Wall clock time and date at job start Sun Mar 29 2020 21:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81408 * 102.99939 * 2 1 4 4 C 1.50699 * 109.47181 * 180.02562 * 3 2 1 5 5 C 1.38306 * 119.96204 * 270.27552 * 4 3 2 6 6 C 1.38265 * 120.14784 * 180.27606 * 5 4 3 7 7 C 1.38133 * 120.07407 * 359.44555 * 6 5 4 8 8 C 1.38886 * 119.92263 * 0.28038 * 7 6 5 9 9 N 1.39676 * 120.07159 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.50696 * 109.47149 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00130 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99882 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99764 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99971 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47243 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47208 * 119.99431 * 15 13 11 18 18 H 1.48499 * 109.47320 * 239.99615 * 15 13 11 19 19 C 1.38089 * 119.96065 * 89.99881 * 4 3 2 20 20 H 1.09004 * 109.47229 * 59.99817 * 1 2 3 21 21 H 1.09001 * 109.46984 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47091 * 299.99603 * 1 2 3 23 23 H 1.08996 * 109.46998 * 59.99808 * 3 2 1 24 24 H 1.08999 * 109.46786 * 300.00363 * 3 2 1 25 25 H 1.08001 * 119.92853 * 0.02562 * 5 4 3 26 26 H 1.08002 * 119.96572 * 179.72711 * 6 5 4 27 27 H 1.07999 * 120.03792 * 180.25490 * 7 6 5 28 28 H 0.97003 * 119.99650 * 180.02562 * 9 8 7 29 29 H 1.08998 * 109.47324 * 300.00914 * 10 9 8 30 30 H 1.09000 * 109.46859 * 60.00373 * 10 9 8 31 31 H 0.96999 * 119.99505 * 180.02562 * 14 13 11 32 32 H 1.07998 * 120.03755 * 0.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7194 1.9375 -0.0006 5 6 4.4069 2.0095 1.1973 6 6 5.7801 2.1710 1.2012 7 6 6.4713 2.2496 0.0078 8 6 5.7846 2.1719 -1.1969 9 7 6.4803 2.2515 -2.4054 10 6 7.9358 2.4177 -2.4033 11 6 8.4369 2.4757 -3.8233 12 1 7.7409 2.3963 -4.6452 13 6 9.7842 2.6291 -4.0732 14 7 10.6318 2.7253 -3.0722 15 14 10.4055 2.7004 -5.8333 16 1 9.2593 2.5696 -6.7685 17 1 11.0883 3.9986 -6.0651 18 1 11.3627 1.5891 -6.0658 19 6 4.4041 2.0153 -1.1973 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8031 2.2372 0.8899 24 1 1.8030 2.2371 -0.8900 25 1 3.8695 1.9434 2.1318 26 1 6.3135 2.2313 2.1384 27 1 7.5443 2.3716 0.0116 28 1 5.9995 2.1975 -3.2462 29 1 8.1951 3.3428 -1.8886 30 1 8.3969 1.5744 -1.8891 31 1 11.5796 2.8336 -3.2480 32 1 3.8671 1.9549 -2.1323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564862334.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:14 Heat of formation + Delta-G solvation = -5.283745 kcal Electronic energy + Delta-G solvation = -13743.712634 eV Core-core repulsion = 11407.919422 eV Total energy + Delta-G solvation = -2335.793213 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.34143 -36.91025 -34.72532 -33.24790 -31.07719 -29.79573 -28.14558 -27.74530 -24.65766 -23.24468 -21.41779 -19.10863 -17.70335 -17.10237 -16.94898 -16.65387 -16.08849 -15.23658 -15.00626 -14.91062 -14.75538 -14.35976 -14.26838 -14.05371 -13.52352 -13.33259 -13.04826 -12.87205 -12.73122 -12.36469 -12.07795 -11.78296 -11.42042 -11.14382 -10.90000 -10.54386 -9.58975 -8.65388 -8.32225 -8.15043 -6.46160 0.14910 0.77914 1.18937 1.40110 1.40541 1.53957 1.76232 2.33143 2.88439 3.02298 3.09419 3.74780 3.97821 4.24462 4.38266 4.39537 4.40870 4.56722 4.59426 4.74071 4.86671 4.92946 5.04237 5.19424 5.28033 5.51005 5.52939 5.66910 5.75754 5.86164 6.11715 6.47438 6.74373 7.14445 7.27992 8.79932 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.042296 B = 0.004454 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.839676 B = 6285.232534 C = 6786.742361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.314 6.314 3 C -0.026 4.026 4 C -0.033 4.033 5 C -0.174 4.174 6 C -0.071 4.071 7 C -0.222 4.222 8 C 0.204 3.796 9 N -0.736 5.736 10 C 0.273 3.727 11 C -0.558 4.558 12 H 0.070 0.930 13 C 0.008 3.992 14 N -0.926 5.926 15 Si 0.979 3.021 16 H -0.261 1.261 17 H -0.276 1.276 18 H -0.277 1.277 19 C -0.194 4.194 20 H 0.085 0.915 21 H 0.109 0.891 22 H 0.090 0.910 23 H 0.110 0.890 24 H 0.098 0.902 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.098 0.902 28 H 0.396 0.604 29 H -0.009 1.009 30 H -0.011 1.011 31 H 0.269 0.731 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.509 -1.840 6.691 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.087 6.087 3 C -0.173 4.173 4 C -0.035 4.035 5 C -0.196 4.196 6 C -0.089 4.089 7 C -0.246 4.246 8 C 0.097 3.903 9 N -0.362 5.362 10 C 0.150 3.850 11 C -0.596 4.596 12 H 0.088 0.912 13 C -0.191 4.191 14 N -0.565 5.565 15 Si 0.803 3.197 16 H -0.185 1.185 17 H -0.201 1.201 18 H -0.202 1.202 19 C -0.219 4.219 20 H 0.104 0.896 21 H 0.127 0.873 22 H 0.109 0.891 23 H 0.128 0.872 24 H 0.117 0.883 25 H 0.160 0.840 26 H 0.158 0.842 27 H 0.116 0.884 28 H 0.231 0.769 29 H 0.009 0.991 30 H 0.007 0.993 31 H 0.078 0.922 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.485 -2.687 6.730 18.927 hybrid contribution 0.066 1.024 -1.086 1.494 sum -17.419 -1.663 5.645 18.387 Atomic orbital electron populations 1.23445 0.91127 1.07373 1.06002 1.87563 1.10533 1.12357 1.98199 1.22246 0.94437 0.93740 1.06893 1.19076 0.93677 0.97932 0.92776 1.20915 0.93828 1.07049 0.97774 1.21066 0.94631 0.96271 0.96947 1.20831 0.99509 1.11697 0.92564 1.18269 0.91891 0.93154 0.86954 1.45138 1.07413 1.78839 1.04830 1.18547 0.76389 0.93503 0.96574 1.21618 0.93582 1.51933 0.92451 0.91165 1.25940 0.96692 0.93947 1.02569 1.70087 1.03554 1.49507 1.33357 0.85192 0.78406 0.77927 0.78204 1.18497 1.20105 1.20204 1.20496 0.91352 1.11255 0.98830 0.89557 0.87288 0.89081 0.87151 0.88337 0.84001 0.84196 0.88379 0.76948 0.99100 0.99313 0.92177 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.76 113.37 1.22 -0.25 16 2 S -0.31 -7.16 22.36 -56.49 -1.26 -8.42 16 3 C -0.03 -0.55 6.07 71.24 0.43 -0.12 16 4 C -0.03 -0.93 5.14 -19.88 -0.10 -1.03 16 5 C -0.17 -4.84 9.70 22.29 0.22 -4.62 16 6 C -0.07 -2.24 10.04 22.25 0.22 -2.02 16 7 C -0.22 -8.88 9.31 22.40 0.21 -8.67 16 8 C 0.20 8.26 6.65 38.21 0.25 8.52 16 9 N -0.74 -33.23 5.73 -343.15 -1.96 -35.19 16 10 C 0.27 14.82 4.67 85.63 0.40 15.22 16 11 C -0.56 -31.26 9.28 25.60 0.24 -31.02 16 12 H 0.07 3.73 7.60 -2.91 -0.02 3.71 16 13 C 0.01 0.47 5.46 84.66 0.46 0.93 16 14 N -0.93 -55.02 13.29 21.45 0.28 -54.74 16 15 Si 0.98 43.18 29.54 68.60 2.03 45.21 16 16 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 19 C -0.19 -6.53 9.55 22.40 0.21 -6.31 16 20 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.11 1.80 8.09 -2.39 -0.02 1.78 16 24 H 0.10 1.83 8.08 -2.39 -0.02 1.81 16 25 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 26 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 27 H 0.10 4.36 6.73 -2.91 -0.02 4.34 16 28 H 0.40 16.47 8.33 -92.71 -0.77 15.69 16 29 H -0.01 -0.52 7.95 -2.39 -0.02 -0.54 16 30 H -0.01 -0.65 7.95 -2.39 -0.02 -0.67 16 31 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -64.43 290.48 3.18 -61.25 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.33 Total: 21.27 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 3.76 Total: -29.38 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -1.68 Total: -89.93 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -1.26 Total: -8.42 kcal Total: -64.43 3.18 -61.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564862334.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.971 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds