Wall clock time and date at job start Sun Mar 29 2020 22:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34517 * 125.78512 * 2 1 4 4 C 1.41379 * 106.83827 * 180.02562 * 3 2 1 5 5 C 1.34511 * 106.84096 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.78788 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47355 * 90.00106 * 6 5 4 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 H 1.08995 * 109.47013 * 324.72129 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72116 * 10 9 7 13 13 C 1.50696 * 109.47047 * 204.72109 * 10 9 7 14 14 H 1.08003 * 120.00092 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00258 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00015 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00053 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47198 * 90.00383 * 17 15 13 19 19 H 1.48506 * 109.47350 * 210.00533 * 17 15 13 20 20 H 1.48502 * 109.47345 * 330.00247 * 17 15 13 21 21 O 1.34296 * 125.79473 * 180.35757 * 2 1 3 22 22 H 1.09000 * 109.47400 * 89.99355 * 1 2 3 23 23 H 1.09007 * 109.46668 * 209.99734 * 1 2 3 24 24 H 1.09004 * 109.46882 * 329.98808 * 1 2 3 25 25 H 1.07998 * 126.58135 * 0.06621 * 3 2 1 26 26 H 1.08002 * 126.58276 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.47477 * 329.99952 * 6 5 4 28 28 H 1.09002 * 109.47412 * 210.00211 * 6 5 4 29 29 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 30 30 H 1.09003 * 109.47054 * 179.97438 * 12 10 9 31 31 H 1.08996 * 109.47245 * 299.99926 * 12 10 9 32 32 H 1.08995 * 109.47098 * 60.00065 * 12 10 9 33 33 H 0.96996 * 120.00441 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 -0.0006 5 6 3.5814 -0.7120 -0.0015 6 6 4.7706 -1.6376 -0.0030 7 6 5.1680 -1.9472 1.4174 8 8 4.5469 -1.4634 2.3399 9 7 6.2142 -2.7608 1.6624 10 6 6.5966 -3.0666 3.0431 11 1 6.4299 -2.1899 3.6689 12 6 5.7501 -4.2311 3.5609 13 6 8.0543 -3.4462 3.0883 14 1 8.6376 -3.4580 2.1794 15 6 8.6436 -3.7773 4.2900 16 7 7.9335 -3.7623 5.3968 17 14 10.4503 -4.2485 4.3458 18 1 11.2729 -3.0312 4.5618 19 1 10.6786 -5.2042 5.4592 20 1 10.8359 -4.8848 3.0606 21 8 2.2925 -1.0893 -0.0068 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5140 25 1 1.9664 2.1205 0.0010 26 1 4.5212 1.2435 -0.0004 27 1 5.6037 -1.1582 -0.5170 28 1 4.5104 -2.5628 -0.5173 29 1 6.7111 -3.1474 0.9245 30 1 6.0350 -4.4589 4.5881 31 1 4.6958 -3.9566 3.5283 32 1 5.9168 -5.1078 2.9351 33 1 8.3479 -3.9956 6.2422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533582418.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:42 Heat of formation + Delta-G solvation = -35.305350 kcal Electronic energy + Delta-G solvation = -16334.624232 eV Core-core repulsion = 13554.776314 eV Total energy + Delta-G solvation = -2779.847918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.39200 -38.79481 -34.83408 -32.99860 -32.80764 -32.32317 -30.12052 -28.44478 -25.27775 -24.86802 -21.70918 -21.25911 -19.98170 -19.40235 -17.31432 -16.44726 -16.01783 -15.41898 -15.14555 -14.71032 -14.33354 -13.74064 -13.24882 -13.12201 -12.83328 -12.63244 -12.60213 -12.30628 -12.03854 -11.65257 -11.45795 -11.06294 -10.96072 -10.72284 -10.30444 -10.23395 -9.66792 -9.11985 -9.04979 -8.55180 -8.05953 -7.91928 -6.12188 -4.21795 1.87845 2.78783 3.03291 3.24597 3.31159 3.32885 3.37966 4.15793 4.40628 4.70767 4.99728 5.19789 5.20359 5.24050 5.38107 5.45318 5.52295 5.58112 5.67621 5.99218 6.14417 6.32854 6.72404 6.83342 6.97485 7.15673 7.36488 7.45645 7.55983 7.69307 7.91519 8.15069 8.65010 8.77775 9.11656 9.45794 10.93837 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.057663 B = 0.004679 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.467255 B = 5983.010941 C = 6148.163441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.022 4.022 3 C -0.210 4.210 4 C -0.200 4.200 5 C 0.019 3.981 6 C -0.066 4.066 7 C 0.501 3.499 8 O -0.544 6.544 9 N -0.708 5.708 10 C 0.264 3.736 11 H 0.048 0.952 12 C -0.147 4.147 13 C -0.534 4.534 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.902 3.098 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 O -0.171 6.171 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.389 0.611 30 H 0.090 0.910 31 H 0.014 0.986 32 H 0.026 0.974 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.941 5.128 -12.349 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.229 4.229 4 C -0.220 4.220 5 C -0.032 4.032 6 C -0.106 4.106 7 C 0.285 3.715 8 O -0.423 6.423 9 N -0.357 5.357 10 C 0.162 3.838 11 H 0.066 0.934 12 C -0.206 4.206 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.730 3.270 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 O -0.068 6.068 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.162 0.838 26 H 0.163 0.837 27 H 0.136 0.864 28 H 0.123 0.877 29 H 0.222 0.778 30 H 0.109 0.891 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.455 5.126 -11.444 15.704 hybrid contribution 1.359 -0.256 -0.204 1.398 sum -8.096 4.870 -11.647 14.997 Atomic orbital electron populations 1.20249 0.85439 1.03944 1.03021 1.22324 0.93850 0.84299 1.06752 1.21478 0.92769 0.99094 1.09578 1.21455 0.98110 0.93762 1.08629 1.21566 0.82513 0.93983 1.05110 1.20221 0.93130 0.99575 0.97686 1.20188 0.81492 0.79992 0.89863 1.90697 1.53294 1.52387 1.45877 1.46494 1.30450 1.47123 1.11609 1.18752 0.93446 0.94987 0.76567 0.93376 1.22077 0.96292 0.98278 1.03938 1.21217 0.94024 1.47770 0.94242 0.92017 1.24897 0.98450 0.95025 0.95367 1.69905 1.35951 1.47638 0.98590 0.86438 0.84455 0.78356 0.77771 1.20557 1.21072 1.19830 1.83913 1.16357 1.35056 1.71470 0.90476 0.90660 0.89578 0.83802 0.83694 0.86375 0.87698 0.77820 0.89143 0.96670 0.95440 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.42 36.01 0.38 -0.29 16 2 C -0.02 -0.32 7.32 -35.62 -0.26 -0.58 16 3 C -0.21 -2.96 10.81 -39.70 -0.43 -3.39 16 4 C -0.20 -3.10 10.81 -39.70 -0.43 -3.53 16 5 C 0.02 0.31 5.81 -35.63 -0.21 0.10 16 6 C -0.07 -0.97 6.23 -29.03 -0.18 -1.15 16 7 C 0.50 10.16 7.78 -10.98 -0.09 10.08 16 8 O -0.54 -13.68 15.70 5.55 0.09 -13.59 16 9 N -0.71 -14.71 5.07 -54.94 -0.28 -14.99 16 10 C 0.26 6.80 2.56 -69.09 -0.18 6.63 16 11 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 12 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 13 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 16 N -0.88 -25.08 11.32 55.43 0.63 -24.45 16 17 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 O -0.17 -2.89 10.65 5.75 0.06 -2.83 16 22 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 26 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16 27 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.39 6.76 8.54 -40.82 -0.35 6.41 16 30 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 289.98 15.07 4.37 4.37 Total: -1.00 -33.05 289.98 -6.00 -39.06 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.40 Total: 5.15 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.45 Total: -8.31 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.35 Total: -39.44 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.15 Total: -16.42 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.05 -6.00 -39.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533582418.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.750 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds