Wall clock time and date at job start Sun Mar 29 2020 22:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34517 * 125.78512 * 2 1 4 4 C 1.41379 * 106.83827 * 180.02562 * 3 2 1 5 5 C 1.34511 * 106.84096 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.78788 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47355 * 90.00106 * 6 5 4 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 H 1.08995 * 109.47013 * 324.72129 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72116 * 10 9 7 13 13 C 1.50696 * 109.47047 * 204.72109 * 10 9 7 14 14 H 1.08003 * 120.00092 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00258 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00015 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00053 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47198 * 90.00383 * 17 15 13 19 19 H 1.48506 * 109.47350 * 210.00533 * 17 15 13 20 20 H 1.48502 * 109.47345 * 330.00247 * 17 15 13 21 21 O 1.34296 * 125.79473 * 180.35757 * 2 1 3 22 22 H 1.09000 * 109.47400 * 89.99355 * 1 2 3 23 23 H 1.09007 * 109.46668 * 209.99734 * 1 2 3 24 24 H 1.09004 * 109.46882 * 329.98808 * 1 2 3 25 25 H 1.07998 * 126.58135 * 0.06621 * 3 2 1 26 26 H 1.08002 * 126.58276 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.47477 * 329.99952 * 6 5 4 28 28 H 1.09002 * 109.47412 * 210.00211 * 6 5 4 29 29 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 30 30 H 1.09003 * 109.47054 * 179.97438 * 12 10 9 31 31 H 1.08996 * 109.47245 * 299.99926 * 12 10 9 32 32 H 1.08995 * 109.47098 * 60.00065 * 12 10 9 33 33 H 0.96996 * 120.00441 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 -0.0006 5 6 3.5814 -0.7120 -0.0015 6 6 4.7706 -1.6376 -0.0030 7 6 5.1680 -1.9472 1.4174 8 8 4.5469 -1.4634 2.3399 9 7 6.2142 -2.7608 1.6624 10 6 6.5966 -3.0666 3.0431 11 1 6.4299 -2.1899 3.6689 12 6 5.7501 -4.2311 3.5609 13 6 8.0543 -3.4462 3.0883 14 1 8.6376 -3.4580 2.1794 15 6 8.6436 -3.7773 4.2900 16 7 7.9335 -3.7623 5.3968 17 14 10.4503 -4.2485 4.3458 18 1 11.2729 -3.0312 4.5618 19 1 10.6786 -5.2042 5.4592 20 1 10.8359 -4.8848 3.0606 21 8 2.2925 -1.0893 -0.0068 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5140 25 1 1.9664 2.1205 0.0010 26 1 4.5212 1.2435 -0.0004 27 1 5.6037 -1.1582 -0.5170 28 1 4.5104 -2.5628 -0.5173 29 1 6.7111 -3.1474 0.9245 30 1 6.0350 -4.4589 4.5881 31 1 4.6958 -3.9566 3.5283 32 1 5.9168 -5.1078 2.9351 33 1 8.3479 -3.9956 6.2422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533582418.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:42 Heat of formation + Delta-G solvation = -57.795622 kcal Electronic energy + Delta-G solvation = -16335.599484 eV Core-core repulsion = 13554.776314 eV Total energy + Delta-G solvation = -2780.823169 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.52051 -40.49637 -36.75966 -34.38921 -34.11563 -33.83949 -31.51959 -30.02915 -27.35362 -26.02450 -23.23062 -22.67073 -21.37748 -20.96363 -19.04315 -17.75635 -17.58192 -16.98297 -16.80718 -16.20546 -15.86508 -15.08039 -14.73273 -14.48287 -14.17603 -13.82154 -13.72992 -13.66774 -13.52156 -13.10136 -12.93264 -12.83761 -12.72580 -12.48368 -12.26933 -12.11843 -11.12145 -10.89644 -10.75058 -10.59051 -9.77558 -9.18143 -8.17416 -6.35474 0.73318 1.46068 1.46633 1.57482 1.66323 1.77658 1.99426 2.38017 2.73139 3.13209 3.61756 3.99804 4.11895 4.15127 4.30822 4.45663 4.60428 4.72483 4.73586 4.86751 4.89590 4.93690 5.07999 5.09387 5.30192 5.42842 5.60408 5.67368 5.67766 5.89817 6.08683 6.24277 6.72749 6.94275 7.32372 7.55091 8.89124 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.057663 B = 0.004679 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.467255 B = 5983.010941 C = 6148.163441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.031 4.031 3 C -0.225 4.225 4 C -0.210 4.210 5 C -0.015 4.015 6 C -0.050 4.050 7 C 0.497 3.503 8 O -0.600 6.600 9 N -0.702 5.702 10 C 0.269 3.731 11 H -0.004 1.004 12 C -0.134 4.134 13 C -0.546 4.546 14 H 0.078 0.922 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.975 3.025 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.257 1.257 21 O -0.194 6.194 22 H 0.101 0.899 23 H 0.074 0.926 24 H 0.106 0.894 25 H 0.170 0.830 26 H 0.157 0.843 27 H 0.156 0.844 28 H 0.135 0.865 29 H 0.409 0.591 30 H 0.066 0.934 31 H 0.008 0.992 32 H 0.043 0.957 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.463 5.126 -14.393 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 C -0.244 4.244 4 C -0.229 4.229 5 C -0.064 4.064 6 C -0.089 4.089 7 C 0.284 3.716 8 O -0.481 6.481 9 N -0.351 5.351 10 C 0.166 3.834 11 H 0.013 0.987 12 C -0.193 4.193 13 C -0.584 4.584 14 H 0.096 0.904 15 C -0.188 4.188 16 N -0.558 5.558 17 Si 0.799 3.201 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.181 1.181 21 O -0.092 6.092 22 H 0.119 0.881 23 H 0.093 0.907 24 H 0.124 0.876 25 H 0.187 0.813 26 H 0.175 0.825 27 H 0.174 0.826 28 H 0.153 0.847 29 H 0.245 0.755 30 H 0.084 0.916 31 H 0.027 0.973 32 H 0.062 0.938 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.969 5.116 -13.547 17.033 hybrid contribution 1.118 -0.186 0.442 1.216 sum -7.851 4.930 -13.105 16.052 Atomic orbital electron populations 1.20474 0.82370 1.04902 1.04848 1.23269 0.95734 0.83795 1.05233 1.21877 0.92295 1.00489 1.09733 1.21838 0.99353 0.93914 1.07799 1.21915 0.82913 0.94767 1.06850 1.20218 0.93890 1.01283 0.93524 1.21170 0.80127 0.78400 0.91906 1.90670 1.54901 1.54205 1.48352 1.46212 1.31075 1.47541 1.10290 1.18345 0.93809 0.92767 0.78526 0.98656 1.21901 0.95698 0.98837 1.02836 1.21563 0.94404 1.47458 0.94988 0.90425 1.25846 1.03116 0.94855 0.94935 1.70064 1.38004 1.48523 0.99236 0.85303 0.78579 0.77916 0.78277 1.20370 1.21100 1.18111 1.83899 1.16892 1.36435 1.71980 0.88099 0.90707 0.87562 0.81255 0.82531 0.82593 0.84720 0.75483 0.91554 0.97326 0.93804 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.42 71.24 0.74 -0.44 16 2 C -0.03 -0.83 7.32 24.83 0.18 -0.65 16 3 C -0.23 -6.05 10.81 22.19 0.24 -5.81 16 4 C -0.21 -6.29 10.81 22.19 0.24 -6.05 16 5 C -0.01 -0.47 5.81 24.83 0.14 -0.32 16 6 C -0.05 -1.37 6.23 29.10 0.18 -1.19 16 7 C 0.50 20.05 7.78 87.66 0.68 20.73 16 8 O -0.60 -31.01 15.70 -3.04 -0.05 -31.06 16 9 N -0.70 -28.75 5.07 -446.11 -2.26 -31.01 16 10 C 0.27 14.13 2.56 44.24 0.11 14.24 16 11 H 0.00 -0.28 7.58 -2.39 -0.02 -0.30 16 12 C -0.13 -6.94 9.26 71.98 0.67 -6.27 16 13 C -0.55 -28.79 8.73 25.60 0.22 -28.56 16 14 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 15 C 0.01 0.66 5.30 84.66 0.45 1.11 16 16 N -0.92 -53.29 11.32 21.45 0.24 -53.05 16 17 Si 0.97 41.78 29.54 68.60 2.03 43.81 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 21 O -0.19 -6.45 10.65 -2.35 -0.03 -6.48 16 22 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 26 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 27 H 0.16 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.41 13.40 8.54 -92.71 -0.79 12.61 16 30 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -74.03 289.98 4.12 -69.91 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.32 Total: 21.09 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 3.86 Total: -13.21 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -2.02 Total: -84.06 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -0.07 Total: -37.54 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -74.03 4.12 -69.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533582418.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.112 kcal (2) G-P(sol) polarization free energy of solvation -74.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds