Wall clock time and date at job start Sun Mar 29 2020 22:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46856 * 89.99940 * 6 5 4 8 8 O 1.21274 * 120.00346 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99649 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00177 * 359.97438 * 9 7 6 11 11 C 1.46501 * 119.99947 * 180.02562 * 9 7 6 12 12 C 1.50705 * 109.47256 * 89.99955 * 11 9 7 13 13 H 1.08002 * 120.00110 * 359.97438 * 12 11 9 14 14 C 1.37870 * 120.00187 * 180.02562 * 12 11 9 15 15 N 1.31518 * 120.00024 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00313 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47329 * 89.99489 * 16 14 12 18 18 H 1.48494 * 109.47575 * 209.99986 * 16 14 12 19 19 H 1.48503 * 109.46678 * 329.99882 * 16 14 12 20 20 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 21 21 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 22 22 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 23 23 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 24 24 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 25 25 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 27 27 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 28 28 H 1.09004 * 109.47297 * 90.00354 * 10 9 7 29 29 H 1.09005 * 109.47276 * 209.99824 * 10 9 7 30 30 H 1.09001 * 109.47304 * 330.00461 * 10 9 7 31 31 H 1.08995 * 109.47287 * 209.99769 * 11 9 7 32 32 H 1.09003 * 109.47372 * 330.00403 * 11 9 7 33 33 H 0.96998 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1607 -1.9432 1.4396 8 8 4.5351 -1.4567 2.3576 9 7 6.2055 -2.7561 1.6923 10 6 6.9616 -3.3435 0.5835 11 6 6.5845 -3.0534 3.0759 12 6 5.8423 -4.2769 3.5483 13 1 5.1565 -4.7824 2.8845 14 6 6.0380 -4.7505 4.8282 15 7 6.8727 -4.1348 5.6368 16 14 5.1174 -6.2667 5.4141 17 1 5.9175 -7.4801 5.1094 18 1 4.8951 -6.1755 6.8795 19 1 3.8078 -6.3499 4.7190 20 8 2.2923 -1.0895 0.0044 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.9666 2.1203 -0.0045 25 1 4.5212 1.2433 0.0076 26 1 4.5127 -2.5646 -0.4964 27 1 5.6061 -1.1601 -0.4949 28 1 7.7801 -2.6780 0.3090 29 1 7.3652 -4.3086 0.8898 30 1 6.3021 -3.4808 -0.2735 31 1 7.6577 -3.2371 3.1272 32 1 6.3301 -2.2059 3.7124 33 1 7.0106 -4.4682 6.5372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533580697.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:30 Heat of formation + Delta-G solvation = -48.583084 kcal Electronic energy + Delta-G solvation = -16496.740288 eV Core-core repulsion = 13716.316604 eV Total energy + Delta-G solvation = -2780.423684 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.52082 -40.56706 -36.62872 -34.81991 -34.11867 -33.83558 -31.18484 -29.48283 -27.33080 -26.20194 -24.48778 -22.72600 -21.24990 -20.13341 -18.72078 -18.07777 -17.67542 -16.95046 -16.77434 -16.47906 -15.98407 -15.09504 -14.61731 -14.37275 -14.09988 -13.83912 -13.72297 -13.68531 -13.52356 -13.43409 -13.08925 -13.00886 -12.80183 -12.58384 -12.41721 -12.22915 -11.72743 -10.84441 -10.69722 -10.65949 -9.44533 -9.17579 -8.24550 -6.39554 0.73165 1.34385 1.37819 1.47969 1.66047 1.77843 1.99607 2.33972 2.52498 3.04932 3.59506 3.85489 4.00520 4.14765 4.25820 4.38771 4.49688 4.59246 4.71905 4.75724 4.86209 4.90644 4.97605 5.03018 5.08510 5.20851 5.31504 5.53710 5.68473 5.81855 6.03977 6.25004 6.66915 6.74815 7.25665 7.43974 8.82611 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028879 B = 0.005957 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.336955 B = 4699.212366 C = 5211.318224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.032 4.032 3 C -0.224 4.224 4 C -0.207 4.207 5 C -0.017 4.017 6 C -0.046 4.046 7 C 0.494 3.506 8 O -0.596 6.596 9 N -0.608 5.608 10 C 0.073 3.927 11 C 0.258 3.742 12 C -0.545 4.545 13 H 0.052 0.948 14 C 0.007 3.993 15 N -0.928 5.928 16 Si 0.968 3.032 17 H -0.260 1.260 18 H -0.280 1.280 19 H -0.276 1.276 20 O -0.197 6.197 21 H 0.102 0.898 22 H 0.072 0.928 23 H 0.106 0.894 24 H 0.171 0.829 25 H 0.160 0.840 26 H 0.130 0.870 27 H 0.160 0.840 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.028 0.972 32 H -0.005 1.005 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 6.072 -16.380 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.242 4.242 4 C -0.226 4.226 5 C -0.067 4.067 6 C -0.085 4.085 7 C 0.283 3.717 8 O -0.477 6.477 9 N -0.340 5.340 10 C -0.068 4.068 11 C 0.137 3.863 12 C -0.583 4.583 13 H 0.070 0.930 14 C -0.192 4.192 15 N -0.568 5.568 16 Si 0.792 3.208 17 H -0.184 1.184 18 H -0.205 1.205 19 H -0.201 1.201 20 O -0.095 6.095 21 H 0.120 0.880 22 H 0.091 0.909 23 H 0.125 0.875 24 H 0.189 0.811 25 H 0.178 0.822 26 H 0.148 0.852 27 H 0.177 0.823 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.046 0.954 32 H 0.014 0.986 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.532 6.001 -15.735 18.063 hybrid contribution -0.053 -0.520 0.987 1.117 sum -6.584 5.480 -14.748 17.056 Atomic orbital electron populations 1.20473 0.82481 1.04821 1.04866 1.23277 0.95738 0.83842 1.05312 1.21875 0.92278 1.00436 1.09647 1.21833 0.99396 0.93703 1.07703 1.21970 0.82880 0.94896 1.06915 1.20250 0.93958 1.00923 0.93388 1.21158 0.79947 0.78694 0.91929 1.90665 1.53915 1.54226 1.48903 1.48167 1.30811 1.46161 1.08825 1.22041 0.96971 0.99268 0.88559 1.18771 0.94858 0.94475 0.78212 1.21711 1.25631 1.12060 0.98934 0.93019 1.25868 0.96130 1.00723 0.96454 1.70051 1.37077 1.41785 1.07893 0.85411 0.78759 0.79241 0.77374 1.18449 1.20541 1.20054 1.83911 1.17031 1.36570 1.71972 0.87995 0.90949 0.87510 0.81106 0.82228 0.85167 0.82292 0.90438 0.91473 0.88377 0.95409 0.98643 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.42 71.23 0.74 -0.55 16 2 C -0.03 -0.92 7.32 24.83 0.18 -0.74 16 3 C -0.22 -6.16 10.81 22.19 0.24 -5.92 16 4 C -0.21 -6.31 10.81 22.19 0.24 -6.07 16 5 C -0.02 -0.56 5.81 24.84 0.14 -0.41 16 6 C -0.05 -1.34 4.79 29.10 0.14 -1.20 16 7 C 0.49 21.27 7.67 87.66 0.67 21.94 16 8 O -0.60 -32.99 15.61 -3.01 -0.05 -33.03 16 9 N -0.61 -26.01 2.86 -851.14 -2.43 -28.44 16 10 C 0.07 2.07 10.24 127.77 1.31 3.38 16 11 C 0.26 14.25 5.16 85.63 0.44 14.69 16 12 C -0.54 -32.19 9.39 25.60 0.24 -31.95 16 13 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 14 C 0.01 0.42 5.46 84.65 0.46 0.89 16 15 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 16 Si 0.97 45.78 29.54 68.60 2.03 47.80 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 20 O -0.20 -6.93 10.65 -2.45 -0.03 -6.96 16 21 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 22 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.17 3.55 8.06 -2.91 -0.02 3.52 16 25 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 26 H 0.13 3.07 7.40 -2.39 -0.02 3.06 16 27 H 0.16 3.13 8.11 -2.39 -0.02 3.11 16 28 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.07 2.03 8.07 -2.38 -0.02 2.01 16 30 H 0.10 1.99 6.44 -2.39 -0.02 1.98 16 31 H 0.03 1.53 8.07 -2.39 -0.02 1.52 16 32 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -81.79 291.45 5.71 -76.08 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.09 Total: 7.32 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 4.81 Total: -5.94 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -2.15 Total: -85.27 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.07 Total: -39.99 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -81.79 5.71 -76.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533580697.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.495 kcal (2) G-P(sol) polarization free energy of solvation -81.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds