Wall clock time and date at job start Sun Mar 29 2020 21:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81402 * 103.00018 * 2 1 4 4 C 1.50700 * 109.47072 * 179.97438 * 3 2 1 5 5 C 1.38292 * 119.92221 * 89.99944 * 4 3 2 6 6 C 1.38103 * 120.06781 * 180.02562 * 5 4 3 7 7 C 1.38907 * 119.93251 * 359.97438 * 6 5 4 8 8 N 1.39668 * 120.07688 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00181 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47289 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99399 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00144 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99733 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47181 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46716 * 120.00463 * 14 12 10 17 17 H 1.48500 * 109.46999 * 240.00161 * 14 12 10 18 18 C 1.38907 * 119.84667 * 0.25939 * 7 6 5 19 19 C 1.38108 * 119.92754 * 359.48722 * 18 7 6 20 20 H 1.08995 * 109.46760 * 59.99941 * 1 2 3 21 21 H 1.09003 * 109.46781 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46946 * 299.99777 * 1 2 3 23 23 H 1.08997 * 109.47033 * 60.00011 * 3 2 1 24 24 H 1.08997 * 109.46836 * 300.00029 * 3 2 1 25 25 H 1.07994 * 119.96476 * 0.04575 * 5 4 3 26 26 H 1.08003 * 120.03201 * 179.97438 * 6 5 4 27 27 H 0.97001 * 120.00568 * 0.02562 * 8 7 6 28 28 H 1.09001 * 109.47060 * 300.00571 * 9 8 7 29 29 H 1.09004 * 109.47073 * 60.00060 * 9 8 7 30 30 H 0.96997 * 119.99752 * 179.97438 * 13 12 10 31 31 H 1.08004 * 120.03686 * 179.72396 * 18 7 6 32 32 H 1.07998 * 119.96672 * 180.25929 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9374 0.0006 5 6 4.4055 2.0150 -1.1977 6 6 5.7778 2.1701 -1.2006 7 6 6.4690 2.2486 0.0017 8 7 7.8569 2.4050 0.0023 9 6 8.5843 2.4871 1.2713 10 6 10.0567 2.6535 0.9965 11 1 10.4147 2.6945 -0.0215 12 6 10.9465 2.7546 2.0449 13 7 10.5104 2.7052 3.2847 14 14 12.7717 2.9602 1.7043 15 1 13.0016 2.9857 0.2375 16 1 13.2462 4.2342 2.3016 17 1 13.5179 1.8245 2.3031 18 6 5.7774 2.1655 1.2035 19 6 4.4044 2.0156 1.1994 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8032 2.2371 0.8900 24 1 1.8032 2.2371 -0.8900 25 1 3.8674 1.9545 -2.1321 26 1 6.3130 2.2302 -2.1368 27 1 8.3393 2.4592 -0.8375 28 1 8.2228 3.3420 1.8427 29 1 8.4220 1.5733 1.8430 30 1 11.1364 2.7759 4.0222 31 1 6.3122 2.2217 2.1401 32 1 3.8656 1.9551 2.1334 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571315955.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:16 Heat of formation + Delta-G solvation = -5.919368 kcal Electronic energy + Delta-G solvation = -13682.039551 eV Core-core repulsion = 11346.218775 eV Total energy + Delta-G solvation = -2335.820775 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33376 -36.98823 -34.80366 -32.39904 -31.74209 -29.80052 -29.10363 -26.46457 -24.84961 -23.14578 -21.71896 -19.15147 -17.71158 -17.19213 -17.02231 -16.32579 -16.00406 -15.15935 -15.03495 -14.84145 -14.75768 -14.41773 -14.18823 -13.95933 -13.80177 -13.27777 -13.19639 -12.82246 -12.72987 -12.34306 -12.10331 -11.71328 -11.42229 -11.15253 -10.81857 -10.43569 -9.78192 -8.61639 -8.32463 -8.10383 -6.46585 0.32590 0.61065 1.24842 1.40186 1.40495 1.53966 1.82700 2.32923 2.88903 3.02140 3.09609 3.91165 3.94861 4.20200 4.28667 4.41017 4.42088 4.59325 4.63854 4.82422 4.84850 4.94127 5.07172 5.21422 5.27122 5.48144 5.54290 5.57007 5.77315 5.85412 6.11699 6.46362 6.72975 7.13808 7.27611 8.79650 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.065788 B = 0.004008 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.510305 B = 6985.076918 C = 7209.507550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.329 6.329 3 C -0.010 4.010 4 C -0.157 4.157 5 C -0.047 4.047 6 C -0.212 4.212 7 C 0.210 3.790 8 N -0.734 5.734 9 C 0.272 3.728 10 C -0.558 4.558 11 H 0.071 0.929 12 C 0.008 3.992 13 N -0.926 5.926 14 Si 0.979 3.021 15 H -0.260 1.260 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.227 4.227 19 C -0.051 4.051 20 H 0.088 0.912 21 H 0.106 0.894 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.147 0.853 26 H 0.134 0.866 27 H 0.398 0.602 28 H -0.009 1.009 29 H -0.011 1.011 30 H 0.269 0.731 31 H 0.098 0.902 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.469 -1.576 -8.045 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.102 6.102 3 C -0.156 4.156 4 C -0.161 4.161 5 C -0.067 4.067 6 C -0.235 4.235 7 C 0.103 3.897 8 N -0.359 5.359 9 C 0.149 3.851 10 C -0.596 4.596 11 H 0.089 0.911 12 C -0.192 4.192 13 N -0.565 5.565 14 Si 0.803 3.197 15 H -0.184 1.184 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.250 4.250 19 C -0.071 4.071 20 H 0.107 0.893 21 H 0.125 0.875 22 H 0.104 0.896 23 H 0.113 0.887 24 H 0.122 0.878 25 H 0.164 0.836 26 H 0.152 0.848 27 H 0.233 0.767 28 H 0.009 0.991 29 H 0.007 0.993 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.685 -2.448 -7.657 18.521 hybrid contribution 0.572 1.058 0.215 1.222 sum -16.113 -1.390 -7.442 17.804 Atomic orbital electron populations 1.23408 0.91399 1.07179 1.05853 1.87579 1.10359 1.14069 1.98182 1.22072 0.94575 0.92618 1.06380 1.19037 0.94028 1.09822 0.93189 1.20943 0.92778 0.94952 0.98041 1.20744 0.95168 1.11828 0.95781 1.18396 0.84288 0.92220 0.94838 1.45190 1.03309 1.78256 1.09170 1.18565 0.90912 0.93721 0.81946 1.21617 0.92085 1.51920 0.93946 0.91066 1.25947 1.04742 0.94056 0.94453 1.70088 1.37070 1.49935 0.99430 0.85188 0.77759 0.77889 0.78876 1.18420 1.20159 1.20233 1.20712 0.95420 1.12479 0.96404 1.20847 0.92415 0.95517 0.98347 0.89266 0.87528 0.89628 0.88692 0.87802 0.83573 0.84806 0.76746 0.99089 0.99287 0.92181 0.88424 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.76 113.37 1.22 -0.27 16 2 S -0.33 -7.55 22.36 -56.49 -1.26 -8.81 16 3 C -0.01 -0.20 6.07 71.24 0.43 0.23 16 4 C -0.16 -4.36 5.14 -19.84 -0.10 -4.46 16 5 C -0.05 -1.29 9.69 22.25 0.22 -1.07 16 6 C -0.21 -6.84 9.90 22.40 0.22 -6.62 16 7 C 0.21 8.39 6.65 38.21 0.25 8.64 16 8 N -0.73 -32.59 5.73 -343.12 -1.96 -34.55 16 9 C 0.27 14.65 4.67 85.63 0.40 15.05 16 10 C -0.56 -31.04 9.28 25.60 0.24 -30.80 16 11 H 0.07 3.74 7.60 -2.91 -0.02 3.72 16 12 C 0.01 0.44 5.46 84.65 0.46 0.90 16 13 N -0.93 -54.94 13.29 21.45 0.28 -54.66 16 14 Si 0.98 43.01 29.54 68.60 2.03 45.04 16 15 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 C -0.23 -9.08 9.31 22.40 0.21 -8.87 16 19 C -0.05 -1.65 9.69 22.25 0.22 -1.43 16 20 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.09 1.73 8.08 -2.39 -0.02 1.71 16 24 H 0.10 1.70 8.08 -2.39 -0.02 1.69 16 25 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 26 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 27 H 0.40 16.10 8.33 -92.71 -0.77 15.33 16 28 H -0.01 -0.51 7.96 -2.39 -0.02 -0.53 16 29 H -0.01 -0.63 7.94 -2.38 -0.02 -0.65 16 30 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.10 4.37 6.73 -2.91 -0.02 4.35 16 32 H 0.13 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -64.02 290.48 3.18 -60.84 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.33 Total: 20.85 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 3.76 Total: -28.71 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -1.68 Total: -89.21 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.26 Total: -8.81 kcal Total: -64.02 3.18 -60.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571315955.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.919 kcal (2) G-P(sol) polarization free energy of solvation -64.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds