Wall clock time and date at job start Sun Mar 29 2020 22:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46856 * 89.99940 * 6 5 4 8 8 O 1.21274 * 120.00346 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99649 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00177 * 359.97438 * 9 7 6 11 11 C 1.46501 * 119.99947 * 180.02562 * 9 7 6 12 12 C 1.50705 * 109.47256 * 89.99955 * 11 9 7 13 13 H 1.08002 * 120.00110 * 359.97438 * 12 11 9 14 14 C 1.37870 * 120.00187 * 180.02562 * 12 11 9 15 15 N 1.31518 * 120.00024 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00313 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47329 * 89.99489 * 16 14 12 18 18 H 1.48494 * 109.47575 * 209.99986 * 16 14 12 19 19 H 1.48503 * 109.46678 * 329.99882 * 16 14 12 20 20 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 21 21 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 22 22 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 23 23 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 24 24 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 25 25 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 27 27 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 28 28 H 1.09004 * 109.47297 * 90.00354 * 10 9 7 29 29 H 1.09005 * 109.47276 * 209.99824 * 10 9 7 30 30 H 1.09001 * 109.47304 * 330.00461 * 10 9 7 31 31 H 1.08995 * 109.47287 * 209.99769 * 11 9 7 32 32 H 1.09003 * 109.47372 * 330.00403 * 11 9 7 33 33 H 0.96998 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1607 -1.9432 1.4396 8 8 4.5351 -1.4567 2.3576 9 7 6.2055 -2.7561 1.6923 10 6 6.9616 -3.3435 0.5835 11 6 6.5845 -3.0534 3.0759 12 6 5.8423 -4.2769 3.5483 13 1 5.1565 -4.7824 2.8845 14 6 6.0380 -4.7505 4.8282 15 7 6.8727 -4.1348 5.6368 16 14 5.1174 -6.2667 5.4141 17 1 5.9175 -7.4801 5.1094 18 1 4.8951 -6.1755 6.8795 19 1 3.8078 -6.3499 4.7190 20 8 2.2923 -1.0895 0.0044 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.9666 2.1203 -0.0045 25 1 4.5212 1.2433 0.0076 26 1 4.5127 -2.5646 -0.4964 27 1 5.6061 -1.1601 -0.4949 28 1 7.7801 -2.6780 0.3090 29 1 7.3652 -4.3086 0.8898 30 1 6.3021 -3.4808 -0.2735 31 1 7.6577 -3.2371 3.1272 32 1 6.3301 -2.2059 3.7124 33 1 7.0106 -4.4682 6.5372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533580697.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:31 Heat of formation + Delta-G solvation = -24.414218 kcal Electronic energy + Delta-G solvation = -16495.692247 eV Core-core repulsion = 13716.316604 eV Total energy + Delta-G solvation = -2779.375643 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.35399 -38.87823 -34.82782 -32.97913 -32.91488 -32.41489 -29.92887 -27.68371 -25.86980 -24.80456 -22.62966 -21.54209 -20.04078 -18.54638 -16.67395 -16.49682 -16.32010 -15.54912 -15.15601 -14.83049 -14.33141 -13.75571 -13.36447 -13.01342 -12.82569 -12.59123 -12.55600 -12.26352 -12.16084 -11.85210 -11.84019 -11.37589 -11.17201 -10.88275 -10.56259 -10.15079 -9.63281 -9.62328 -9.00792 -8.42873 -8.01837 -7.65532 -6.03621 -4.08337 1.91678 2.81628 3.07594 3.30683 3.36766 3.38965 3.44861 4.03529 4.45982 4.74332 5.02467 5.19368 5.23478 5.25776 5.31877 5.42457 5.45637 5.55785 5.65044 5.71602 5.91460 6.01414 6.16486 6.19958 6.35787 6.75519 7.04788 7.40679 7.44338 7.53158 7.92779 8.23828 8.38578 8.90289 9.07591 9.56730 11.04545 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028879 B = 0.005957 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.336955 B = 4699.212366 C = 5211.318224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.021 4.021 3 C -0.211 4.211 4 C -0.202 4.202 5 C 0.019 3.981 6 C -0.064 4.064 7 C 0.504 3.496 8 O -0.530 6.530 9 N -0.603 5.603 10 C 0.081 3.919 11 C 0.245 3.755 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 O -0.170 6.170 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.144 0.856 25 H 0.145 0.855 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 6.486 -14.501 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.230 4.230 4 C -0.221 4.221 5 C -0.032 4.032 6 C -0.104 4.104 7 C 0.290 3.710 8 O -0.407 6.407 9 N -0.335 5.335 10 C -0.063 4.063 11 C 0.126 3.874 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 O -0.066 6.066 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.162 0.838 25 H 0.162 0.838 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.921 6.429 -13.797 16.333 hybrid contribution -0.250 -0.726 0.417 0.874 sum -6.171 5.703 -13.380 15.800 Atomic orbital electron populations 1.20251 0.85461 1.03987 1.03000 1.22330 0.93870 0.84299 1.06616 1.21460 0.92748 0.99058 1.09708 1.21427 0.98079 0.93689 1.08880 1.21604 0.82581 0.93979 1.04991 1.20243 0.92975 0.99354 0.97788 1.20064 0.81134 0.80044 0.89795 1.90708 1.51855 1.51834 1.46274 1.48142 1.30082 1.45892 1.09411 1.21681 0.95728 0.99349 0.89554 1.19306 0.95571 0.97077 0.75428 1.21439 1.25405 1.11304 0.98399 0.92474 1.24936 0.95350 0.97455 0.96375 1.69934 1.35863 1.40169 1.07453 0.86492 0.80223 0.82713 0.77982 1.20599 1.21056 1.19904 1.83931 1.16343 1.35030 1.71339 0.90482 0.90604 0.89587 0.83818 0.83765 0.87717 0.86598 0.93558 0.90601 0.92405 0.94863 0.93811 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.42 36.00 0.38 -0.34 16 2 C -0.02 -0.31 7.32 -35.63 -0.26 -0.57 16 3 C -0.21 -3.05 10.81 -39.71 -0.43 -3.48 16 4 C -0.20 -3.18 10.81 -39.70 -0.43 -3.61 16 5 C 0.02 0.33 5.81 -35.62 -0.21 0.12 16 6 C -0.06 -0.99 4.79 -29.03 -0.14 -1.12 16 7 C 0.50 10.82 7.67 -10.99 -0.08 10.74 16 8 O -0.53 -14.11 15.61 5.56 0.09 -14.02 16 9 N -0.60 -12.90 2.86 -182.95 -0.52 -13.42 16 10 C 0.08 1.24 10.24 59.84 0.61 1.85 16 11 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 12 C -0.53 -15.22 9.39 -34.44 -0.32 -15.54 16 13 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 20 O -0.17 -3.02 10.65 5.72 0.06 -2.96 16 21 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 25 H 0.14 1.98 8.06 -52.48 -0.42 1.55 16 26 H 0.10 1.40 7.40 -51.93 -0.38 1.02 16 27 H 0.12 1.36 8.11 -51.93 -0.42 0.94 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 31 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 291.45 15.07 4.39 4.39 Total: -1.00 -35.68 291.45 -5.72 -41.41 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.44 Total: -2.56 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.01 Total: -3.79 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.21 Total: -39.65 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.15 Total: -16.98 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.68 -5.72 -41.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533580697.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.992 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds