Wall clock time and date at job start Sun Mar 29 2020 21:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81408 * 102.99939 * 2 1 4 4 C 1.50699 * 109.47181 * 180.02562 * 3 2 1 5 5 C 1.38306 * 119.96204 * 270.27552 * 4 3 2 6 6 C 1.38265 * 120.14784 * 180.27606 * 5 4 3 7 7 C 1.38133 * 120.07407 * 359.44555 * 6 5 4 8 8 C 1.38886 * 119.92263 * 0.28038 * 7 6 5 9 9 N 1.39676 * 120.07159 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.50696 * 109.47149 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00130 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99882 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99764 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99971 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47243 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47208 * 119.99431 * 15 13 11 18 18 H 1.48499 * 109.47320 * 239.99615 * 15 13 11 19 19 C 1.38089 * 119.96065 * 89.99881 * 4 3 2 20 20 H 1.09004 * 109.47229 * 59.99817 * 1 2 3 21 21 H 1.09001 * 109.46984 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47091 * 299.99603 * 1 2 3 23 23 H 1.08996 * 109.46998 * 59.99808 * 3 2 1 24 24 H 1.08999 * 109.46786 * 300.00363 * 3 2 1 25 25 H 1.08001 * 119.92853 * 0.02562 * 5 4 3 26 26 H 1.08002 * 119.96572 * 179.72711 * 6 5 4 27 27 H 1.07999 * 120.03792 * 180.25490 * 7 6 5 28 28 H 0.97003 * 119.99650 * 180.02562 * 9 8 7 29 29 H 1.08998 * 109.47324 * 300.00914 * 10 9 8 30 30 H 1.09000 * 109.46859 * 60.00373 * 10 9 8 31 31 H 0.96999 * 119.99505 * 180.02562 * 14 13 11 32 32 H 1.07998 * 120.03755 * 0.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7194 1.9375 -0.0006 5 6 4.4069 2.0095 1.1973 6 6 5.7801 2.1710 1.2012 7 6 6.4713 2.2496 0.0078 8 6 5.7846 2.1719 -1.1969 9 7 6.4803 2.2515 -2.4054 10 6 7.9358 2.4177 -2.4033 11 6 8.4369 2.4757 -3.8233 12 1 7.7409 2.3963 -4.6452 13 6 9.7842 2.6291 -4.0732 14 7 10.6318 2.7253 -3.0722 15 14 10.4055 2.7004 -5.8333 16 1 9.2593 2.5696 -6.7685 17 1 11.0883 3.9986 -6.0651 18 1 11.3627 1.5891 -6.0658 19 6 4.4041 2.0153 -1.1973 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8031 2.2372 0.8899 24 1 1.8030 2.2371 -0.8900 25 1 3.8695 1.9434 2.1318 26 1 6.3135 2.2313 2.1384 27 1 7.5443 2.3716 0.0116 28 1 5.9995 2.1975 -3.2462 29 1 8.1951 3.3428 -1.8886 30 1 8.3969 1.5744 -1.8891 31 1 11.5796 2.8336 -3.2480 32 1 3.8671 1.9549 -2.1323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564862334.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:15 Heat of formation + Delta-G solvation = 11.057318 kcal Electronic energy + Delta-G solvation = -13743.004033 eV Core-core repulsion = 11407.919422 eV Total energy + Delta-G solvation = -2335.084611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.95025 -35.25419 -32.78484 -31.93267 -29.45774 -29.08614 -26.59960 -26.25849 -22.75313 -21.86470 -19.96138 -17.27647 -16.34015 -15.76360 -15.40950 -15.09023 -14.56682 -14.14243 -13.85452 -13.70038 -13.23818 -13.15802 -13.01045 -12.42984 -12.32530 -11.99850 -11.60521 -11.13433 -10.96832 -10.78971 -10.54645 -10.17025 -10.08105 -9.39401 -9.38479 -8.56140 -8.27304 -7.70283 -6.55929 -6.21856 -4.26897 1.26244 2.09496 2.28590 2.65956 3.21584 3.29107 3.32679 4.24324 4.44565 4.53189 4.88169 4.95722 4.98896 5.00962 5.15542 5.44726 5.50952 5.52695 5.70587 5.91638 6.10136 6.33668 6.45051 6.93420 6.96353 7.08813 7.13477 7.41968 7.43169 7.65448 7.94006 8.28725 8.66576 8.89876 9.39574 10.88850 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.042296 B = 0.004454 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.839676 B = 6285.232534 C = 6786.742361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.252 6.252 3 C -0.036 4.036 4 C -0.036 4.036 5 C -0.184 4.184 6 C -0.071 4.071 7 C -0.195 4.195 8 C 0.233 3.767 9 N -0.729 5.729 10 C 0.250 3.750 11 C -0.539 4.539 12 H 0.063 0.937 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.904 3.096 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.195 4.195 20 H 0.074 0.926 21 H 0.098 0.902 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.391 0.609 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.265 0.735 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.012 -1.784 6.678 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.024 6.024 3 C -0.184 4.184 4 C -0.038 4.038 5 C -0.207 4.207 6 C -0.090 4.090 7 C -0.219 4.219 8 C 0.123 3.877 9 N -0.351 5.351 10 C 0.129 3.871 11 C -0.577 4.577 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.527 5.527 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.221 4.221 20 H 0.093 0.907 21 H 0.117 0.883 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.143 0.857 28 H 0.224 0.776 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.942 -2.630 6.685 16.579 hybrid contribution -0.544 1.047 -1.239 1.710 sum -15.486 -1.583 5.446 16.492 Atomic orbital electron populations 1.23399 0.95585 1.06209 1.04587 1.87347 1.05580 1.11527 1.97987 1.22278 0.96985 0.94102 1.04993 1.18693 0.91615 0.99881 0.93571 1.20496 0.94332 1.09441 0.96383 1.20778 0.93768 0.97301 0.97171 1.20812 1.00420 1.09577 0.91081 1.17995 0.90671 0.91365 0.87671 1.45511 1.09146 1.76765 1.03702 1.19118 0.73920 0.96313 0.97744 1.21239 0.92893 1.51844 0.91713 0.91929 1.24935 0.96536 0.94685 0.97855 1.69956 1.03085 1.48785 1.30838 0.86355 0.78887 0.77774 0.83895 1.19641 1.20768 1.20752 1.20320 0.92554 1.11910 0.97287 0.90717 0.88328 0.90770 0.89589 0.89631 0.87194 0.86663 0.85697 0.77559 0.96149 0.96128 0.92509 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 10.76 101.05 1.09 0.00 16 2 S -0.25 -3.20 22.36 -107.50 -2.40 -5.60 16 3 C -0.04 -0.44 6.07 36.01 0.22 -0.22 16 4 C -0.04 -0.54 5.14 -104.65 -0.54 -1.08 16 5 C -0.18 -2.80 9.70 -39.55 -0.38 -3.18 16 6 C -0.07 -1.16 10.04 -39.61 -0.40 -1.56 16 7 C -0.19 -3.73 9.31 -39.38 -0.37 -4.10 16 8 C 0.23 4.57 6.65 -83.79 -0.56 4.01 16 9 N -0.73 -15.67 5.73 -59.81 -0.34 -16.02 16 10 C 0.25 6.38 4.67 -5.20 -0.02 6.36 16 11 C -0.54 -14.64 9.28 -34.44 -0.32 -14.96 16 12 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 15 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 C -0.20 -3.34 9.55 -39.38 -0.38 -3.72 16 20 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 21 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 22 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 23 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 24 H 0.09 0.95 8.08 -51.92 -0.42 0.53 16 25 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 26 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.13 2.53 6.73 -52.49 -0.35 2.18 16 28 H 0.39 7.85 8.33 -40.82 -0.34 7.51 16 29 H 0.02 0.56 7.95 -51.93 -0.41 0.15 16 30 H 0.02 0.57 7.95 -51.93 -0.41 0.16 16 31 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 290.48 15.07 4.38 4.38 Total: -1.00 -28.88 290.48 -8.84 -37.72 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.43 Total: 5.28 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.75 Total: -16.80 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.39 Total: -40.86 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.40 Total: -5.60 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.88 -8.84 -37.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564862334.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.777 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds