 0.97331 0.95871 1.69872 1.47887 1.10222 1.25203 0.86912 0.79311 0.79686 0.82750 1.20383 1.22088 1.18802 0.91355 0.92085 0.89639 0.78065 0.75720 0.93356 0.88797 0.91666 0.93061 0.94795 0.92522 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 10.08 36.00 0.36 -0.85 16 2 C -0.13 -2.00 6.37 -102.50 -0.65 -2.66 16 3 C -0.06 -0.69 11.96 29.30 0.35 -0.34 16 4 O -0.18 -2.30 10.52 7.65 0.08 -2.22 16 5 C -0.01 -0.07 10.05 30.08 0.30 0.23 16 6 C -0.22 -3.79 6.12 -103.28 -0.63 -4.42 16 7 C 0.57 12.23 7.66 -12.54 -0.10 12.14 16 8 O -0.54 -13.41 14.73 5.27 0.08 -13.33 16 9 N -0.58 -12.18 2.75 -176.55 -0.49 -12.66 16 10 C 0.07 1.04 7.61 59.84 0.46 1.49 16 11 C 0.23 5.59 2.21 -69.08 -0.15 5.44 16 12 H 0.06 1.71 5.98 -51.93 -0.31 1.40 16 13 C -0.16 -3.44 8.67 37.15 0.32 -3.12 16 14 C -0.53 -14.62 8.53 -34.44 -0.29 -14.92 16 15 H 0.08 2.35 7.68 -52.48 -0.40 1.94 16 16 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 17 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 18 Si 0.88 21.83 24.37 -169.99 -4.14 17.69 16 19 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 24 H 0.08 1.40 6.80 -51.93 -0.35 1.05 16 25 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 26 H 0.23 2.38 4.49 -52.48 -0.24 2.15 16 27 H 0.05 0.61 7.32 -51.93 -0.38 0.23 16 28 H 0.09 1.62 7.11 -51.93 -0.37 1.25 16 29 H 0.07 0.89 5.46 -51.93 -0.28 0.61 16 30 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.11 7.67 -51.93 -0.40 0.71 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 268.14 15.07 4.04 4.04 Total: -1.00 -33.50 268.14 -3.56 -37.06 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -3.78 Total: 0.47 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.13 Total: -4.93 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.29 Total: -38.79 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.16 Total: -15.54 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.50 -3.56 -37.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528417271.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.487 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds