Wall clock time and date at job start Sun Mar 29 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34300 * 125.79042 * 2 1 4 4 C 1.34305 * 109.47485 * 180.23263 * 3 2 1 5 5 C 1.34511 * 108.42313 * 359.77077 * 4 3 2 6 6 C 1.34514 * 125.78777 * 179.82999 * 2 1 3 7 7 C 1.50703 * 126.58118 * 0.04195 * 6 2 1 8 8 N 1.46505 * 109.47064 * 79.70763 * 7 6 2 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99996 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00227 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46873 * 60.00019 * 17 15 13 19 19 H 1.48503 * 109.47134 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46938 * 300.00027 * 17 15 13 21 21 H 1.09003 * 109.47513 * 270.16402 * 1 2 3 22 22 H 1.09004 * 109.47098 * 30.17221 * 1 2 3 23 23 H 1.09001 * 109.47245 * 150.16554 * 1 2 3 24 24 H 1.08003 * 125.78822 * 179.75276 * 4 3 2 25 25 H 1.08001 * 126.57953 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47152 * 319.70846 * 7 6 2 27 27 H 1.09001 * 109.46980 * 199.70947 * 7 6 2 28 28 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 29 29 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 30 30 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 31 31 H 1.09001 * 109.47289 * 299.99918 * 12 11 9 32 32 H 1.09002 * 109.47153 * 60.00002 * 12 11 9 33 33 H 0.96993 * 120.00405 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5813 0.7121 -0.0051 5 6 3.6308 -0.6321 -0.0034 6 6 2.2936 -1.0912 0.0032 7 6 1.8371 -2.5274 0.0066 8 7 1.4548 -2.9215 -1.3517 9 6 1.0122 -4.1717 -1.5911 10 8 0.9299 -4.9704 -0.6821 11 6 0.6184 -4.5769 -2.9881 12 6 0.1551 -6.0351 -2.9848 13 6 -0.2381 -6.4405 -4.3819 14 1 -0.1653 -5.7291 -5.1913 15 6 -0.6918 -7.7193 -4.6268 16 7 -0.7810 -8.5854 -3.6411 17 14 -1.1799 -8.2216 -6.3586 18 1 -0.0119 -8.0758 -7.2639 19 1 -1.6295 -9.6369 -6.3553 20 1 -2.2857 -7.3515 -6.8332 21 1 -0.3634 0.0029 1.0277 22 1 -0.3633 0.8885 -0.5165 23 1 -0.3634 -0.8915 -0.5113 24 1 4.4336 1.3755 -0.0102 25 1 4.5212 -1.2434 -0.0068 26 1 0.9796 -2.6346 0.6710 27 1 2.6489 -3.1658 0.3553 28 1 1.5210 -2.2828 -2.0786 29 1 -0.1938 -3.9388 -3.3362 30 1 1.4755 -4.4692 -3.6529 31 1 0.9671 -6.6735 -2.6366 32 1 -0.7021 -6.1424 -2.3201 33 1 -1.1006 -9.4849 -3.8133 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589693184.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:13 Heat of formation + Delta-G solvation = -65.588365 kcal Electronic energy + Delta-G solvation = -15956.863006 eV Core-core repulsion = 13175.701918 eV Total energy + Delta-G solvation = -2781.161088 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.59537 -40.62421 -36.59122 -35.53080 -33.87791 -32.89729 -32.73470 -29.08345 -27.50285 -26.17349 -23.49799 -22.44025 -21.28532 -20.67920 -18.83894 -18.07071 -17.42232 -17.09018 -16.69449 -16.62577 -16.33495 -15.41468 -14.95735 -14.67105 -14.15915 -14.10436 -13.81286 -13.66221 -13.48447 -13.26472 -13.14844 -12.76679 -12.54594 -12.49676 -11.89568 -11.62708 -11.31522 -11.07957 -10.56588 -10.54766 -10.09488 -9.33049 -8.16431 -6.30669 0.71164 1.42958 1.45934 1.47816 1.55582 1.71997 2.08469 2.40602 2.55523 3.16398 3.73873 3.83753 3.91027 4.09182 4.41031 4.49773 4.53547 4.59024 4.65080 4.68151 4.84665 4.87916 5.07096 5.09944 5.31649 5.41949 5.51589 5.53903 5.65012 5.87013 6.16211 6.19178 6.60771 6.87649 7.33783 7.39689 8.96074 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.050749 B = 0.003989 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.599356 B = 7017.439729 C = 7118.912658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.006 3.994 3 O -0.184 6.184 4 C -0.036 4.036 5 C -0.215 4.215 6 C -0.214 4.214 7 C 0.195 3.805 8 N -0.714 5.714 9 C 0.512 3.488 10 O -0.589 6.589 11 C -0.119 4.119 12 C 0.041 3.959 13 C -0.545 4.545 14 H 0.076 0.924 15 C -0.006 4.006 16 N -0.938 5.938 17 Si 0.974 3.026 18 H -0.263 1.263 19 H -0.288 1.288 20 H -0.262 1.262 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.086 0.914 24 H 0.241 0.759 25 H 0.158 0.842 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.413 0.587 29 H 0.106 0.894 30 H 0.102 0.898 31 H -0.018 1.018 32 H -0.016 1.016 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.754 22.292 4.847 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.045 4.045 3 O -0.080 6.080 4 C -0.103 4.103 5 C -0.234 4.234 6 C -0.216 4.216 7 C 0.072 3.928 8 N -0.367 5.367 9 C 0.301 3.699 10 O -0.469 6.469 11 C -0.158 4.158 12 C 0.004 3.996 13 C -0.583 4.583 14 H 0.094 0.906 15 C -0.204 4.204 16 N -0.578 5.578 17 Si 0.798 3.202 18 H -0.188 1.188 19 H -0.213 1.213 20 H -0.186 1.186 21 H 0.112 0.888 22 H 0.112 0.888 23 H 0.105 0.895 24 H 0.257 0.743 25 H 0.175 0.825 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.250 0.750 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.000 1.000 32 H 0.002 0.998 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.548 21.858 5.552 23.483 hybrid contribution 0.057 -0.770 -0.654 1.012 sum 6.605 21.088 4.898 22.634 Atomic orbital electron populations 1.20478 0.83592 1.04906 1.04667 1.22701 0.94914 0.83553 1.03365 1.84051 1.17721 1.34795 1.71447 1.24671 0.84388 0.96088 1.05130 1.21973 0.97458 0.95720 1.08269 1.20145 0.94296 0.94495 1.12681 1.19360 0.99381 0.90032 0.84037 1.46017 1.66933 1.12678 1.11076 1.21344 0.75453 0.81389 0.91727 1.90658 1.55342 1.52822 1.48047 1.21636 1.03268 0.98987 0.91942 1.18694 0.94377 0.90960 0.95593 1.21695 1.43760 0.97836 0.94959 0.90613 1.26137 0.95556 0.96738 1.01952 1.70172 1.47681 1.05725 1.34213 0.85371 0.79169 0.77024 0.78658 1.18758 1.21343 1.18635 0.88829 0.88776 0.89523 0.74324 0.82454 0.91554 0.92065 0.75047 0.87612 0.87943 0.99993 0.99773 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.21 71.24 0.73 -0.47 16 2 C 0.01 0.12 7.32 24.83 0.18 0.30 16 3 O -0.18 -3.44 10.65 -2.47 -0.03 -3.46 16 4 C -0.04 -0.54 12.09 66.97 0.81 0.27 16 5 C -0.21 -3.97 10.87 22.19 0.24 -3.73 16 6 C -0.21 -4.65 5.53 -19.94 -0.11 -4.76 16 7 C 0.20 5.17 5.68 85.63 0.49 5.66 16 8 N -0.71 -20.13 5.55 -466.78 -2.59 -22.72 16 9 C 0.51 20.10 7.83 87.66 0.69 20.78 16 10 O -0.59 -29.30 15.98 -3.03 -0.05 -29.35 16 11 C -0.12 -4.80 5.64 29.85 0.17 -4.63 16 12 C 0.04 2.33 4.26 29.85 0.13 2.46 16 13 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 14 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 15 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 16 N -0.94 -59.88 13.29 21.45 0.28 -59.59 16 17 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 21 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 23 H 0.09 1.42 7.87 -2.39 -0.02 1.40 16 24 H 0.24 1.40 8.06 -2.91 -0.02 1.38 16 25 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.41 9.19 8.46 -92.71 -0.78 8.41 16 29 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 30 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 31 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 32 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 33 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -77.61 293.87 3.98 -73.63 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.32 Total: 10.07 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.01 Total: -15.00 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -2.30 Total: -82.32 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.07 Total: -32.81 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -77.61 3.98 -73.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589693184.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.044 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds