Wall clock time and date at job start Sun Mar 29 2020 22:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21609 * 119.99922 * 0.02562 * 14 13 3 16 16 C 1.47380 * 119.99835 * 180.02562 * 14 13 3 17 17 C 1.36416 * 127.19262 * 359.68425 * 16 14 13 18 18 O 1.33657 * 108.39649 * 179.89390 * 17 16 14 19 19 C 1.34218 * 110.90557 * 0.38902 * 18 17 16 20 20 C 1.34169 * 109.12701 * 359.76034 * 19 18 17 21 21 C 1.50704 * 127.02437 * 179.97438 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 28 28 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 29 29 H 1.07996 * 125.80201 * 0.02562 * 17 16 14 30 30 H 1.08003 * 125.43806 * 179.76004 * 19 18 17 31 31 H 1.08999 * 109.47571 * 270.02802 * 21 20 19 32 32 H 1.09004 * 109.46567 * 30.02947 * 21 20 19 33 33 H 1.09002 * 109.47281 * 150.02392 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3413 2.6325 -0.4315 16 6 0.0452 3.3229 -2.6263 17 6 0.7964 3.4490 -3.7580 18 8 0.0765 4.1084 -4.6709 19 6 -1.1306 4.4355 -4.1839 20 6 -1.2326 3.9867 -2.9236 21 6 -2.4150 4.1336 -2.0008 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 5.8770 0.4816 2.1128 28 1 2.2720 2.1232 -1.9977 29 1 1.8013 3.0773 -3.8939 30 1 -1.8975 4.9741 -4.7207 31 1 -2.3189 5.0581 -1.4313 32 1 -3.3328 4.1625 -2.5882 33 1 -2.4486 3.2866 -1.3156 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529035381.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:29 Heat of formation + Delta-G solvation = -50.892740 kcal Electronic energy + Delta-G solvation = -16959.729441 eV Core-core repulsion = 14179.205603 eV Total energy + Delta-G solvation = -2780.523838 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.44283 -40.55407 -37.11203 -34.71380 -34.44561 -33.45437 -31.27783 -29.31979 -28.08811 -25.17533 -24.20245 -22.19484 -21.19768 -21.06297 -19.41764 -18.29466 -17.47755 -17.09737 -16.81283 -16.20353 -15.98634 -15.49016 -15.04107 -14.58075 -14.24162 -14.10655 -13.91339 -13.73189 -13.61389 -13.37221 -12.97578 -12.78249 -12.44196 -12.37061 -11.86786 -11.40952 -11.25047 -10.87694 -10.78936 -10.48702 -9.78442 -9.55099 -8.38913 -6.44324 0.45054 1.14657 1.26348 1.34752 1.44630 2.08139 2.25472 2.45517 2.48071 2.97191 3.71157 3.73882 4.15167 4.22928 4.31093 4.38923 4.48658 4.57914 4.81881 4.83774 4.97008 5.00406 5.08849 5.10109 5.13069 5.22905 5.39858 5.49712 5.57699 5.65345 6.04433 6.15279 6.57150 6.88351 7.19081 7.45351 8.76117 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.037579 B = 0.006887 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.919050 B = 4064.574198 C = 4498.764723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.021 0.979 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.031 3.969 8 N -0.932 5.932 9 Si 0.934 3.066 10 H -0.259 1.259 11 H -0.293 1.293 12 H -0.262 1.262 13 N -0.697 5.697 14 C 0.573 3.427 15 O -0.577 6.577 16 C -0.266 4.266 17 C 0.037 3.963 18 O -0.173 6.173 19 C -0.031 4.031 20 C -0.166 4.166 21 C -0.081 4.081 22 H 0.051 0.949 23 H 0.036 0.964 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.270 0.730 28 H 0.404 0.596 29 H 0.239 0.761 30 H 0.249 0.751 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.886 4.302 -11.737 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.039 0.961 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.762 3.238 10 H -0.184 1.184 11 H -0.220 1.220 12 H -0.187 1.187 13 N -0.346 5.346 14 C 0.362 3.638 15 O -0.459 6.459 16 C -0.270 4.270 17 C -0.033 4.033 18 O -0.067 6.067 19 C -0.097 4.097 20 C -0.167 4.167 21 C -0.138 4.138 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.239 0.761 29 H 0.256 0.744 30 H 0.265 0.735 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.176 4.293 -11.247 17.847 hybrid contribution 0.446 -0.470 0.942 1.144 sum -12.730 3.823 -10.305 16.818 Atomic orbital electron populations 1.21753 0.95339 1.00493 1.01465 1.22205 0.95737 0.98457 1.01134 1.18787 0.93311 0.89618 0.83618 0.96072 1.21274 0.90185 1.38619 1.07082 0.92318 1.25516 0.95714 0.95856 0.99777 1.69964 1.10195 1.46100 1.30849 0.86065 0.79306 0.80012 0.78449 1.18446 1.22008 1.18653 1.45852 1.15305 1.56267 1.17175 1.17690 0.81582 0.77712 0.86783 1.90695 1.52362 1.61460 1.41375 1.21590 0.98445 1.10953 0.96028 1.24920 0.97872 0.94641 0.85888 1.83811 1.24956 1.57674 1.40263 1.24371 0.87073 1.04139 0.94084 1.21691 0.95924 1.02286 0.96841 1.20165 0.93916 1.02049 0.97622 0.93031 0.94468 0.92240 0.93696 0.91174 0.92047 0.76064 0.74450 0.73537 0.91615 0.88897 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.51 71.98 0.61 -4.66 16 2 C -0.14 -5.96 5.11 30.59 0.16 -5.81 16 3 C 0.25 11.97 1.83 44.24 0.08 12.05 16 4 H 0.02 1.15 6.63 -2.39 -0.02 1.13 16 5 C -0.53 -29.02 9.31 25.60 0.24 -28.78 16 6 H 0.06 3.37 7.98 -2.91 -0.02 3.34 16 7 C 0.03 1.77 5.45 84.66 0.46 2.23 16 8 N -0.93 -55.79 13.96 21.45 0.30 -55.49 16 9 Si 0.93 44.96 24.41 68.60 1.67 46.63 16 10 H -0.26 -11.69 6.83 99.48 0.68 -11.01 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 12 H -0.26 -12.60 6.53 99.48 0.65 -11.96 16 13 N -0.70 -27.66 5.01 -449.44 -2.25 -29.91 16 14 C 0.57 22.36 6.38 86.65 0.55 22.92 16 15 O -0.58 -26.12 12.54 -4.06 -0.05 -26.17 16 16 C -0.27 -8.16 6.31 -18.99 -0.12 -8.28 16 17 C 0.04 0.86 11.61 67.39 0.78 1.64 16 18 O -0.17 -3.61 10.52 4.40 0.05 -3.56 16 19 C -0.03 -0.59 11.96 66.89 0.80 0.21 16 20 C -0.17 -4.34 6.37 -18.49 -0.12 -4.46 16 21 C -0.08 -1.99 10.00 71.24 0.71 -1.27 16 22 H 0.05 2.04 5.65 -2.39 -0.01 2.03 16 23 H 0.04 1.57 7.84 -2.39 -0.02 1.55 16 24 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.04 2.04 3.22 -2.39 -0.01 2.03 16 26 H 0.07 2.86 8.14 -2.39 -0.02 2.85 16 27 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.40 13.67 7.51 -92.71 -0.70 12.97 16 29 H 0.24 3.86 7.47 -2.91 -0.02 3.84 16 30 H 0.25 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.62 6.91 -2.39 -0.02 1.60 16 Total: -1.00 -70.08 271.92 4.23 -65.86 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.35 Total: 16.86 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 4.16 Total: -14.22 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -1.95 Total: -85.40 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: 0.00 Total: -29.73 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.67 Total: 46.63 kcal Total: -70.08 4.23 -65.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529035381.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.964 kcal (2) G-P(sol) polarization free energy of solvation -70.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds