Wall clock time and date at job start Sun Mar 29 2020 22:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34525 * 125.78926 * 2 1 4 4 C 1.41382 * 106.83945 * 180.02562 * 3 2 1 5 5 C 1.34511 * 106.83988 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.78579 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47404 * 89.99722 * 6 5 4 8 8 O 1.21279 * 119.99997 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00179 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00376 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46725 * 35.00314 * 10 9 7 12 12 C 1.52997 * 109.47188 * 275.00479 * 10 9 7 13 13 C 1.50697 * 109.47081 * 155.00043 * 10 9 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47262 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46882 * 119.99668 * 17 15 13 20 20 H 1.48493 * 109.47394 * 239.99732 * 17 15 13 21 21 O 1.34297 * 108.42359 * 0.26369 * 5 4 3 22 22 H 1.09002 * 109.46783 * 90.00136 * 1 2 3 23 23 H 1.08997 * 109.47290 * 209.99779 * 1 2 3 24 24 H 1.08998 * 109.47240 * 330.00437 * 1 2 3 25 25 H 1.08001 * 126.57935 * 0.05154 * 3 2 1 26 26 H 1.07997 * 126.57726 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.47463 * 329.99238 * 6 5 4 28 28 H 1.09009 * 109.47197 * 210.00015 * 6 5 4 29 29 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 31 31 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 32 32 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 33 33 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 6 5.1672 -1.9460 1.4205 8 8 4.5451 -1.4622 2.3423 9 7 6.2125 -2.7603 1.6669 10 6 6.5985 -3.0596 3.0480 11 1 5.7059 -3.1108 3.6716 12 6 7.5224 -1.9573 3.5697 13 6 7.3192 -4.3822 3.0929 14 1 7.4746 -4.9436 2.1834 15 6 7.7801 -4.8757 4.2950 16 7 7.5913 -4.1919 5.4024 17 14 8.6741 -6.5150 4.3505 18 1 8.7580 -7.0798 2.9797 19 1 10.0442 -6.3136 4.8870 20 1 7.9317 -7.4543 5.2289 21 8 2.2925 -1.0893 -0.0055 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9666 2.1205 0.0008 26 1 4.5212 1.2434 -0.0004 27 1 5.6040 -1.1588 -0.5144 28 1 4.5106 -2.5634 -0.5140 29 1 6.7099 -3.1476 0.9295 30 1 8.4150 -1.9060 2.9461 31 1 7.8092 -2.1798 4.5975 32 1 7.0011 -1.0005 3.5372 33 1 7.9153 -4.5393 6.2481 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533582414.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:40 Heat of formation + Delta-G solvation = -35.332510 kcal Electronic energy + Delta-G solvation = -16333.373932 eV Core-core repulsion = 13553.524836 eV Total energy + Delta-G solvation = -2779.849096 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.39085 -38.79571 -34.83505 -32.99827 -32.80753 -32.32283 -30.12088 -28.44579 -25.27793 -24.86828 -21.72254 -21.24482 -19.98478 -19.40422 -17.31713 -16.45939 -16.00996 -15.40464 -15.12754 -14.71093 -14.31846 -13.84535 -13.24575 -13.10909 -12.80797 -12.62901 -12.45011 -12.39924 -12.05313 -11.72353 -11.41172 -11.08782 -10.94443 -10.71244 -10.30206 -10.24164 -9.66954 -9.11994 -9.03827 -8.55804 -8.06093 -7.91878 -6.12346 -4.21809 1.87914 2.78463 3.03517 3.23703 3.31345 3.33901 3.38155 4.16027 4.40478 4.70827 4.99730 5.19742 5.20022 5.24333 5.38592 5.46170 5.51929 5.57568 5.67926 5.98837 6.13799 6.32931 6.72199 6.82880 6.96706 7.15328 7.36613 7.45559 7.55930 7.69278 7.91612 8.14956 8.64993 8.77955 9.11670 9.45856 10.93705 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.051399 B = 0.004694 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.627916 B = 5963.857713 C = 6038.060355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.022 4.022 3 C -0.210 4.210 4 C -0.201 4.201 5 C 0.019 3.981 6 C -0.066 4.066 7 C 0.501 3.499 8 O -0.544 6.544 9 N -0.708 5.708 10 C 0.263 3.737 11 H 0.048 0.952 12 C -0.147 4.147 13 C -0.533 4.533 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.902 3.098 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 O -0.171 6.171 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.389 0.611 30 H 0.026 0.974 31 H 0.090 0.910 32 H 0.014 0.986 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.641 6.783 -12.368 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.230 4.230 4 C -0.220 4.220 5 C -0.031 4.031 6 C -0.106 4.106 7 C 0.285 3.715 8 O -0.423 6.423 9 N -0.357 5.357 10 C 0.162 3.838 11 H 0.066 0.934 12 C -0.205 4.205 13 C -0.572 4.572 14 H 0.080 0.920 15 C -0.138 4.138 16 N -0.521 5.521 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 O -0.067 6.067 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.104 0.896 25 H 0.162 0.838 26 H 0.163 0.837 27 H 0.136 0.864 28 H 0.124 0.876 29 H 0.222 0.778 30 H 0.046 0.954 31 H 0.108 0.892 32 H 0.033 0.967 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.137 6.807 -11.467 15.622 hybrid contribution 0.917 -0.823 -0.193 1.248 sum -7.220 5.984 -11.660 14.963 Atomic orbital electron populations 1.20248 0.85437 1.03959 1.03031 1.22330 0.93861 0.84293 1.06691 1.21477 0.92765 0.99086 1.09632 1.21443 0.98091 0.93742 1.08739 1.21567 0.82537 0.93967 1.05057 1.20223 0.93111 0.99617 0.97684 1.20184 0.81355 0.80131 0.89857 1.90696 1.53574 1.52043 1.45943 1.46494 1.30675 1.46902 1.11604 1.18760 0.95139 0.93356 0.76551 0.93399 1.22075 0.98192 0.96327 1.03940 1.21257 1.37717 1.03992 0.94214 0.91966 1.24898 0.95793 0.97696 0.95367 1.69914 1.45766 1.37879 0.98530 0.86386 0.79277 0.83223 0.78161 1.19720 1.20871 1.20874 1.83920 1.16351 1.35047 1.71426 0.90471 0.90633 0.89579 0.83808 0.83736 0.86432 0.87629 0.77820 0.95434 0.89154 0.96659 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.42 36.00 0.38 -0.30 16 2 C -0.02 -0.31 7.32 -35.62 -0.26 -0.57 16 3 C -0.21 -2.96 10.81 -39.70 -0.43 -3.39 16 4 C -0.20 -3.09 10.81 -39.70 -0.43 -3.52 16 5 C 0.02 0.32 5.81 -35.62 -0.21 0.11 16 6 C -0.07 -0.97 6.23 -29.03 -0.18 -1.15 16 7 C 0.50 10.16 7.79 -10.99 -0.09 10.08 16 8 O -0.54 -13.67 15.70 5.56 0.09 -13.59 16 9 N -0.71 -14.71 5.07 -54.94 -0.28 -14.99 16 10 C 0.26 6.79 2.56 -69.09 -0.18 6.61 16 11 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 12 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 13 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 16 N -0.88 -25.08 11.32 55.43 0.63 -24.46 16 17 Si 0.90 20.66 29.54 -169.99 -5.02 15.63 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 O -0.17 -2.90 10.65 5.73 0.06 -2.84 16 22 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 26 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 27 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.11 1.30 8.14 -51.92 -0.42 0.88 16 29 H 0.39 6.76 8.54 -40.82 -0.35 6.41 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 289.98 15.07 4.37 4.37 Total: -1.00 -33.10 289.98 -6.00 -39.11 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.40 Total: 5.04 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.45 Total: -8.28 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.35 Total: -39.44 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.15 Total: -16.43 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.10 -6.00 -39.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533582414.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.775 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds