Wall clock time and date at job start Sun Mar 29 2020 22:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34525 * 125.78926 * 2 1 4 4 C 1.41382 * 106.83945 * 180.02562 * 3 2 1 5 5 C 1.34511 * 106.83988 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.78579 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47404 * 89.99722 * 6 5 4 8 8 O 1.21279 * 119.99997 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00179 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00376 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46725 * 35.00314 * 10 9 7 12 12 C 1.52997 * 109.47188 * 275.00479 * 10 9 7 13 13 C 1.50697 * 109.47081 * 155.00043 * 10 9 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47262 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46882 * 119.99668 * 17 15 13 20 20 H 1.48493 * 109.47394 * 239.99732 * 17 15 13 21 21 O 1.34297 * 108.42359 * 0.26369 * 5 4 3 22 22 H 1.09002 * 109.46783 * 90.00136 * 1 2 3 23 23 H 1.08997 * 109.47290 * 209.99779 * 1 2 3 24 24 H 1.08998 * 109.47240 * 330.00437 * 1 2 3 25 25 H 1.08001 * 126.57935 * 0.05154 * 3 2 1 26 26 H 1.07997 * 126.57726 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.47463 * 329.99238 * 6 5 4 28 28 H 1.09009 * 109.47197 * 210.00015 * 6 5 4 29 29 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 31 31 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 32 32 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 33 33 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 6 5.1672 -1.9460 1.4205 8 8 4.5451 -1.4622 2.3423 9 7 6.2125 -2.7603 1.6669 10 6 6.5985 -3.0596 3.0480 11 1 5.7059 -3.1108 3.6716 12 6 7.5224 -1.9573 3.5697 13 6 7.3192 -4.3822 3.0929 14 1 7.4746 -4.9436 2.1834 15 6 7.7801 -4.8757 4.2950 16 7 7.5913 -4.1919 5.4024 17 14 8.6741 -6.5150 4.3505 18 1 8.7580 -7.0798 2.9797 19 1 10.0442 -6.3136 4.8870 20 1 7.9317 -7.4543 5.2289 21 8 2.2925 -1.0893 -0.0055 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9666 2.1205 0.0008 26 1 4.5212 1.2434 -0.0004 27 1 5.6040 -1.1588 -0.5144 28 1 4.5106 -2.5634 -0.5140 29 1 6.7099 -3.1476 0.9295 30 1 8.4150 -1.9060 2.9461 31 1 7.8092 -2.1798 4.5975 32 1 7.0011 -1.0005 3.5372 33 1 7.9153 -4.5393 6.2481 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533582414.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:40 Heat of formation + Delta-G solvation = -57.889740 kcal Electronic energy + Delta-G solvation = -16334.352087 eV Core-core repulsion = 13553.524836 eV Total energy + Delta-G solvation = -2780.827251 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.51859 -40.49582 -36.75899 -34.39036 -34.11460 -33.83872 -31.51930 -30.02538 -27.35192 -26.02257 -23.24055 -22.65337 -21.38044 -20.96260 -19.04671 -17.77195 -17.58729 -16.93812 -16.80870 -16.19286 -15.88896 -15.18285 -14.71039 -14.36200 -14.20176 -13.77741 -13.72643 -13.70714 -13.55372 -13.07413 -12.97179 -12.81765 -12.74369 -12.45611 -12.28122 -12.11341 -11.10155 -10.89646 -10.74913 -10.60179 -9.77341 -9.17989 -8.17883 -6.35813 0.73468 1.44918 1.45767 1.58024 1.66608 1.77793 1.99841 2.37829 2.73064 3.12797 3.61827 3.99764 4.12354 4.15379 4.30906 4.45543 4.60327 4.72270 4.74577 4.86679 4.90918 4.93883 5.07989 5.09967 5.30350 5.43385 5.60437 5.67674 5.68597 5.90199 6.09134 6.24677 6.72688 6.94276 7.32136 7.55099 8.88777 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.051399 B = 0.004694 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.627916 B = 5963.857713 C = 6038.060355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.031 4.031 3 C -0.225 4.225 4 C -0.208 4.208 5 C -0.015 4.015 6 C -0.050 4.050 7 C 0.497 3.503 8 O -0.600 6.600 9 N -0.702 5.702 10 C 0.268 3.732 11 H -0.006 1.006 12 C -0.133 4.133 13 C -0.546 4.546 14 H 0.077 0.923 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.975 3.025 18 H -0.258 1.258 19 H -0.278 1.278 20 H -0.285 1.285 21 O -0.196 6.196 22 H 0.100 0.900 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.170 0.830 26 H 0.159 0.841 27 H 0.159 0.841 28 H 0.133 0.867 29 H 0.409 0.591 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.010 0.990 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 6.494 -14.398 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.244 4.244 4 C -0.228 4.228 5 C -0.065 4.065 6 C -0.089 4.089 7 C 0.284 3.716 8 O -0.481 6.481 9 N -0.351 5.351 10 C 0.165 3.835 11 H 0.012 0.988 12 C -0.192 4.192 13 C -0.584 4.584 14 H 0.095 0.905 15 C -0.187 4.187 16 N -0.558 5.558 17 Si 0.799 3.201 18 H -0.181 1.181 19 H -0.204 1.204 20 H -0.211 1.211 21 O -0.093 6.093 22 H 0.119 0.881 23 H 0.092 0.908 24 H 0.125 0.875 25 H 0.188 0.812 26 H 0.176 0.824 27 H 0.176 0.824 28 H 0.151 0.849 29 H 0.245 0.755 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.029 0.971 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.896 6.515 -13.555 16.986 hybrid contribution 0.760 -0.658 0.449 1.101 sum -7.136 5.857 -13.107 16.031 Atomic orbital electron populations 1.20471 0.82430 1.04882 1.04838 1.23273 0.95731 0.83818 1.05282 1.21883 0.92315 1.00461 1.09696 1.21834 0.99355 0.93823 1.07747 1.21928 0.82889 0.94809 1.06878 1.20223 0.93968 1.01232 0.93512 1.21167 0.79999 0.78526 0.91906 1.90668 1.55126 1.53918 1.48416 1.46214 1.31359 1.47264 1.10284 1.18354 0.92842 0.93811 0.78500 0.98849 1.21888 0.98634 0.95863 1.02777 1.21594 1.37492 1.04380 0.94910 0.90519 1.25839 0.96560 1.01403 0.94942 1.70069 1.46783 1.39760 0.99188 0.85259 0.77766 0.78394 0.78674 1.18132 1.20408 1.21116 1.83904 1.16963 1.36490 1.71985 0.88110 0.90783 0.87528 0.81210 0.82375 0.82395 0.84936 0.75490 0.93687 0.91645 0.97089 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.42 71.24 0.74 -0.46 16 2 C -0.03 -0.86 7.32 24.83 0.18 -0.68 16 3 C -0.22 -6.00 10.81 22.19 0.24 -5.76 16 4 C -0.21 -6.17 10.81 22.19 0.24 -5.93 16 5 C -0.02 -0.49 5.81 24.83 0.14 -0.34 16 6 C -0.05 -1.38 6.23 29.10 0.18 -1.19 16 7 C 0.50 20.05 7.79 87.66 0.68 20.73 16 8 O -0.60 -31.01 15.70 -3.03 -0.05 -31.05 16 9 N -0.70 -28.75 5.07 -446.11 -2.26 -31.01 16 10 C 0.27 14.09 2.56 44.24 0.11 14.21 16 11 H -0.01 -0.40 7.58 -2.39 -0.02 -0.42 16 12 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 13 C -0.55 -28.87 8.73 25.60 0.22 -28.65 16 14 H 0.08 3.75 7.74 -2.91 -0.02 3.72 16 15 C 0.01 0.67 5.30 84.66 0.45 1.12 16 16 N -0.92 -53.29 11.32 21.45 0.24 -53.05 16 17 Si 0.97 41.94 29.54 68.60 2.03 43.96 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 21 O -0.20 -6.56 10.65 -2.40 -0.03 -6.59 16 22 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 26 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 27 H 0.16 3.00 8.14 -2.38 -0.02 2.98 16 28 H 0.13 2.91 8.14 -2.38 -0.02 2.89 16 29 H 0.41 13.41 8.54 -92.70 -0.79 12.62 16 30 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 3.68 6.07 -2.39 -0.01 3.67 16 32 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -74.22 289.98 4.12 -70.10 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.32 Total: 20.74 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 3.86 Total: -13.10 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -2.02 Total: -84.06 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.07 Total: -37.64 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -74.22 4.12 -70.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533582414.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.210 kcal (2) G-P(sol) polarization free energy of solvation -74.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds