Wall clock time and date at job start Sun Mar 29 2020 21:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81402 * 103.00018 * 2 1 4 4 C 1.50700 * 109.47072 * 179.97438 * 3 2 1 5 5 C 1.38292 * 119.92221 * 89.99944 * 4 3 2 6 6 C 1.38103 * 120.06781 * 180.02562 * 5 4 3 7 7 C 1.38907 * 119.93251 * 359.97438 * 6 5 4 8 8 N 1.39668 * 120.07688 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00181 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47289 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99399 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00144 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99733 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47181 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46716 * 120.00463 * 14 12 10 17 17 H 1.48500 * 109.46999 * 240.00161 * 14 12 10 18 18 C 1.38907 * 119.84667 * 0.25939 * 7 6 5 19 19 C 1.38108 * 119.92754 * 359.48722 * 18 7 6 20 20 H 1.08995 * 109.46760 * 59.99941 * 1 2 3 21 21 H 1.09003 * 109.46781 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46946 * 299.99777 * 1 2 3 23 23 H 1.08997 * 109.47033 * 60.00011 * 3 2 1 24 24 H 1.08997 * 109.46836 * 300.00029 * 3 2 1 25 25 H 1.07994 * 119.96476 * 0.04575 * 5 4 3 26 26 H 1.08003 * 120.03201 * 179.97438 * 6 5 4 27 27 H 0.97001 * 120.00568 * 0.02562 * 8 7 6 28 28 H 1.09001 * 109.47060 * 300.00571 * 9 8 7 29 29 H 1.09004 * 109.47073 * 60.00060 * 9 8 7 30 30 H 0.96997 * 119.99752 * 179.97438 * 13 12 10 31 31 H 1.08004 * 120.03686 * 179.72396 * 18 7 6 32 32 H 1.07998 * 119.96672 * 180.25929 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9374 0.0006 5 6 4.4055 2.0150 -1.1977 6 6 5.7778 2.1701 -1.2006 7 6 6.4690 2.2486 0.0017 8 7 7.8569 2.4050 0.0023 9 6 8.5843 2.4871 1.2713 10 6 10.0567 2.6535 0.9965 11 1 10.4147 2.6945 -0.0215 12 6 10.9465 2.7546 2.0449 13 7 10.5104 2.7052 3.2847 14 14 12.7717 2.9602 1.7043 15 1 13.0016 2.9857 0.2375 16 1 13.2462 4.2342 2.3016 17 1 13.5179 1.8245 2.3031 18 6 5.7774 2.1655 1.2035 19 6 4.4044 2.0156 1.1994 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8032 2.2371 0.8900 24 1 1.8032 2.2371 -0.8900 25 1 3.8674 1.9545 -2.1321 26 1 6.3130 2.2302 -2.1368 27 1 8.3393 2.4592 -0.8375 28 1 8.2228 3.3420 1.8427 29 1 8.4220 1.5733 1.8430 30 1 11.1364 2.7759 4.0222 31 1 6.3122 2.2217 2.1401 32 1 3.8656 1.9551 2.1334 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571315955.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:17 Heat of formation + Delta-G solvation = 10.193660 kcal Electronic energy + Delta-G solvation = -13681.340837 eV Core-core repulsion = 11346.218775 eV Total energy + Delta-G solvation = -2335.122062 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.95451 -35.37571 -32.87616 -30.95343 -30.39701 -29.04875 -27.40350 -24.99166 -23.11340 -21.65710 -20.28743 -17.33938 -16.35008 -15.79809 -15.36211 -14.93543 -14.53424 -14.06008 -13.86371 -13.55127 -13.26359 -13.16180 -12.93332 -12.72086 -12.28837 -12.01488 -11.66519 -11.15859 -10.97032 -10.83101 -10.49093 -10.15192 -10.07269 -9.40534 -9.28537 -8.55884 -8.43788 -7.65242 -6.55693 -6.23371 -4.28751 1.41305 1.95878 2.32655 2.74942 3.20612 3.28176 3.31639 4.23125 4.43278 4.53830 4.98271 4.98774 5.01533 5.07313 5.14011 5.45505 5.48961 5.54827 5.58688 5.91221 6.16307 6.30356 6.50609 6.84989 6.93602 7.07125 7.11022 7.39266 7.41653 7.63445 7.91739 8.24443 8.62936 8.86775 9.37828 10.87266 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.065788 B = 0.004008 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.510305 B = 6985.076918 C = 7209.507550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.269 6.269 3 C -0.018 4.018 4 C -0.170 4.170 5 C -0.048 4.048 6 C -0.218 4.218 7 C 0.242 3.758 8 N -0.726 5.726 9 C 0.249 3.751 10 C -0.540 4.540 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.888 5.888 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.281 1.281 18 C -0.203 4.203 19 C -0.046 4.046 20 H 0.072 0.928 21 H 0.096 0.904 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.392 0.608 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.266 0.734 31 H 0.126 0.874 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.894 -1.622 -6.236 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.041 6.041 3 C -0.165 4.165 4 C -0.175 4.175 5 C -0.069 4.069 6 C -0.242 4.242 7 C 0.131 3.869 8 N -0.347 5.347 9 C 0.128 3.872 10 C -0.578 4.578 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.526 5.526 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.227 4.227 19 C -0.067 4.067 20 H 0.091 0.909 21 H 0.115 0.885 22 H 0.092 0.908 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.225 0.775 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.060 -2.493 -5.822 16.337 hybrid contribution 0.355 1.126 -0.334 1.227 sum -14.705 -1.367 -6.157 16.000 Atomic orbital electron populations 1.23365 0.95826 1.06023 1.04432 1.87372 1.05458 1.13322 1.97967 1.22085 0.96976 0.93019 1.04433 1.18655 0.92104 1.12793 0.93925 1.20537 0.93400 0.96374 0.96557 1.20485 0.94296 1.13170 0.96237 1.18134 0.85055 0.90206 0.93553 1.45593 1.02493 1.75907 1.10711 1.19152 0.90845 0.96654 0.80594 1.21230 0.91230 1.51966 0.93366 0.91917 1.24936 0.99574 0.94687 0.94804 1.69954 1.35204 1.49103 0.98342 0.86349 0.84176 0.77859 0.78502 1.19635 1.20759 1.20733 1.20723 0.94002 1.10627 0.97319 1.20653 0.93549 0.95827 0.96645 0.90908 0.88537 0.90841 0.90115 0.90205 0.86945 0.86721 0.77474 0.96043 0.96013 0.92477 0.85581 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 10.76 101.05 1.09 -0.01 16 2 S -0.27 -3.43 22.36 -107.50 -2.40 -5.83 16 3 C -0.02 -0.22 6.07 36.01 0.22 0.00 16 4 C -0.17 -2.55 5.14 -104.59 -0.54 -3.09 16 5 C -0.05 -0.72 9.69 -39.61 -0.38 -1.11 16 6 C -0.22 -3.65 9.90 -39.38 -0.39 -4.04 16 7 C 0.24 4.69 6.65 -83.79 -0.56 4.13 16 8 N -0.73 -15.40 5.73 -59.80 -0.34 -15.74 16 9 C 0.25 6.30 4.67 -5.19 -0.02 6.27 16 10 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 11 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 14 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.20 -3.87 9.31 -39.38 -0.37 -4.23 16 19 C -0.05 -0.75 9.69 -39.61 -0.38 -1.13 16 20 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 22 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 23 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 24 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 25 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 26 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 27 H 0.39 7.71 8.33 -40.82 -0.34 7.37 16 28 H 0.02 0.58 7.96 -51.93 -0.41 0.17 16 29 H 0.02 0.60 7.94 -51.93 -0.41 0.18 16 30 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 31 H 0.13 2.55 6.73 -52.48 -0.35 2.19 16 32 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 290.48 15.07 4.38 4.38 Total: -1.00 -28.63 290.48 -8.84 -37.47 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -4.43 Total: 5.13 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -1.75 Total: -16.46 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.39 Total: -40.47 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.40 Total: -5.83 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.63 -8.84 -37.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571315955.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.659 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds