Wall clock time and date at job start Sun Mar 29 2020 22:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34179 * 127.02124 * 2 1 4 4 O 1.34213 * 109.12410 * 179.97438 * 3 2 1 5 5 C 1.33656 * 110.90902 * 359.76395 * 4 3 2 6 6 C 1.36415 * 108.39261 * 0.38274 * 5 4 3 7 7 C 1.47384 * 127.19060 * 179.89327 * 6 5 4 8 8 O 1.21606 * 120.00232 * 187.89321 * 7 6 5 9 9 N 1.34781 * 119.99665 * 7.90079 * 7 6 5 10 10 C 1.46496 * 120.00162 * 6.43291 * 9 7 6 11 11 C 1.46504 * 119.99622 * 186.43607 * 9 7 6 12 12 H 1.08999 * 109.47454 * 359.97438 * 11 9 7 13 13 C 1.52994 * 109.47437 * 120.00014 * 11 9 7 14 14 C 1.50701 * 109.46776 * 239.99834 * 11 9 7 15 15 H 1.08004 * 120.00139 * 359.97438 * 14 11 9 16 16 C 1.37878 * 120.00197 * 180.02562 * 14 11 9 17 17 N 1.31511 * 120.00325 * 180.02562 * 16 14 11 18 18 Si 1.86799 * 119.99807 * 359.97438 * 16 14 11 19 19 H 1.48500 * 109.46883 * 90.00182 * 18 16 14 20 20 H 1.48501 * 109.47363 * 210.00503 * 18 16 14 21 21 H 1.48505 * 109.47312 * 330.00657 * 18 16 14 22 22 H 1.08993 * 109.47990 * 270.02903 * 1 2 3 23 23 H 1.09010 * 109.47263 * 30.03624 * 1 2 3 24 24 H 1.09004 * 109.47117 * 150.02677 * 1 2 3 25 25 H 1.07999 * 125.44257 * 359.97138 * 3 2 1 26 26 H 1.08003 * 125.80549 * 180.26909 * 5 4 3 27 27 H 1.09003 * 109.47016 * 275.88020 * 10 9 7 28 28 H 1.08996 * 109.47367 * 155.88085 * 10 9 7 29 29 H 1.08995 * 109.47244 * 35.88014 * 10 9 7 30 30 H 1.08992 * 109.47556 * 179.97438 * 13 11 9 31 31 H 1.09004 * 109.46716 * 299.99643 * 13 11 9 32 32 H 1.08999 * 109.47457 * 59.99195 * 13 11 9 33 33 H 0.97000 * 120.00083 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5920 0.6589 0.0006 5 6 3.6623 -0.6758 0.0061 6 6 2.3922 -1.1737 0.0007 7 6 1.9913 -2.5920 0.0016 8 8 0.8228 -2.8937 -0.1483 9 7 2.9198 -3.5546 0.1688 10 6 4.3022 -3.1911 0.4897 11 6 2.5464 -4.9644 0.0296 12 1 1.4852 -5.0375 -0.2081 13 6 3.3663 -5.6005 -1.0947 14 6 2.8220 -5.6871 1.3230 15 1 3.2344 -5.1500 2.1644 16 6 2.5487 -7.0341 1.4319 17 7 2.7887 -7.6646 2.5607 18 14 1.8361 -7.9631 -0.0236 19 1 2.9414 -8.5077 -0.8523 20 1 0.9895 -9.0797 0.4682 21 1 1.0108 -7.0404 -0.8439 22 1 -0.3635 0.0005 1.0275 23 1 -0.3634 0.8897 -0.5144 24 1 -0.3633 -0.8903 -0.5134 25 1 1.9895 2.1011 -0.0004 26 1 4.5702 -1.2608 0.0118 27 1 4.8396 -2.9591 -0.4298 28 1 4.7893 -4.0252 0.9947 29 1 4.3062 -2.3186 1.1429 30 1 3.0889 -6.6494 -1.1980 31 1 3.1669 -5.0778 -2.0302 32 1 4.4275 -5.5274 -0.8567 33 1 2.5967 -8.6124 2.6372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528417271.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:32 Heat of formation + Delta-G solvation = -25.822934 kcal Electronic energy + Delta-G solvation = -17080.798744 eV Core-core repulsion = 14301.362015 eV Total energy + Delta-G solvation = -2779.436730 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.49274 -40.59810 -37.32441 -35.05610 -34.63992 -32.92751 -30.76310 -28.37978 -27.79024 -27.19801 -24.91998 -22.41141 -21.41734 -20.23879 -18.92519 -18.17138 -17.58131 -17.09792 -17.05398 -16.26892 -15.77349 -15.37841 -14.87399 -14.52569 -14.34376 -14.14311 -14.03913 -13.82674 -13.58217 -13.44516 -13.07061 -12.78276 -12.61457 -12.35895 -12.06439 -11.60736 -11.39182 -10.84282 -10.80210 -10.50620 -9.56315 -9.45502 -8.37181 -6.42001 0.43100 1.12134 1.24425 1.34632 1.43218 1.99433 2.26070 2.27954 2.41185 2.98280 3.61694 3.70834 3.98141 4.24525 4.35276 4.45099 4.50761 4.53692 4.55458 4.68328 4.79561 4.91174 4.94690 5.01772 5.07339 5.09615 5.30641 5.46772 5.55897 5.68335 6.04380 6.19031 6.59126 6.67497 7.18767 7.33404 8.78865 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039304 B = 0.006909 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.224296 B = 4051.984671 C = 4305.197564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.171 4.171 3 C -0.027 4.027 4 O -0.171 6.171 5 C 0.026 3.974 6 C -0.266 4.266 7 C 0.566 3.434 8 O -0.596 6.596 9 N -0.591 5.591 10 C 0.059 3.941 11 C 0.233 3.767 12 H 0.028 0.972 13 C -0.152 4.152 14 C -0.528 4.528 15 H 0.045 0.955 16 C 0.023 3.977 17 N -0.938 5.938 18 Si 0.942 3.058 19 H -0.250 1.250 20 H -0.295 1.295 21 H -0.265 1.265 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.048 0.952 25 H 0.250 0.750 26 H 0.256 0.744 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.242 16.597 -7.851 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.173 4.173 3 C -0.092 4.092 4 O -0.066 6.066 5 C -0.044 4.044 6 C -0.270 4.270 7 C 0.357 3.643 8 O -0.479 6.479 9 N -0.321 5.321 10 C -0.083 4.083 11 C 0.129 3.871 12 H 0.046 0.954 13 C -0.210 4.210 14 C -0.566 4.566 15 H 0.063 0.937 16 C -0.176 4.176 17 N -0.578 5.578 18 Si 0.769 3.231 19 H -0.175 1.175 20 H -0.223 1.223 21 H -0.190 1.190 22 H 0.082 0.918 23 H 0.115 0.885 24 H 0.067 0.933 25 H 0.266 0.734 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.904 16.451 -7.831 18.633 hybrid contribution -0.761 -1.310 0.011 1.515 sum 3.143 15.140 -7.820 17.328 Atomic orbital electron populations 1.20176 0.88627 1.02984 1.02206 1.21699 0.97833 0.90994 1.06766 1.24365 0.78900 1.00447 1.05503 1.83847 1.29852 1.22269 1.70608 1.26040 0.99404 0.80852 0.98074 1.21500 0.95631 0.93053 1.16830 1.17929 0.84850 0.85232 0.76326 1.90658 1.19671 1.83948 1.53609 1.47768 1.10498 1.06178 1.67641 1.22424 0.81459 1.02629 1.01743 1.18984 0.95497 0.78213 0.94366 0.95390 1.22306 1.01862 0.99179 0.97674 1.21360 1.43101 0.94289 0.97893 0.93672 1.25646 0.95071 0.98388 0.98449 1.69997 1.49675 1.10754 1.27364 0.85973 0.79244 0.78138 0.79791 1.17484 1.22267 1.18955 0.91771 0.88543 0.93318 0.73389 0.72923 0.88919 0.90510 0.89422 0.93879 0.92504 0.90628 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.27 10.08 71.23 0.72 -1.56 16 2 C -0.17 -4.85 6.37 -18.49 -0.12 -4.97 16 3 C -0.03 -0.53 11.96 66.89 0.80 0.27 16 4 O -0.17 -3.60 10.52 4.45 0.05 -3.56 16 5 C 0.03 0.61 10.05 67.39 0.68 1.29 16 6 C -0.27 -8.78 6.12 -18.99 -0.12 -8.89 16 7 C 0.57 24.46 7.66 86.65 0.66 25.13 16 8 O -0.60 -30.86 14.73 -4.05 -0.06 -30.92 16 9 N -0.59 -24.67 2.75 -830.75 -2.29 -26.96 16 10 C 0.06 1.75 7.61 127.77 0.97 2.72 16 11 C 0.23 11.41 2.21 44.24 0.10 11.51 16 12 H 0.03 1.57 5.98 -2.39 -0.01 1.56 16 13 C -0.15 -6.25 8.67 71.98 0.62 -5.63 16 14 C -0.53 -30.08 8.53 25.60 0.22 -29.86 16 15 H 0.05 2.80 7.68 -2.91 -0.02 2.78 16 16 C 0.02 1.36 5.45 84.66 0.46 1.82 16 17 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 18 Si 0.94 45.43 24.37 68.60 1.67 47.10 16 19 H -0.25 -10.90 6.87 99.48 0.68 -10.22 16 20 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 21 H -0.26 -12.74 6.53 99.48 0.65 -12.09 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 24 H 0.05 1.68 6.80 -2.39 -0.02 1.66 16 25 H 0.25 2.33 8.06 -2.91 -0.02 2.30 16 26 H 0.26 4.19 4.49 -2.91 -0.01 4.18 16 27 H 0.09 1.94 7.32 -2.39 -0.02 1.92 16 28 H 0.08 2.57 7.11 -2.39 -0.02 2.55 16 29 H 0.09 2.17 5.46 -2.39 -0.01 2.16 16 30 H 0.04 1.83 3.27 -2.39 -0.01 1.82 16 31 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.07 2.78 7.67 -2.39 -0.02 2.76 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -77.65 268.14 5.72 -71.93 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 1.05 Total: 8.23 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 5.00 Total: -8.17 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -1.99 Total: -84.61 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.01 Total: -34.47 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.67 Total: 47.10 kcal Total: -77.65 5.72 -71.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528417271.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.108 kcal (2) G-P(sol) polarization free energy of solvation -77.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds