Wall clock time and date at job start Sun Mar 29 2020 21:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99899 * 2 1 4 4 H 1.48504 * 109.47135 * 239.99918 * 3 2 1 5 5 H 1.48496 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47335 * 120.00154 * 3 2 1 7 7 C 1.38816 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99837 * 200.57273 * 7 2 1 9 9 N 1.36936 * 120.00226 * 20.57080 * 7 2 1 10 10 C 1.46502 * 119.99834 * 38.05394 * 9 7 2 11 11 C 1.50701 * 109.47004 * 89.99886 * 10 9 7 12 12 C 1.34523 * 125.78655 * 89.71503 * 11 10 9 13 13 C 1.41380 * 106.83791 * 179.89352 * 12 11 10 14 14 C 1.34505 * 106.84451 * 0.37149 * 13 12 11 15 15 C 1.50704 * 125.79276 * 179.79184 * 14 13 12 16 16 O 1.42900 * 109.46684 * 90.00187 * 15 14 13 17 17 O 1.34298 * 125.79358 * 270.02919 * 11 10 9 18 18 C 1.46499 * 120.00206 * 218.05777 * 9 7 2 19 19 C 1.52999 * 117.49872 * 13.92021 * 18 9 7 20 20 C 1.52994 * 117.49782 * 305.29648 * 18 9 7 21 21 H 0.96994 * 120.00275 * 354.95985 * 1 2 3 22 22 H 1.09002 * 109.47119 * 330.00717 * 10 9 7 23 23 H 1.08994 * 109.47617 * 209.99940 * 10 9 7 24 24 H 1.07997 * 126.57858 * 0.02562 * 12 11 10 25 25 H 1.08007 * 126.57552 * 180.12189 * 13 12 11 26 26 H 1.08995 * 109.47124 * 209.99951 * 15 14 13 27 27 H 1.08996 * 109.46870 * 330.00174 * 15 14 13 28 28 H 0.96706 * 113.99569 * 180.02562 * 16 15 14 29 29 H 1.09007 * 115.54886 * 159.62415 * 18 9 7 30 30 H 1.08994 * 117.49719 * 359.97438 * 19 18 9 31 31 H 1.09004 * 117.50024 * 145.01951 * 19 18 9 32 32 H 1.09000 * 117.50129 * 214.97592 * 20 18 9 33 33 H 1.08998 * 117.49888 * 0.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0387 -1.2321 0.3281 9 7 1.3912 -2.3501 -0.4177 10 6 0.4603 -2.3109 -1.5483 11 6 1.2159 -2.5523 -2.8297 12 6 1.4456 -3.7519 -3.3934 13 6 2.1832 -3.5143 -4.5759 14 6 2.3673 -2.1845 -4.6598 15 6 3.1075 -1.4647 -5.7576 16 8 2.1946 -1.1224 -6.8024 17 8 1.7793 -1.6069 -3.5994 18 6 1.6596 -3.6174 0.2665 19 6 2.3691 -3.5527 1.6205 20 6 3.1192 -4.0597 0.3872 21 1 -0.4850 0.8367 0.0738 22 1 -0.0210 -1.3338 -1.5890 23 1 -0.2974 -3.0842 -1.4222 24 1 1.1258 -4.7121 -3.0163 25 1 2.5351 -4.2582 -5.2754 26 1 3.5583 -0.5568 -5.3571 27 1 3.8881 -2.1132 -6.1552 28 1 2.6031 -0.6558 -7.5444 29 1 0.9078 -4.3946 0.1285 30 1 2.6365 -2.5673 2.0019 31 1 2.0842 -4.2873 2.3737 32 1 3.3278 -5.1280 0.3290 33 1 3.8798 -3.4077 -0.0422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534348845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:06 Heat of formation + Delta-G solvation = 15.690927 kcal Electronic energy + Delta-G solvation = -16989.236688 eV Core-core repulsion = 14211.600135 eV Total energy + Delta-G solvation = -2777.636554 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.76722 -37.08633 -36.68095 -33.67740 -32.30817 -31.33327 -29.63812 -26.83167 -24.47572 -22.90900 -21.37448 -20.95848 -19.94900 -19.46929 -17.50182 -16.74501 -15.94263 -15.46682 -14.97555 -14.53690 -14.35496 -13.93213 -13.86918 -12.84176 -12.67564 -12.18370 -12.07754 -11.86473 -11.47368 -11.09877 -10.84587 -10.83201 -10.60517 -10.28501 -10.09602 -10.03289 -9.70922 -9.36279 -9.17649 -8.51714 -7.66539 -6.60949 -5.93476 -3.49827 2.35072 3.24918 3.34266 3.38871 3.42518 3.60863 4.38812 4.67350 4.93482 5.14747 5.23089 5.28003 5.37991 5.50861 5.66169 5.84552 5.87617 6.09767 6.19343 6.32985 6.47535 6.49979 6.57952 6.64803 6.85730 6.96412 7.16039 7.16776 7.41552 7.61168 7.74680 8.02694 8.41654 9.02779 9.65529 10.20900 11.09176 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.009923 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.707463 B = 2820.984810 C = 3773.282883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.022 3.978 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.268 4.268 8 H 0.063 0.937 9 N -0.537 5.537 10 C 0.207 3.793 11 C 0.036 3.964 12 C -0.247 4.247 13 C -0.183 4.183 14 C -0.058 4.058 15 C 0.164 3.836 16 O -0.568 6.568 17 O -0.159 6.159 18 C 0.125 3.875 19 C -0.192 4.192 20 C -0.225 4.225 21 H 0.261 0.739 22 H 0.113 0.887 23 H 0.067 0.933 24 H 0.138 0.862 25 H 0.136 0.864 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.379 0.621 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 -4.697 -7.586 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.179 4.179 3 Si 0.732 3.268 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.397 4.397 8 H 0.081 0.919 9 N -0.252 5.252 10 C 0.080 3.920 11 C -0.019 4.019 12 C -0.267 4.267 13 C -0.202 4.202 14 C -0.108 4.108 15 C 0.087 3.913 16 O -0.374 6.374 17 O -0.054 6.054 18 C 0.017 3.983 19 C -0.231 4.231 20 C -0.265 4.265 21 H 0.071 0.929 22 H 0.131 0.869 23 H 0.085 0.915 24 H 0.156 0.844 25 H 0.154 0.846 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.226 0.774 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.655 -4.480 -7.164 9.206 hybrid contribution 1.110 0.778 -0.405 1.415 sum 4.765 -3.702 -7.569 9.680 Atomic orbital electron populations 1.69841 1.05667 1.26686 1.50388 1.25225 0.95138 0.98906 0.98655 0.86364 0.79272 0.82752 0.78437 1.20571 1.21329 1.20544 1.18885 0.94388 0.84775 1.41645 0.91938 1.43314 1.50625 1.02904 1.28358 1.19757 0.89410 1.04820 0.78038 1.24857 0.96658 0.86045 0.94314 1.21424 1.08446 0.98448 0.98414 1.21407 1.04116 0.94903 0.99787 1.21686 1.05563 0.92059 0.91478 1.20170 0.88946 0.97884 0.84328 1.86609 1.38599 1.79988 1.32162 1.84091 1.54513 1.37617 1.29159 1.21140 0.91698 0.90270 0.95234 1.23075 1.06466 1.02171 0.91389 1.23332 0.99785 0.99047 1.04371 0.92912 0.86943 0.91486 0.84439 0.84639 0.92150 0.91063 0.77406 0.89171 0.88222 0.90640 0.90840 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.88 11.45 55.49 0.64 -24.24 16 2 C 0.02 0.61 4.97 -17.43 -0.09 0.52 16 3 Si 0.90 21.70 29.60 -169.99 -5.03 16.67 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.27 -7.24 8.04 -15.06 -0.12 -7.36 16 8 H 0.06 1.71 7.23 -52.48 -0.38 1.33 16 9 N -0.54 -13.30 2.76 -167.02 -0.46 -13.76 16 10 C 0.21 4.90 5.86 -5.19 -0.03 4.87 16 11 C 0.04 0.82 6.90 -35.62 -0.25 0.57 16 12 C -0.25 -4.92 10.81 -39.70 -0.43 -5.35 16 13 C -0.18 -3.38 10.81 -39.71 -0.43 -3.81 16 14 C -0.06 -1.13 6.95 -35.63 -0.25 -1.38 16 15 C 0.16 2.40 7.58 36.01 0.27 2.67 16 16 O -0.57 -8.07 13.64 -35.23 -0.48 -8.56 16 17 O -0.16 -3.75 10.65 5.70 0.06 -3.69 16 18 C 0.13 2.68 6.61 -67.93 -0.45 2.23 16 19 C -0.19 -3.84 9.81 -26.73 -0.26 -4.11 16 20 C -0.22 -4.40 10.09 -26.73 -0.27 -4.67 16 21 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 22 H 0.11 3.00 5.52 -51.93 -0.29 2.71 16 23 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 24 H 0.14 2.43 8.06 -52.49 -0.42 2.00 16 25 H 0.14 2.07 8.06 -52.48 -0.42 1.64 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.38 3.02 9.12 45.56 0.42 3.44 16 29 H 0.09 1.74 8.10 -51.93 -0.42 1.32 16 30 H 0.10 2.21 6.95 -51.93 -0.36 1.84 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.79 8.01 -51.93 -0.42 1.37 16 LS Contribution 287.82 15.07 4.34 4.34 Total: -1.00 -31.36 287.82 -6.78 -38.13 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -3.54 Total: 6.90 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.30 Total: -15.79 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.17 Total: -38.00 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.42 Total: -12.24 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.36 -6.78 -38.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534348845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.824 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds