Wall clock time and date at job start Sun Mar 29 2020 21:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99899 * 2 1 4 4 H 1.48504 * 109.47135 * 239.99918 * 3 2 1 5 5 H 1.48496 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47335 * 120.00154 * 3 2 1 7 7 C 1.38816 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99837 * 200.57273 * 7 2 1 9 9 N 1.36936 * 120.00226 * 20.57080 * 7 2 1 10 10 C 1.46502 * 119.99834 * 38.05394 * 9 7 2 11 11 C 1.50701 * 109.47004 * 89.99886 * 10 9 7 12 12 C 1.34523 * 125.78655 * 89.71503 * 11 10 9 13 13 C 1.41380 * 106.83791 * 179.89352 * 12 11 10 14 14 C 1.34505 * 106.84451 * 0.37149 * 13 12 11 15 15 C 1.50704 * 125.79276 * 179.79184 * 14 13 12 16 16 O 1.42900 * 109.46684 * 90.00187 * 15 14 13 17 17 O 1.34298 * 125.79358 * 270.02919 * 11 10 9 18 18 C 1.46499 * 120.00206 * 218.05777 * 9 7 2 19 19 C 1.52999 * 117.49872 * 13.92021 * 18 9 7 20 20 C 1.52994 * 117.49782 * 305.29648 * 18 9 7 21 21 H 0.96994 * 120.00275 * 354.95985 * 1 2 3 22 22 H 1.09002 * 109.47119 * 330.00717 * 10 9 7 23 23 H 1.08994 * 109.47617 * 209.99940 * 10 9 7 24 24 H 1.07997 * 126.57858 * 0.02562 * 12 11 10 25 25 H 1.08007 * 126.57552 * 180.12189 * 13 12 11 26 26 H 1.08995 * 109.47124 * 209.99951 * 15 14 13 27 27 H 1.08996 * 109.46870 * 330.00174 * 15 14 13 28 28 H 0.96706 * 113.99569 * 180.02562 * 16 15 14 29 29 H 1.09007 * 115.54886 * 159.62415 * 18 9 7 30 30 H 1.08994 * 117.49719 * 359.97438 * 19 18 9 31 31 H 1.09004 * 117.50024 * 145.01951 * 19 18 9 32 32 H 1.09000 * 117.50129 * 214.97592 * 20 18 9 33 33 H 1.08998 * 117.49888 * 0.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0387 -1.2321 0.3281 9 7 1.3912 -2.3501 -0.4177 10 6 0.4603 -2.3109 -1.5483 11 6 1.2159 -2.5523 -2.8297 12 6 1.4456 -3.7519 -3.3934 13 6 2.1832 -3.5143 -4.5759 14 6 2.3673 -2.1845 -4.6598 15 6 3.1075 -1.4647 -5.7576 16 8 2.1946 -1.1224 -6.8024 17 8 1.7793 -1.6069 -3.5994 18 6 1.6596 -3.6174 0.2665 19 6 2.3691 -3.5527 1.6205 20 6 3.1192 -4.0597 0.3872 21 1 -0.4850 0.8367 0.0738 22 1 -0.0210 -1.3338 -1.5890 23 1 -0.2974 -3.0842 -1.4222 24 1 1.1258 -4.7121 -3.0163 25 1 2.5351 -4.2582 -5.2754 26 1 3.5583 -0.5568 -5.3571 27 1 3.8881 -2.1132 -6.1552 28 1 2.6031 -0.6558 -7.5444 29 1 0.9078 -4.3946 0.1285 30 1 2.6365 -2.5673 2.0019 31 1 2.0842 -4.2873 2.3737 32 1 3.3278 -5.1280 0.3290 33 1 3.8798 -3.4077 -0.0422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534348845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:06 Heat of formation + Delta-G solvation = -5.654529 kcal Electronic energy + Delta-G solvation = -16990.162297 eV Core-core repulsion = 14211.600135 eV Total energy + Delta-G solvation = -2778.562162 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.34327 -38.79800 -37.78642 -35.48174 -33.91639 -33.12720 -31.23198 -28.46328 -26.26104 -24.49713 -22.95762 -22.52144 -21.71765 -21.03732 -18.67177 -18.50799 -17.60338 -17.14151 -16.68246 -16.15826 -15.82273 -15.54990 -15.39803 -14.62220 -13.98530 -13.79597 -13.66186 -13.55899 -13.04616 -12.81740 -12.74900 -12.64404 -12.20070 -12.13296 -11.93192 -11.49622 -11.11632 -10.98298 -10.70164 -10.50729 -9.22707 -8.54111 -7.95140 -5.55662 0.83003 1.37879 1.42988 1.48041 1.75480 2.17176 2.42018 3.11068 3.40894 3.51519 3.58431 3.99210 4.16846 4.23067 4.28610 4.35114 4.41765 4.47911 4.53859 4.66647 4.94070 4.97023 5.03521 5.10965 5.27938 5.34123 5.44581 5.54444 5.62381 5.79801 6.35370 6.49882 6.86655 7.03932 7.72031 8.22934 9.02914 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.009923 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.707463 B = 2820.984810 C = 3773.282883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.024 4.024 3 Si 0.953 3.047 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.269 4.269 8 H 0.050 0.950 9 N -0.554 5.554 10 C 0.212 3.788 11 C -0.004 4.004 12 C -0.232 4.232 13 C -0.184 4.184 14 C -0.072 4.072 15 C 0.165 3.835 16 O -0.588 6.588 17 O -0.199 6.199 18 C 0.101 3.899 19 C -0.189 4.189 20 C -0.205 4.205 21 H 0.257 0.743 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.161 0.839 25 H 0.173 0.827 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.405 0.595 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.417 -6.345 -8.669 12.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.222 4.222 3 Si 0.781 3.219 4 H -0.212 1.212 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.399 4.399 8 H 0.068 0.932 9 N -0.270 5.270 10 C 0.085 3.915 11 C -0.058 4.058 12 C -0.252 4.252 13 C -0.203 4.203 14 C -0.122 4.122 15 C 0.088 3.912 16 O -0.398 6.398 17 O -0.095 6.095 18 C -0.006 4.006 19 C -0.227 4.227 20 C -0.245 4.245 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.178 0.822 25 H 0.191 0.809 26 H 0.079 0.921 27 H 0.131 0.869 28 H 0.257 0.743 29 H 0.132 0.868 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.846 -6.141 -8.258 11.375 hybrid contribution 0.782 1.224 -0.168 1.463 sum 5.628 -4.917 -8.427 11.263 Atomic orbital electron populations 1.69953 1.06619 1.26828 1.51933 1.25820 0.95820 1.01368 0.99230 0.85565 0.78226 0.79836 0.78270 1.21200 1.21127 1.19550 1.18943 0.93950 0.86159 1.40885 0.93198 1.43449 1.50698 1.03442 1.29417 1.19499 0.89736 1.03351 0.78918 1.24586 0.99072 0.87097 0.95014 1.21746 1.06978 0.98213 0.98264 1.21840 1.03450 0.95275 0.99725 1.22795 1.04669 0.93380 0.91347 1.20369 0.88810 0.98550 0.83462 1.86523 1.39578 1.80655 1.33087 1.84038 1.55657 1.39081 1.30755 1.21459 0.93405 0.89657 0.96106 1.23074 1.06122 1.01702 0.91839 1.23264 0.97708 1.00446 1.03127 0.93332 0.90591 0.89876 0.82175 0.80908 0.92098 0.86944 0.74278 0.86811 0.91098 0.87417 0.87360 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.99 11.45 21.65 0.25 -52.75 16 2 C -0.02 -1.34 4.97 84.86 0.42 -0.92 16 3 Si 0.95 45.70 29.60 68.60 2.03 47.73 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.27 -14.96 8.04 84.03 0.68 -14.28 16 8 H 0.05 2.83 7.23 -2.91 -0.02 2.81 16 9 N -0.55 -27.80 2.76 -682.34 -1.89 -29.69 16 10 C 0.21 10.28 5.86 85.63 0.50 10.78 16 11 C 0.00 -0.19 6.90 24.84 0.17 -0.02 16 12 C -0.23 -8.82 10.81 22.19 0.24 -8.58 16 13 C -0.18 -6.31 10.81 22.19 0.24 -6.07 16 14 C -0.07 -2.73 6.95 24.83 0.17 -2.56 16 15 C 0.17 4.43 7.58 71.24 0.54 4.97 16 16 O -0.59 -15.34 13.64 -148.98 -2.03 -17.37 16 17 O -0.20 -9.49 10.65 -2.50 -0.03 -9.52 16 18 C 0.10 4.22 6.61 44.99 0.30 4.52 16 19 C -0.19 -7.31 9.81 30.59 0.30 -7.01 16 20 C -0.21 -7.64 10.09 30.59 0.31 -7.33 16 21 H 0.26 14.48 8.32 -92.71 -0.77 13.71 16 22 H 0.08 4.26 5.52 -2.39 -0.01 4.24 16 23 H 0.08 3.59 8.04 -2.39 -0.02 3.57 16 24 H 0.16 5.19 8.06 -2.91 -0.02 5.17 16 25 H 0.17 4.50 8.06 -2.91 -0.02 4.47 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.41 5.34 9.12 -74.05 -0.68 4.67 16 29 H 0.11 4.14 8.10 -2.38 -0.02 4.12 16 30 H 0.07 3.16 6.95 -2.39 -0.02 3.14 16 31 H 0.11 3.44 8.14 -2.38 -0.02 3.42 16 32 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.06 2.52 8.01 -2.39 -0.02 2.50 16 Total: -1.00 -69.55 287.82 2.64 -66.91 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.44 Total: 21.18 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 3.87 Total: -26.50 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -1.64 Total: -82.43 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -2.06 Total: -26.89 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -69.55 2.64 -66.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534348845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.256 kcal (2) G-P(sol) polarization free energy of solvation -69.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds