Wall clock time and date at job start Sun Mar 29 2020 21:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46995 * 2 1 4 4 C 1.52996 * 109.47168 * 119.99889 * 2 1 3 5 5 C 1.50702 * 109.47255 * 185.00363 * 4 2 1 6 6 H 1.08001 * 119.99984 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99789 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00154 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47392 * 89.99819 * 9 7 5 11 11 H 1.48503 * 109.47377 * 210.00033 * 9 7 5 12 12 H 1.48498 * 109.47282 * 330.00230 * 9 7 5 13 13 N 1.46898 * 109.47403 * 239.99900 * 2 1 3 14 14 C 1.47970 * 110.99999 * 62.42716 * 13 2 1 15 15 C 1.53931 * 86.17993 * 222.41962 * 14 13 2 16 16 C 1.53000 * 113.73009 * 138.08108 * 15 14 13 17 17 F 1.39896 * 109.47154 * 59.99989 * 16 15 14 18 18 F 1.39906 * 109.46791 * 179.97438 * 16 15 14 19 19 F 1.39900 * 109.47026 * 299.99473 * 16 15 14 20 20 C 1.47961 * 111.00086 * 323.07281 * 13 2 1 21 21 H 1.09003 * 109.47215 * 190.15590 * 1 2 3 22 22 H 1.09000 * 109.47046 * 310.15890 * 1 2 3 23 23 H 1.09000 * 109.47241 * 70.15807 * 1 2 3 24 24 H 1.08999 * 109.47383 * 304.99723 * 4 2 1 25 25 H 1.09001 * 109.47458 * 64.99959 * 4 2 1 26 26 H 0.96999 * 119.99652 * 180.02562 * 8 7 5 27 27 H 1.09000 * 113.75160 * 108.10049 * 14 13 2 28 28 H 1.08996 * 113.85788 * 336.75253 * 14 13 2 29 29 H 1.09000 * 113.73319 * 269.35845 * 15 14 13 30 30 H 1.08998 * 113.75918 * 23.25977 * 20 13 2 31 31 H 1.09000 * 113.75457 * 251.90001 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5418 -0.6148 1.3128 6 1 4.0789 -0.0860 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5412 -1.1009 2.4130 9 14 3.3015 -2.1086 3.6954 10 1 3.1699 -3.5385 3.3169 11 1 4.0453 -2.0019 4.9763 12 1 1.9508 -1.5129 3.8563 13 7 2.0197 -0.6925 -1.1994 14 6 1.5936 0.0114 -2.4292 15 6 1.2875 -1.3854 -2.9992 16 6 -0.0220 -1.4553 -3.7874 17 9 0.0361 -0.5686 -4.8679 18 9 -0.2110 -2.7574 -4.2629 19 9 -1.0881 -1.1039 -2.9525 20 6 1.1554 -1.8452 -1.5362 21 1 -0.3634 -1.0116 0.1812 22 1 -0.3633 0.6628 0.7854 23 1 -0.3634 0.3488 -0.9666 24 1 1.6054 -0.2617 2.1370 25 1 1.7516 -1.7715 1.2056 26 1 6.0256 -1.5083 3.1480 27 1 2.4046 0.5274 -2.9431 28 1 0.7096 0.6350 -2.2965 29 1 2.1272 -1.8374 -3.5271 30 1 0.1429 -1.7654 -1.1405 31 1 1.6162 -2.8126 -1.3366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576124572.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:15 Heat of formation + Delta-G solvation = -136.788973 kcal Electronic energy + Delta-G solvation = -17696.594536 eV Core-core repulsion = 14370.489218 eV Total energy + Delta-G solvation = -3326.105318 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.09576 -48.61239 -48.56381 -41.34398 -35.85620 -34.03808 -30.34181 -29.35069 -27.30491 -25.95192 -24.31104 -21.80210 -20.24070 -19.41696 -19.31390 -18.79200 -18.78127 -16.67053 -16.45021 -16.11030 -15.53720 -15.40274 -15.17507 -15.04398 -14.83320 -14.75832 -14.59316 -14.43243 -14.03505 -13.64114 -13.31261 -12.93981 -12.54807 -12.36354 -12.24595 -12.11971 -11.71567 -11.55039 -11.37964 -11.14855 -10.68684 -9.51004 -8.18600 -6.18324 1.37507 1.39012 1.49773 1.73488 2.41477 2.67456 2.69146 2.95801 3.15293 3.26814 3.66016 3.92490 4.02396 4.07974 4.24715 4.34086 4.52514 4.62672 4.72655 4.86625 4.92305 5.04514 5.12611 5.26370 5.43311 5.67264 5.74402 6.17762 6.46747 6.89887 7.42802 8.98786 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.043476 B = 0.006340 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.879034 B = 4415.420414 C = 4482.151255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.062 3.938 3 H 0.066 0.934 4 C 0.001 3.999 5 C -0.496 4.496 6 H 0.035 0.965 7 C -0.003 4.003 8 N -0.958 5.958 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.246 1.246 13 N -0.478 5.478 14 C 0.011 3.989 15 C -0.157 4.157 16 C 0.465 3.535 17 F -0.183 7.183 18 F -0.186 7.186 19 F -0.184 7.184 20 C 0.000 4.000 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.023 0.977 25 H 0.015 0.985 26 H 0.261 0.739 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.103 0.897 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.538 -0.606 -11.461 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.047 4.047 3 H 0.085 0.915 4 C -0.037 4.037 5 C -0.534 4.534 6 H 0.054 0.946 7 C -0.198 4.198 8 N -0.600 5.600 9 Si 0.769 3.231 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.170 1.170 13 N -0.200 5.200 14 C -0.117 4.117 15 C -0.177 4.177 16 C 0.410 3.590 17 F -0.165 7.165 18 F -0.167 7.167 19 F -0.165 7.165 20 C -0.128 4.128 21 H 0.084 0.916 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.041 0.959 25 H 0.033 0.967 26 H 0.070 0.930 27 H 0.123 0.877 28 H 0.108 0.892 29 H 0.168 0.832 30 H 0.121 0.879 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.733 -0.731 -11.215 17.745 hybrid contribution -0.680 -0.248 0.520 0.891 sum -14.412 -0.979 -10.695 17.974 Atomic orbital electron populations 1.22507 0.95603 1.02697 1.02933 1.21957 0.93136 0.97932 0.91640 0.91541 1.19507 0.94526 0.95700 0.93950 1.21331 0.92088 1.32757 1.07250 0.94645 1.25964 0.95513 0.97564 1.00772 1.70086 1.08481 1.47859 1.33598 0.85746 0.79746 0.79344 0.78276 1.19696 1.21513 1.16967 1.68920 1.44862 1.05122 1.01052 1.24063 1.01878 0.93937 0.91853 1.24415 0.94557 1.01958 0.96774 1.20449 0.87166 0.73229 0.78116 1.93177 1.96674 1.69098 1.57524 1.93180 1.96086 1.38241 1.89203 1.93148 1.59939 1.91910 1.71553 1.24274 0.99570 0.98074 0.90870 0.91626 0.91108 0.91083 0.95920 0.96670 0.93002 0.87718 0.89153 0.83218 0.87894 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.93 7.81 71.98 0.56 -4.37 16 2 C 0.06 2.27 2.35 44.91 0.11 2.38 16 3 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 4 C 0.00 0.03 3.61 29.85 0.11 0.14 16 5 C -0.50 -28.38 9.39 25.60 0.24 -28.14 16 6 H 0.04 2.27 7.99 -2.91 -0.02 2.24 16 7 C 0.00 -0.18 5.47 84.65 0.46 0.28 16 8 N -0.96 -61.05 13.96 21.45 0.30 -60.75 16 9 Si 0.94 44.58 27.47 68.60 1.88 46.46 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 13 N -0.48 -16.52 5.90 -882.47 -5.21 -21.73 16 14 C 0.01 0.29 7.10 86.40 0.61 0.90 16 15 C -0.16 -3.64 3.99 -10.15 -0.04 -3.68 16 16 C 0.46 10.14 3.03 71.98 0.22 10.36 16 17 F -0.18 -4.03 17.18 44.97 0.77 -3.25 16 18 F -0.19 -4.21 17.32 44.97 0.78 -3.43 16 19 F -0.18 -4.15 15.33 44.97 0.69 -3.46 16 20 C 0.00 0.01 6.81 86.40 0.59 0.60 16 21 H 0.06 1.74 6.40 -2.39 -0.02 1.72 16 22 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 1.68 5.52 -2.39 -0.01 1.67 16 24 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 25 H 0.01 0.67 7.35 -2.39 -0.02 0.66 16 26 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 27 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.09 2.09 5.77 -2.39 -0.01 2.08 16 29 H 0.15 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.10 2.66 3.97 -2.39 -0.01 2.65 16 31 H 0.09 2.71 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -65.75 260.68 3.16 -62.59 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.09 Total: 5.10 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 2.86 Total: -21.53 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -4.91 Total: -82.48 kcal Atomic # 9 Polarization: -12.38 SS G_CDS: 2.24 Total: -10.14 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Total: -65.75 3.16 -62.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576124572.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.200 kcal (2) G-P(sol) polarization free energy of solvation -65.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds