Wall clock time and date at job start Sun Mar 29 2020 21:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81404 * 109.46946 * 2 1 4 4 C 1.76192 * 102.99967 * 180.02562 * 3 2 1 5 5 C 1.39058 * 120.04517 * 359.72437 * 4 3 2 6 6 C 1.38111 * 120.06862 * 179.72063 * 5 4 3 7 7 C 1.38195 * 120.15604 * 0.55576 * 6 5 4 8 8 C 1.38964 * 120.08124 * 359.72106 * 7 6 5 9 9 N 1.39670 * 120.03562 * 180.02562 * 8 7 6 10 10 C 1.46504 * 119.99907 * 359.97438 * 9 8 7 11 11 C 1.50693 * 109.47252 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00255 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00132 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00161 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99851 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47294 * 90.00399 * 15 13 11 17 17 H 1.48503 * 109.47210 * 210.00107 * 15 13 11 18 18 H 1.48498 * 109.47349 * 330.00044 * 15 13 11 19 19 C 1.38774 * 119.93415 * 359.97438 * 8 7 6 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99756 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99928 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00064 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00244 * 2 1 3 25 25 H 1.08004 * 119.96449 * 0.02562 * 5 4 3 26 26 H 1.08002 * 119.92157 * 180.27331 * 6 5 4 27 27 H 1.07998 * 119.96054 * 179.74246 * 7 6 5 28 28 H 0.96998 * 120.00627 * 179.97438 * 9 8 7 29 29 H 1.08993 * 109.47118 * 300.00680 * 10 9 8 30 30 H 1.09009 * 109.46579 * 60.00181 * 10 9 8 31 31 H 0.96994 * 119.99971 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.08264 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8853 1.5118 -0.0008 5 6 4.4415 0.2373 0.0046 6 6 5.8137 0.0811 -0.0018 7 6 6.6387 1.1898 -0.0020 8 6 6.0897 2.4664 -0.0016 9 7 6.9244 3.5863 -0.0023 10 6 8.3794 3.4154 -0.0030 11 6 9.0440 4.7679 -0.0043 12 1 8.4428 5.6651 -0.0042 13 6 10.4197 4.8600 -0.0057 14 7 10.9998 6.0404 -0.0063 15 14 11.4597 3.3083 -0.0065 16 1 11.7340 2.8970 -1.4068 17 1 12.7432 3.5722 0.6923 18 1 10.7288 2.2221 0.6943 19 6 4.7114 2.6275 -0.0015 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.7997 -0.6314 0.0088 26 1 6.2431 -0.9099 -0.0021 27 1 7.7113 1.0640 -0.0028 28 1 6.5407 4.4772 -0.0024 29 1 8.6807 2.8629 0.8869 30 1 8.6798 2.8624 -0.8931 31 1 11.9675 6.1051 -0.0069 32 1 4.2822 3.6186 -0.0016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576578067.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:43 Heat of formation + Delta-G solvation = -3.382474 kcal Electronic energy + Delta-G solvation = -13754.692183 eV Core-core repulsion = 11418.981415 eV Total energy + Delta-G solvation = -2335.710767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21189 -36.78055 -34.66133 -33.74870 -31.92327 -31.18807 -28.47688 -24.96637 -24.50201 -22.97103 -22.31598 -19.52462 -18.24599 -17.30170 -17.16420 -16.36993 -15.93264 -15.73579 -15.42284 -15.25836 -14.92022 -14.43905 -14.38001 -13.82278 -13.30334 -13.04600 -12.90320 -12.75746 -12.40309 -12.35456 -11.91186 -11.88036 -11.61594 -11.28965 -11.03624 -10.84553 -10.42170 -8.50344 -8.40253 -8.18745 -6.48784 0.36044 0.59045 0.69161 1.34658 1.35914 1.47258 1.53486 2.28278 2.75371 2.88243 2.95870 4.00863 4.03486 4.06002 4.24101 4.34725 4.54000 4.59979 4.63134 4.73858 4.89507 4.92853 4.96608 5.05741 5.24968 5.27001 5.33543 5.44401 5.60221 5.79916 6.05588 6.49071 6.61771 6.96038 7.19098 8.75693 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.061119 B = 0.004565 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.011653 B = 6132.714360 C = 6564.976617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 S -0.154 6.154 4 C -0.040 4.040 5 C -0.204 4.204 6 C -0.047 4.047 7 C -0.227 4.227 8 C 0.223 3.777 9 N -0.733 5.733 10 C 0.239 3.761 11 C -0.553 4.553 12 H 0.042 0.958 13 C 0.017 3.983 14 N -0.939 5.939 15 Si 0.950 3.050 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.245 1.245 19 C -0.204 4.204 20 H 0.097 0.903 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.145 0.855 26 H 0.152 0.848 27 H 0.116 0.884 28 H 0.396 0.604 29 H 0.018 0.982 30 H 0.017 0.983 31 H 0.272 0.728 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.200 -16.615 0.028 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.249 4.249 3 S 0.088 5.912 4 C -0.153 4.153 5 C -0.229 4.229 6 C -0.067 4.067 7 C -0.252 4.252 8 C 0.115 3.885 9 N -0.358 5.358 10 C 0.116 3.884 11 C -0.591 4.591 12 H 0.060 0.940 13 C -0.182 4.182 14 N -0.578 5.578 15 Si 0.772 3.228 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.168 1.168 19 C -0.232 4.232 20 H 0.115 0.885 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.115 0.885 24 H 0.115 0.885 25 H 0.162 0.838 26 H 0.169 0.831 27 H 0.134 0.866 28 H 0.230 0.770 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.583 -15.574 0.031 23.488 hybrid contribution 1.620 -0.358 -0.019 1.659 sum -15.963 -15.932 0.012 22.553 Atomic orbital electron populations 1.21548 0.90536 1.04179 1.03084 1.23711 1.01164 0.93523 1.06496 1.85516 0.97538 1.15467 1.92665 1.21483 0.96654 0.95997 1.01213 1.21100 0.95819 0.95308 1.10695 1.21059 0.92749 0.98471 0.94456 1.20890 1.00334 0.91421 1.12514 1.18092 0.89884 0.88244 0.92272 1.45004 1.05406 1.05817 1.79537 1.19146 0.77950 0.95829 0.95514 1.21343 0.92626 0.92309 1.52828 0.93989 1.25817 0.99066 1.00030 0.93334 1.70025 1.11134 1.25834 1.50816 0.85676 0.78123 0.79388 0.79611 1.18695 1.20264 1.16836 1.20134 0.90861 0.98256 1.13992 0.88493 0.91804 0.91798 0.88519 0.88523 0.83781 0.83054 0.86558 0.76996 0.96383 0.96537 0.91893 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.92 71.98 0.71 -0.80 16 2 C -0.10 -1.53 5.05 71.98 0.36 -1.17 16 3 S -0.15 -3.72 21.92 -56.49 -1.24 -4.96 16 4 C -0.04 -1.18 6.11 22.61 0.14 -1.05 16 5 C -0.20 -5.24 9.36 22.44 0.21 -5.03 16 6 C -0.05 -1.28 10.03 22.23 0.22 -1.06 16 7 C -0.23 -7.79 9.31 22.43 0.21 -7.58 16 8 C 0.22 8.46 6.65 38.19 0.25 8.72 16 9 N -0.73 -31.35 5.72 -343.21 -1.96 -33.32 16 10 C 0.24 11.43 3.73 85.63 0.32 11.75 16 11 C -0.55 -31.47 9.83 25.60 0.25 -31.22 16 12 H 0.04 2.61 7.84 -2.91 -0.02 2.59 16 13 C 0.02 0.96 5.47 84.65 0.46 1.42 16 14 N -0.94 -57.43 13.96 21.45 0.30 -57.13 16 15 Si 0.95 42.57 27.47 68.60 1.88 44.45 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 18 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 19 C -0.20 -7.00 9.64 22.54 0.22 -6.78 16 20 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 21 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.10 1.32 7.74 -2.39 -0.02 1.30 16 24 H 0.10 1.32 7.76 -2.39 -0.02 1.30 16 25 H 0.14 2.74 5.87 -2.91 -0.02 2.73 16 26 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 27 H 0.12 4.07 6.72 -2.91 -0.02 4.05 16 28 H 0.40 16.72 8.33 -92.71 -0.77 15.95 16 29 H 0.02 0.87 7.01 -2.39 -0.02 0.86 16 30 H 0.02 0.79 7.37 -2.38 -0.02 0.77 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.12 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -64.60 282.41 2.63 -61.97 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.29 Total: 21.78 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 3.36 Total: -32.79 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -1.67 Total: -90.45 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.45 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.24 Total: -4.96 kcal Total: -64.60 2.63 -61.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576578067.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.587 kcal (2) G-P(sol) polarization free energy of solvation -64.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds