Wall clock time and date at job start Sun Mar 29 2020 21:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.47479 * 110.99896 * 74.02718 * 12 11 10 14 14 C 1.53504 * 87.93392 * 138.71012 * 13 12 11 15 15 C 1.52994 * 114.34475 * 220.32068 * 14 13 12 16 16 F 1.39898 * 109.47461 * 153.92445 * 15 14 13 17 17 F 1.39901 * 109.46986 * 273.92004 * 15 14 13 18 18 F 1.39898 * 109.47531 * 33.91841 * 15 14 13 19 19 C 1.47470 * 111.00419 * 170.00112 * 12 11 10 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 26 26 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 27 27 H 1.09005 * 113.48002 * 253.47716 * 13 12 11 28 28 H 1.09001 * 113.47456 * 23.93641 * 13 12 11 29 29 H 1.09003 * 114.17108 * 87.62033 * 14 13 12 30 30 H 1.08999 * 113.47873 * 336.06301 * 19 12 11 31 31 H 1.09004 * 113.47913 * 106.53613 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 3.0670 -6.2592 1.3238 14 6 2.9162 -7.7776 1.1558 15 6 2.4950 -8.5142 2.4289 16 9 1.8292 -9.6957 2.0855 17 9 3.6300 -8.8221 3.1866 18 9 1.6409 -7.6986 3.1788 19 6 1.7476 -7.3865 0.2402 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 0.8537 -5.0445 0.8914 26 1 0.8532 -5.0451 -0.8886 27 1 4.1046 -5.9263 1.3511 28 1 2.4712 -5.8513 2.1404 29 1 3.7486 -8.2542 0.6381 30 1 0.7997 -7.2795 0.7676 31 1 1.6670 -8.0091 -0.6509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581396919.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:20 Heat of formation + Delta-G solvation = -134.857260 kcal Electronic energy + Delta-G solvation = -16862.499736 eV Core-core repulsion = 13536.478183 eV Total energy + Delta-G solvation = -3326.021553 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.24783 -47.75491 -47.73131 -40.18523 -34.36001 -32.29086 -29.90247 -26.78502 -26.21905 -24.39887 -22.17858 -20.34662 -20.10371 -18.57321 -18.52604 -17.75996 -16.26358 -15.88732 -14.93321 -14.64673 -14.61020 -14.35581 -14.18113 -14.14846 -13.93795 -13.86090 -13.73591 -12.76672 -12.39170 -12.29366 -11.71883 -11.47806 -11.11882 -11.05639 -10.81020 -10.54445 -10.48971 -9.73439 -9.37291 -9.07859 -8.92998 -8.35611 -6.00758 -4.03057 2.56377 3.31968 3.38092 3.41551 3.46847 3.53270 3.82921 4.14765 4.45001 4.46594 4.75134 4.91677 5.11977 5.34173 5.35488 5.48495 5.54266 5.64525 5.78733 6.16667 6.30892 6.57596 6.72386 7.08639 7.13037 7.65831 7.79476 7.98900 8.41844 9.03898 9.61158 11.10709 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.052592 B = 0.004314 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.269421 B = 6489.377509 C = 6579.903051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.104 4.104 11 C 0.019 3.981 12 N -0.464 5.464 13 C 0.013 3.987 14 C -0.177 4.177 15 C 0.460 3.540 16 F -0.183 7.183 17 F -0.183 7.183 18 F -0.181 7.181 19 C 0.011 3.989 20 H 0.260 0.740 21 H 0.014 0.986 22 H 0.016 0.984 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.143 0.857 30 H 0.079 0.921 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 -17.733 3.429 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.109 4.109 12 N -0.186 5.186 13 C -0.116 4.116 14 C -0.197 4.197 15 C 0.406 3.594 16 F -0.165 7.165 17 F -0.165 7.165 18 F -0.162 7.162 19 C -0.118 4.118 20 H 0.070 0.930 21 H 0.033 0.967 22 H 0.035 0.965 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.161 0.839 30 H 0.097 0.903 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.721 -17.483 2.839 18.330 hybrid contribution -0.238 0.763 0.940 1.234 sum 4.483 -16.720 3.779 17.718 Atomic orbital electron populations 1.69964 1.06077 1.26605 1.50924 1.25026 0.94847 0.99283 0.95315 0.86588 0.79839 0.83425 0.78121 1.20638 1.21235 1.19873 1.21236 0.93048 0.91005 1.50506 0.92664 1.19080 0.93988 0.91371 0.97177 1.21588 0.99171 0.92491 1.00922 1.22901 0.94543 0.92150 1.01273 1.69062 1.21464 1.01704 1.26339 1.23859 1.03561 0.90169 0.94012 1.24271 1.03752 0.98451 0.93223 1.20406 0.74890 0.77641 0.86482 1.93179 1.81466 1.49665 1.92170 1.93184 1.51202 1.93453 1.78641 1.93182 1.71666 1.72558 1.78791 1.23802 0.94969 0.94109 0.98940 0.93007 0.96744 0.96537 0.92460 0.93456 0.94004 0.90430 0.88208 0.89530 0.83915 0.90279 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.12 5.26 -26.74 -0.14 -2.26 16 11 C 0.02 0.32 4.82 -3.83 -0.02 0.30 16 12 N -0.46 -6.48 6.41 -244.66 -1.57 -8.05 16 13 C 0.01 0.16 6.46 -7.56 -0.05 0.11 16 14 C -0.18 -1.78 4.14 -90.09 -0.37 -2.15 16 15 C 0.46 4.93 3.08 37.15 0.11 5.04 16 16 F -0.18 -1.99 17.19 2.25 0.04 -1.95 16 17 F -0.18 -2.03 17.32 2.25 0.04 -1.99 16 18 F -0.18 -2.19 15.73 2.25 0.04 -2.16 16 19 C 0.01 0.12 7.10 -7.56 -0.05 0.07 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.05 0.95 7.67 -51.93 -0.40 0.55 16 25 H 0.04 0.69 7.56 -51.93 -0.39 0.30 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.09 1.12 6.65 -51.93 -0.35 0.78 16 29 H 0.14 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.08 0.88 7.54 -51.93 -0.39 0.49 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 273.66 15.07 4.12 4.12 Total: -1.00 -29.92 273.66 -6.71 -36.63 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: -4.03 Total: -4.98 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.07 Total: -12.04 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: -0.83 Total: -34.32 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.11 Total: -6.10 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.92 -6.71 -36.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581396919.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.225 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds