Wall clock time and date at job start Sun Mar 29 2020 22:17:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.34179 * 127.02124 * 2 1
4 4 O 1.34213 * 109.12410 * 179.97438 * 3 2 1
5 5 C 1.33656 * 110.90902 * 359.76395 * 4 3 2
6 6 C 1.36415 * 108.39261 * 0.38274 * 5 4 3
7 7 C 1.47384 * 127.19060 * 179.89327 * 6 5 4
8 8 O 1.21606 * 120.00232 * 187.89321 * 7 6 5
9 9 N 1.34781 * 119.99665 * 7.90079 * 7 6 5
10 10 C 1.46496 * 120.00162 * 6.43291 * 9 7 6
11 11 C 1.46504 * 119.99622 * 186.43607 * 9 7 6
12 12 H 1.08999 * 109.47454 * 359.97438 * 11 9 7
13 13 C 1.52994 * 109.47437 * 120.00014 * 11 9 7
14 14 C 1.50701 * 109.46776 * 239.99834 * 11 9 7
15 15 H 1.08004 * 120.00139 * 359.97438 * 14 11 9
16 16 C 1.37878 * 120.00197 * 180.02562 * 14 11 9
17 17 N 1.31511 * 120.00325 * 180.02562 * 16 14 11
18 18 Si 1.86799 * 119.99807 * 359.97438 * 16 14 11
19 19 H 1.48500 * 109.46883 * 90.00182 * 18 16 14
20 20 H 1.48501 * 109.47363 * 210.00503 * 18 16 14
21 21 H 1.48505 * 109.47312 * 330.00657 * 18 16 14
22 22 H 1.08993 * 109.47990 * 270.02903 * 1 2 3
23 23 H 1.09010 * 109.47263 * 30.03624 * 1 2 3
24 24 H 1.09004 * 109.47117 * 150.02677 * 1 2 3
25 25 H 1.07999 * 125.44257 * 359.97138 * 3 2 1
26 26 H 1.08003 * 125.80549 * 180.26909 * 5 4 3
27 27 H 1.09003 * 109.47016 * 275.88020 * 10 9 7
28 28 H 1.08996 * 109.47367 * 155.88085 * 10 9 7
29 29 H 1.08995 * 109.47244 * 35.88014 * 10 9 7
30 30 H 1.08992 * 109.47556 * 179.97438 * 13 11 9
31 31 H 1.09004 * 109.46716 * 299.99643 * 13 11 9
32 32 H 1.08999 * 109.47457 * 59.99195 * 13 11 9
33 33 H 0.97000 * 120.00083 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3149 1.0713 0.0000
4 8 3.5920 0.6589 0.0006
5 6 3.6623 -0.6758 0.0061
6 6 2.3922 -1.1737 0.0007
7 6 1.9913 -2.5920 0.0016
8 8 0.8228 -2.8937 -0.1483
9 7 2.9198 -3.5546 0.1688
10 6 4.3022 -3.1911 0.4897
11 6 2.5464 -4.9644 0.0296
12 1 1.4852 -5.0375 -0.2081
13 6 3.3663 -5.6005 -1.0947
14 6 2.8220 -5.6871 1.3230
15 1 3.2344 -5.1500 2.1644
16 6 2.5487 -7.0341 1.4319
17 7 2.7887 -7.6646 2.5607
18 14 1.8361 -7.9631 -0.0236
19 1 2.9414 -8.5077 -0.8523
20 1 0.9895 -9.0797 0.4682
21 1 1.0108 -7.0404 -0.8439
22 1 -0.3635 0.0005 1.0275
23 1 -0.3634 0.8897 -0.5144
24 1 -0.3633 -0.8903 -0.5134
25 1 1.9895 2.1011 -0.0004
26 1 4.5702 -1.2608 0.0118
27 1 4.8396 -2.9591 -0.4298
28 1 4.7893 -4.0252 0.9947
29 1 4.3062 -2.3186 1.1429
30 1 3.0889 -6.6494 -1.1980
31 1 3.1669 -5.0778 -2.0302
32 1 4.4275 -5.5274 -0.8567
33 1 2.5967 -8.6124 2.6372
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000528417271.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:17:32
Heat of formation + Delta-G solvation = -25.822934 kcal
Electronic energy + Delta-G solvation = -17080.798744 eV
Core-core repulsion = 14301.362015 eV
Total energy + Delta-G solvation = -2779.436730 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 237.115 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-43.49274 -40.59810 -37.32441 -35.05610 -34.63992 -32.92751 -30.76310 -28.37978
-27.79024 -27.19801 -24.91998 -22.41141 -21.41734 -20.23879 -18.92519 -18.17138
-17.58131 -17.09792 -17.05398 -16.26892 -15.77349 -15.37841 -14.87399 -14.52569
-14.34376 -14.14311 -14.03913 -13.82674 -13.58217 -13.44516 -13.07061 -12.78276
-12.61457 -12.35895 -12.06439 -11.60736 -11.39182 -10.84282 -10.80210 -10.50620
-9.56315 -9.45502 -8.37181 -6.42001 0.43100 1.12134 1.24425 1.34632
1.43218 1.99433 2.26070 2.27954 2.41185 2.98280 3.61694 3.70834
3.98141 4.24525 4.35276 4.45099 4.50761 4.53692 4.55458 4.68328
4.79561 4.91174 4.94690 5.01772 5.07339 5.09615 5.30641 5.46772
5.55897 5.68335 6.04380 6.19031 6.59126 6.67497 7.18767 7.33404
8.78865
Molecular weight = 237.12amu
Principal moments of inertia in cm(-1)
A = 0.039304 B = 0.006909 C = 0.006502
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 712.224296 B = 4051.984671 C = 4305.197564
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C -0.171 4.171
3 C -0.027 4.027
4 O -0.171 6.171
5 C 0.026 3.974
6 C -0.266 4.266
7 C 0.566 3.434
8 O -0.596 6.596
9 N -0.591 5.591
10 C 0.059 3.941
11 C 0.233 3.767
12 H 0.028 0.972
13 C -0.152 4.152
14 C -0.528 4.528
15 H 0.045 0.955
16 C 0.023 3.977
17 N -0.938 5.938
18 Si 0.942 3.058
19 H -0.250 1.250
20 H -0.295 1.295
21 H -0.265 1.265
22 H 0.064 0.936
23 H 0.096 0.904
24 H 0.048 0.952
25 H 0.250 0.750
26 H 0.256 0.744
27 H 0.093 0.907
28 H 0.076 0.924
29 H 0.088 0.912
30 H 0.043 0.957
31 H 0.056 0.944
32 H 0.075 0.925
33 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.242 16.597 -7.851 18.844
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.173 4.173
3 C -0.092 4.092
4 O -0.066 6.066
5 C -0.044 4.044
6 C -0.270 4.270
7 C 0.357 3.643
8 O -0.479 6.479
9 N -0.321 5.321
10 C -0.083 4.083
11 C 0.129 3.871
12 H 0.046 0.954
13 C -0.210 4.210
14 C -0.566 4.566
15 H 0.063 0.937
16 C -0.176 4.176
17 N -0.578 5.578
18 Si 0.769 3.231
19 H -0.175 1.175
20 H -0.223 1.223
21 H -0.190 1.190
22 H 0.082 0.918
23 H 0.115 0.885
24 H 0.067 0.933
25 H 0.266 0.734
26 H 0.271 0.729
27 H 0.111 0.889
28 H 0.095 0.905
29 H 0.106 0.894
30 H 0.061 0.939
31 H 0.075 0.925
32 H 0.094 0.906
33 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 3.904 16.451 -7.831 18.633
hybrid contribution -0.761 -1.310 0.011 1.515
sum 3.143 15.140 -7.820 17.328
Atomic orbital electron populations
1.20176 0.88627 1.02984 1.02206 1.21699 0.97833 0.90994 1.06766
1.24365 0.78900 1.00447 1.05503 1.83847 1.29852 1.22269 1.70608
1.26040 0.99404 0.80852 0.98074 1.21500 0.95631 0.93053 1.16830
1.17929 0.84850 0.85232 0.76326 1.90658 1.19671 1.83948 1.53609
1.47768 1.10498 1.06178 1.67641 1.22424 0.81459 1.02629 1.01743
1.18984 0.95497 0.78213 0.94366 0.95390 1.22306 1.01862 0.99179
0.97674 1.21360 1.43101 0.94289 0.97893 0.93672 1.25646 0.95071
0.98388 0.98449 1.69997 1.49675 1.10754 1.27364 0.85973 0.79244
0.78138 0.79791 1.17484 1.22267 1.18955 0.91771 0.88543 0.93318
0.73389 0.72923 0.88919 0.90510 0.89422 0.93879 0.92504 0.90628
0.92186
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -2.27 10.08 71.23 0.72 -1.56 16
2 C -0.17 -4.85 6.37 -18.49 -0.12 -4.97 16
3 C -0.03 -0.53 11.96 66.89 0.80 0.27 16
4 O -0.17 -3.60 10.52 4.45 0.05 -3.56 16
5 C 0.03 0.61 10.05 67.39 0.68 1.29 16
6 C -0.27 -8.78 6.12 -18.99 -0.12 -8.89 16
7 C 0.57 24.46 7.66 86.65 0.66 25.13 16
8 O -0.60 -30.86 14.73 -4.05 -0.06 -30.92 16
9 N -0.59 -24.67 2.75 -830.75 -2.29 -26.96 16
10 C 0.06 1.75 7.61 127.77 0.97 2.72 16
11 C 0.23 11.41 2.21 44.24 0.10 11.51 16
12 H 0.03 1.57 5.98 -2.39 -0.01 1.56 16
13 C -0.15 -6.25 8.67 71.98 0.62 -5.63 16
14 C -0.53 -30.08 8.53 25.60 0.22 -29.86 16
15 H 0.05 2.80 7.68 -2.91 -0.02 2.78 16
16 C 0.02 1.36 5.45 84.66 0.46 1.82 16
17 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16
18 Si 0.94 45.43 24.37 68.60 1.67 47.10 16
19 H -0.25 -10.90 6.87 99.48 0.68 -10.22 16
20 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16
21 H -0.26 -12.74 6.53 99.48 0.65 -12.09 16
22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16
23 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16
24 H 0.05 1.68 6.80 -2.39 -0.02 1.66 16
25 H 0.25 2.33 8.06 -2.91 -0.02 2.30 16
26 H 0.26 4.19 4.49 -2.91 -0.01 4.18 16
27 H 0.09 1.94 7.32 -2.39 -0.02 1.92 16
28 H 0.08 2.57 7.11 -2.39 -0.02 2.55 16
29 H 0.09 2.17 5.46 -2.39 -0.01 2.16 16
30 H 0.04 1.83 3.27 -2.39 -0.01 1.82 16
31 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16
32 H 0.07 2.78 7.67 -2.39 -0.02 2.76 16
33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16
Total: -1.00 -77.65 268.14 5.72 -71.93
By element:
Atomic # 1 Polarization: 7.18 SS G_CDS: 1.05 Total: 8.23 kcal
Atomic # 6 Polarization: -13.17 SS G_CDS: 5.00 Total: -8.17 kcal
Atomic # 7 Polarization: -82.63 SS G_CDS: -1.99 Total: -84.61 kcal
Atomic # 8 Polarization: -34.46 SS G_CDS: -0.01 Total: -34.47 kcal
Atomic # 14 Polarization: 45.43 SS G_CDS: 1.67 Total: 47.10 kcal
Total: -77.65 5.72 -71.93 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000528417271.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.108 kcal
(2) G-P(sol) polarization free energy of solvation -77.650 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.542 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.719 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.931 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.823 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds