Wall clock time and date at job start Sun Mar 29 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34300 * 125.79042 * 2 1 4 4 C 1.34305 * 109.47485 * 180.23263 * 3 2 1 5 5 C 1.34511 * 108.42313 * 359.77077 * 4 3 2 6 6 C 1.34514 * 125.78777 * 179.82999 * 2 1 3 7 7 C 1.50703 * 126.58118 * 0.04195 * 6 2 1 8 8 N 1.46505 * 109.47064 * 79.70763 * 7 6 2 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99996 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00227 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46873 * 60.00019 * 17 15 13 19 19 H 1.48503 * 109.47134 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46938 * 300.00027 * 17 15 13 21 21 H 1.09003 * 109.47513 * 270.16402 * 1 2 3 22 22 H 1.09004 * 109.47098 * 30.17221 * 1 2 3 23 23 H 1.09001 * 109.47245 * 150.16554 * 1 2 3 24 24 H 1.08003 * 125.78822 * 179.75276 * 4 3 2 25 25 H 1.08001 * 126.57953 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47152 * 319.70846 * 7 6 2 27 27 H 1.09001 * 109.46980 * 199.70947 * 7 6 2 28 28 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 29 29 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 30 30 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 31 31 H 1.09001 * 109.47289 * 299.99918 * 12 11 9 32 32 H 1.09002 * 109.47153 * 60.00002 * 12 11 9 33 33 H 0.96993 * 120.00405 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5813 0.7121 -0.0051 5 6 3.6308 -0.6321 -0.0034 6 6 2.2936 -1.0912 0.0032 7 6 1.8371 -2.5274 0.0066 8 7 1.4548 -2.9215 -1.3517 9 6 1.0122 -4.1717 -1.5911 10 8 0.9299 -4.9704 -0.6821 11 6 0.6184 -4.5769 -2.9881 12 6 0.1551 -6.0351 -2.9848 13 6 -0.2381 -6.4405 -4.3819 14 1 -0.1653 -5.7291 -5.1913 15 6 -0.6918 -7.7193 -4.6268 16 7 -0.7810 -8.5854 -3.6411 17 14 -1.1799 -8.2216 -6.3586 18 1 -0.0119 -8.0758 -7.2639 19 1 -1.6295 -9.6369 -6.3553 20 1 -2.2857 -7.3515 -6.8332 21 1 -0.3634 0.0029 1.0277 22 1 -0.3633 0.8885 -0.5165 23 1 -0.3634 -0.8915 -0.5113 24 1 4.4336 1.3755 -0.0102 25 1 4.5212 -1.2434 -0.0068 26 1 0.9796 -2.6346 0.6710 27 1 2.6489 -3.1658 0.3553 28 1 1.5210 -2.2828 -2.0786 29 1 -0.1938 -3.9388 -3.3362 30 1 1.4755 -4.4692 -3.6529 31 1 0.9671 -6.6735 -2.6366 32 1 -0.7021 -6.1424 -2.3201 33 1 -1.1006 -9.4849 -3.8133 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589693184.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:13 Heat of formation + Delta-G solvation = -41.346828 kcal Electronic energy + Delta-G solvation = -15955.811814 eV Core-core repulsion = 13175.701918 eV Total energy + Delta-G solvation = -2780.109896 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.81547 -39.05494 -35.37230 -33.41842 -32.72790 -32.04817 -30.92382 -27.87517 -26.06127 -24.82170 -21.71871 -21.51218 -20.03225 -19.49614 -17.35585 -16.71552 -16.37997 -15.54771 -15.37588 -15.16857 -14.47716 -14.38146 -13.82833 -13.18780 -13.03935 -12.94830 -12.85461 -12.35811 -12.14583 -12.06621 -11.60250 -11.13838 -10.89111 -10.60588 -10.07724 -9.92411 -9.63701 -9.16827 -9.02186 -8.74891 -8.52556 -8.29492 -5.93832 -3.98285 1.48915 2.28304 2.79480 3.29631 3.35965 3.40486 3.42203 3.81645 4.49557 4.51275 4.64236 4.74742 5.08465 5.26463 5.39279 5.40892 5.45484 5.56798 5.62054 5.85953 5.90970 6.04954 6.26207 6.28178 6.30801 6.74881 6.92323 6.93392 7.76494 7.89226 7.94415 8.09856 8.41264 8.81927 9.10324 9.65079 11.17108 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.050749 B = 0.003989 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.599356 B = 7017.439729 C = 7118.912658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.007 3.993 3 O -0.177 6.177 4 C -0.049 4.049 5 C -0.195 4.195 6 C -0.197 4.197 7 C 0.191 3.809 8 N -0.740 5.740 9 C 0.509 3.491 10 O -0.536 6.536 11 C -0.130 4.130 12 C 0.037 3.963 13 C -0.528 4.528 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.203 0.797 25 H 0.149 0.851 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.397 0.603 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 19.899 6.505 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.044 4.044 3 O -0.073 6.073 4 C -0.116 4.116 5 C -0.214 4.214 6 C -0.199 4.199 7 C 0.067 3.933 8 N -0.395 5.395 9 C 0.297 3.703 10 O -0.411 6.411 11 C -0.170 4.170 12 C -0.001 4.001 13 C -0.566 4.566 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.101 0.899 22 H 0.096 0.904 23 H 0.112 0.888 24 H 0.219 0.781 25 H 0.167 0.833 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.231 0.769 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.142 19.387 7.229 21.583 hybrid contribution 0.129 -0.098 -1.240 1.250 sum 6.271 19.289 5.989 21.149 Atomic orbital electron populations 1.20396 0.84834 1.04490 1.03827 1.22398 0.94054 0.83760 1.04164 1.84023 1.16939 1.34838 1.71499 1.23948 0.84228 0.95962 1.07475 1.21768 0.97718 0.94751 1.07159 1.20288 0.93171 0.95669 1.10749 1.19413 0.99927 0.88643 0.85280 1.46313 1.69192 1.14247 1.09745 1.21580 0.75534 0.80412 0.92731 1.90670 1.52697 1.50906 1.46820 1.21864 1.01545 1.03021 0.90525 1.18896 0.97284 0.87098 0.96786 1.21196 1.44172 0.97133 0.94102 0.92671 1.25023 0.95751 0.96669 0.96907 1.69988 1.46474 1.05203 1.31210 0.86652 0.78891 0.77518 0.84861 1.20267 1.21291 1.20257 0.89856 0.90380 0.88824 0.78075 0.83284 0.91068 0.91008 0.76927 0.90278 0.90290 0.95829 0.95804 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.21 36.00 0.37 -0.29 16 2 C 0.01 0.08 7.32 -35.63 -0.26 -0.18 16 3 O -0.18 -1.88 10.65 5.71 0.06 -1.82 16 4 C -0.05 -0.43 12.09 29.41 0.36 -0.08 16 5 C -0.19 -1.98 10.87 -39.70 -0.43 -2.41 16 6 C -0.20 -2.26 5.53 -104.74 -0.58 -2.84 16 7 C 0.19 2.55 5.68 -5.19 -0.03 2.53 16 8 N -0.74 -10.77 5.55 -61.47 -0.34 -11.11 16 9 C 0.51 9.91 7.83 -10.99 -0.09 9.83 16 10 O -0.54 -12.78 15.98 5.56 0.09 -12.69 16 11 C -0.13 -2.66 5.64 -27.88 -0.16 -2.81 16 12 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 13 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 14 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.61 13.29 55.43 0.74 -26.88 16 17 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 24 H 0.20 1.00 8.06 -52.48 -0.42 0.57 16 25 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.40 4.83 8.46 -40.82 -0.35 4.49 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 293.87 15.07 4.43 4.43 Total: -1.00 -34.64 293.87 -5.92 -40.56 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.52 Total: -0.05 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.35 Total: -9.18 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.40 Total: -37.99 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.15 Total: -14.51 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.64 -5.92 -40.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589693184.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.788 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds