Wall clock time and date at job start Sun Mar 29 2020 22:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21609 * 119.99922 * 0.02562 * 14 13 3 16 16 C 1.47380 * 119.99835 * 180.02562 * 14 13 3 17 17 C 1.36416 * 127.19262 * 359.68425 * 16 14 13 18 18 O 1.33657 * 108.39649 * 179.89390 * 17 16 14 19 19 C 1.34218 * 110.90557 * 0.38902 * 18 17 16 20 20 C 1.34169 * 109.12701 * 359.76034 * 19 18 17 21 21 C 1.50704 * 127.02437 * 179.97438 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 28 28 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 29 29 H 1.07996 * 125.80201 * 0.02562 * 17 16 14 30 30 H 1.08003 * 125.43806 * 179.76004 * 19 18 17 31 31 H 1.08999 * 109.47571 * 270.02802 * 21 20 19 32 32 H 1.09004 * 109.46567 * 30.02947 * 21 20 19 33 33 H 1.09002 * 109.47281 * 150.02392 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3413 2.6325 -0.4315 16 6 0.0452 3.3229 -2.6263 17 6 0.7964 3.4490 -3.7580 18 8 0.0765 4.1084 -4.6709 19 6 -1.1306 4.4355 -4.1839 20 6 -1.2326 3.9867 -2.9236 21 6 -2.4150 4.1336 -2.0008 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 5.8770 0.4816 2.1128 28 1 2.2720 2.1232 -1.9977 29 1 1.8013 3.0773 -3.8939 30 1 -1.8975 4.9741 -4.7207 31 1 -2.3189 5.0581 -1.4313 32 1 -3.3328 4.1625 -2.5882 33 1 -2.4486 3.2866 -1.3156 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529035381.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:30 Heat of formation + Delta-G solvation = -28.035925 kcal Electronic energy + Delta-G solvation = -16958.738295 eV Core-core repulsion = 14179.205603 eV Total energy + Delta-G solvation = -2779.532692 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.42902 -38.96333 -35.35249 -33.62985 -32.51675 -31.75955 -30.04241 -27.44696 -27.11969 -23.60867 -22.50224 -20.75136 -20.02185 -19.49532 -18.00996 -16.56347 -16.10640 -15.62047 -15.40806 -14.75945 -14.44424 -13.99716 -13.39672 -13.12338 -12.99562 -12.83498 -12.39545 -12.34244 -11.91610 -11.77544 -11.39635 -11.08214 -10.90164 -10.62925 -9.93282 -9.59569 -9.32788 -9.25187 -9.16777 -8.76160 -8.60497 -8.06195 -6.22047 -4.24633 1.56408 2.16534 3.02184 3.23223 3.35285 3.40585 3.88957 3.95026 4.31105 4.65354 4.83113 5.11843 5.18235 5.51746 5.56893 5.80623 5.96222 5.97666 6.00162 6.03325 6.16381 6.19603 6.56758 6.67786 6.70689 6.84941 6.96992 7.05316 7.27366 7.30031 7.50785 8.15842 8.51771 8.75088 8.95037 9.38881 10.89975 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.037579 B = 0.006887 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.919050 B = 4064.574198 C = 4498.764723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.244 3.756 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.573 3.427 15 O -0.543 6.543 16 C -0.223 4.223 17 C 0.013 3.987 18 O -0.177 6.177 19 C -0.057 4.057 20 C -0.133 4.133 21 C -0.085 4.085 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.267 0.733 28 H 0.391 0.609 29 H 0.212 0.788 30 H 0.203 0.797 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.428 4.232 -9.953 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.140 3.860 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.359 3.641 15 O -0.423 6.423 16 C -0.228 4.228 17 C -0.057 4.057 18 O -0.072 6.072 19 C -0.123 4.123 20 C -0.135 4.135 21 C -0.142 4.142 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.225 0.775 29 H 0.228 0.772 30 H 0.220 0.780 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.712 4.218 -9.424 15.613 hybrid contribution -0.011 -0.545 0.496 0.737 sum -11.723 3.673 -8.929 15.187 Atomic orbital electron populations 1.21880 0.96913 0.99026 1.02325 1.22285 0.94409 0.99909 1.01109 1.19158 0.95628 0.88486 0.82685 0.93181 1.21042 0.88570 1.39854 1.07903 0.90210 1.24827 0.94869 0.95116 0.97665 1.69863 1.08691 1.44488 1.29830 0.86903 0.81004 0.79959 0.80890 1.20225 1.22149 1.18410 1.46050 1.14456 1.55974 1.17999 1.17235 0.82495 0.78498 0.85825 1.90719 1.51549 1.60258 1.39775 1.21743 0.96185 1.08354 0.96524 1.24485 0.97419 0.96656 0.87127 1.83751 1.24549 1.58275 1.40654 1.23621 0.87245 1.06228 0.95160 1.21441 0.96082 1.00726 0.95267 1.20216 0.92553 1.03632 0.97794 0.92885 0.92838 0.94994 0.92748 0.92300 0.92267 0.77539 0.77169 0.77999 0.91366 0.92158 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.62 16 2 C -0.14 -3.08 5.11 -26.74 -0.14 -3.22 16 3 C 0.24 5.77 1.83 -69.09 -0.13 5.64 16 4 H 0.05 1.32 6.63 -51.93 -0.34 0.97 16 5 C -0.54 -14.37 9.31 -34.44 -0.32 -14.69 16 6 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 9 Si 0.88 21.72 24.41 -169.99 -4.15 17.57 16 10 H -0.28 -6.57 6.83 56.52 0.39 -6.18 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 13 N -0.70 -13.86 5.01 -56.03 -0.28 -14.14 16 14 C 0.57 11.17 6.38 -12.54 -0.08 11.09 16 15 O -0.54 -12.05 12.54 5.27 0.07 -11.98 16 16 C -0.22 -3.57 6.31 -103.27 -0.65 -4.22 16 17 C 0.01 0.17 11.61 30.08 0.35 0.52 16 18 O -0.18 -2.18 10.52 7.63 0.08 -2.10 16 19 C -0.06 -0.64 11.96 29.30 0.35 -0.29 16 20 C -0.13 -1.88 6.37 -102.49 -0.65 -2.53 16 21 C -0.09 -1.09 10.00 36.01 0.36 -0.73 16 22 H 0.05 1.07 5.65 -51.93 -0.29 0.78 16 23 H 0.05 1.14 7.84 -51.93 -0.41 0.74 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 1.27 3.22 -51.93 -0.17 1.10 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.39 6.73 7.51 -40.82 -0.31 6.42 16 29 H 0.21 2.02 7.47 -52.49 -0.39 1.63 16 30 H 0.20 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 LS Contribution 271.92 15.07 4.10 4.10 Total: -1.00 -31.86 271.92 -4.09 -35.95 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -3.99 Total: 5.08 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -0.69 Total: -8.95 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.49 Total: -39.67 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.15 Total: -14.08 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.15 Total: 17.57 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.86 -4.09 -35.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529035381.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.916 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds