Wall clock time and date at job start Sun Mar 29 2020 21:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.47479 * 110.99896 * 74.02718 * 12 11 10 14 14 C 1.53504 * 87.93392 * 138.71012 * 13 12 11 15 15 C 1.52994 * 114.34475 * 220.32068 * 14 13 12 16 16 F 1.39898 * 109.47461 * 153.92445 * 15 14 13 17 17 F 1.39901 * 109.46986 * 273.92004 * 15 14 13 18 18 F 1.39898 * 109.47531 * 33.91841 * 15 14 13 19 19 C 1.47470 * 111.00419 * 170.00112 * 12 11 10 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 26 26 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 27 27 H 1.09005 * 113.48002 * 253.47716 * 13 12 11 28 28 H 1.09001 * 113.47456 * 23.93641 * 13 12 11 29 29 H 1.09003 * 114.17108 * 87.62033 * 14 13 12 30 30 H 1.08999 * 113.47873 * 336.06301 * 19 12 11 31 31 H 1.09004 * 113.47913 * 106.53613 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 3.0670 -6.2592 1.3238 14 6 2.9162 -7.7776 1.1558 15 6 2.4950 -8.5142 2.4289 16 9 1.8292 -9.6957 2.0855 17 9 3.6300 -8.8221 3.1866 18 9 1.6409 -7.6986 3.1788 19 6 1.7476 -7.3865 0.2402 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 0.8537 -5.0445 0.8914 26 1 0.8532 -5.0451 -0.8886 27 1 4.1046 -5.9263 1.3511 28 1 2.4712 -5.8513 2.1404 29 1 3.7486 -8.2542 0.6381 30 1 0.7997 -7.2795 0.7676 31 1 1.6670 -8.0091 -0.6509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581396919.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:20 Heat of formation + Delta-G solvation = -154.504367 kcal Electronic energy + Delta-G solvation = -16863.351699 eV Core-core repulsion = 13536.478183 eV Total energy + Delta-G solvation = -3326.873516 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -51.12138 -48.65079 -48.58851 -41.20654 -36.18718 -34.13868 -31.33796 -28.34317 -27.16384 -25.89597 -23.65692 -21.86475 -21.21459 -19.45724 -19.40394 -18.82552 -18.28593 -16.94128 -16.52982 -16.10310 -15.55026 -15.51010 -15.26168 -15.14265 -15.03376 -14.76425 -14.74994 -14.29616 -13.86270 -13.71609 -13.35047 -12.86051 -12.66967 -12.47386 -12.36393 -12.13604 -11.87041 -11.48085 -11.36811 -11.06772 -10.55804 -10.04278 -8.20719 -6.31757 1.40400 1.41641 1.52793 1.69891 2.40771 2.57937 2.63150 2.96197 3.12727 3.22208 3.59512 3.80647 3.97916 4.01017 4.22426 4.34120 4.59592 4.64836 4.68099 4.79359 4.91215 5.03222 5.15910 5.30841 5.50988 5.71635 5.84601 5.88688 6.25079 6.85007 7.37710 8.91212 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.052592 B = 0.004314 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.269421 B = 6489.377509 C = 6579.903051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.089 4.089 11 C 0.031 3.969 12 N -0.473 5.473 13 C 0.004 3.996 14 C -0.156 4.156 15 C 0.463 3.537 16 F -0.182 7.182 17 F -0.184 7.184 18 F -0.191 7.191 19 C 0.011 3.989 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.007 1.007 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.168 0.832 30 H 0.078 0.922 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 -18.333 3.341 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.127 4.127 11 C -0.098 4.098 12 N -0.195 5.195 13 C -0.124 4.124 14 C -0.176 4.176 15 C 0.409 3.591 16 F -0.164 7.164 17 F -0.166 7.166 18 F -0.173 7.173 19 C -0.118 4.118 20 H 0.072 0.928 21 H 0.009 0.991 22 H 0.011 0.989 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.095 0.905 29 H 0.185 0.815 30 H 0.096 0.904 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.023 -18.103 2.752 19.276 hybrid contribution -0.661 0.902 0.984 1.489 sum 5.362 -17.201 3.736 18.401 Atomic orbital electron populations 1.70093 1.07808 1.27789 1.51710 1.25978 0.95766 1.03370 0.94684 0.85447 0.78667 0.78409 0.78539 1.19719 1.20716 1.18752 1.21689 0.93526 0.92404 1.50534 0.92273 1.18986 0.94422 0.93097 0.94837 1.21318 0.97974 0.92623 1.00783 1.22626 0.94485 0.91537 1.01123 1.69022 1.21198 1.01805 1.27487 1.23928 1.03654 0.92008 0.92853 1.24206 1.03883 0.96920 0.92585 1.20454 0.74638 0.77563 0.86480 1.93184 1.81465 1.49608 1.92124 1.93185 1.51205 1.93452 1.78734 1.93168 1.72049 1.72894 1.79147 1.23893 0.95167 0.92629 1.00126 0.92755 0.99064 0.98880 0.92798 0.93188 0.94210 0.90681 0.87433 0.90470 0.81457 0.90405 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.65 5.26 30.59 0.16 -3.49 16 11 C 0.03 1.01 4.82 86.30 0.42 1.43 16 12 N -0.47 -12.46 6.41 -927.98 -5.95 -18.41 16 13 C 0.00 0.10 6.46 83.57 0.54 0.64 16 14 C -0.16 -2.73 4.14 -10.45 -0.04 -2.78 16 15 C 0.46 8.98 3.08 71.98 0.22 9.20 16 16 F -0.18 -3.56 17.19 44.97 0.77 -2.79 16 17 F -0.18 -3.72 17.32 44.97 0.78 -2.94 16 18 F -0.19 -4.42 15.73 44.97 0.71 -3.71 16 19 C 0.01 0.21 7.10 83.57 0.59 0.80 16 20 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 21 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 22 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.05 1.99 7.67 -2.39 -0.02 1.98 16 25 H 0.04 1.32 7.56 -2.39 -0.02 1.30 16 26 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 27 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 28 H 0.08 1.93 6.65 -2.39 -0.02 1.92 16 29 H 0.17 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.08 1.60 7.54 -2.39 -0.02 1.59 16 31 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -63.77 273.66 2.47 -61.29 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: 1.12 Total: 0.22 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 2.73 Total: -23.28 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -5.67 Total: -75.21 kcal Atomic # 9 Polarization: -11.70 SS G_CDS: 2.26 Total: -9.44 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -63.77 2.47 -61.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581396919.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.210 kcal (2) G-P(sol) polarization free energy of solvation -63.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds