Wall clock time and date at job start Sun Mar 29 2020 21:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00028 * 2 1 4 4 H 1.48496 * 109.47097 * 239.99949 * 3 2 1 5 5 H 1.48495 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47077 * 120.00077 * 3 2 1 7 7 C 1.37880 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00314 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99849 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.35517 * 302.14593 * 9 7 2 11 11 C 1.54602 * 110.30743 * 64.28822 * 9 7 2 12 12 C 1.54935 * 102.92061 * 140.87151 * 11 9 7 13 13 N 1.48532 * 103.22887 * 322.58418 * 12 11 9 14 14 C 1.46900 * 110.99663 * 159.72192 * 13 12 11 15 15 C 1.50696 * 109.47455 * 52.60674 * 14 13 12 16 16 C 1.34512 * 125.79090 * 90.01981 * 15 14 13 17 17 C 1.41379 * 106.84332 * 180.02562 * 16 15 14 18 18 C 1.34512 * 106.84086 * 0.02562 * 17 16 15 19 19 O 1.34301 * 125.79037 * 270.02576 * 15 14 13 20 20 C 1.47904 * 105.81754 * 39.20903 * 13 12 11 21 21 H 0.97006 * 120.00251 * 359.97438 * 1 2 3 22 22 H 0.96698 * 113.99773 * 57.86159 * 10 9 7 23 23 H 1.09003 * 110.72543 * 259.23124 * 11 9 7 24 24 H 1.08998 * 110.72113 * 22.33352 * 11 9 7 25 25 H 1.09004 * 110.66200 * 204.15188 * 12 11 9 26 26 H 1.08999 * 110.66425 * 81.02533 * 12 11 9 27 27 H 1.09003 * 109.47076 * 292.60411 * 14 13 12 28 28 H 1.09005 * 109.46634 * 172.60977 * 14 13 12 29 29 H 1.08007 * 126.58064 * 359.97438 * 16 15 14 30 30 H 1.07996 * 126.58354 * 180.02562 * 17 16 15 31 31 H 1.07999 * 125.79420 * 180.02562 * 18 17 16 32 32 H 1.08996 * 109.91659 * 94.02139 * 20 13 12 33 33 H 1.08996 * 109.91499 * 215.31438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.3856 -2.5734 1.1342 11 6 0.4375 -2.6490 -1.3066 12 6 0.6022 -4.1515 -1.6469 13 7 2.0056 -4.4373 -1.2533 14 6 2.2115 -5.8771 -1.0468 15 6 1.7365 -6.6319 -2.2615 16 6 2.4845 -6.9467 -3.3342 17 6 1.6438 -7.6493 -4.2278 18 6 0.4322 -7.7213 -3.6479 19 8 0.4946 -7.1043 -2.4567 20 6 2.2345 -3.6841 -0.0012 21 1 -0.4851 0.8401 0.0004 22 1 -0.2562 -1.8521 1.1872 23 1 -0.6113 -2.4044 -1.1380 24 1 0.8559 -2.0239 -2.0955 25 1 0.4596 -4.3221 -2.7140 26 1 -0.0919 -4.7564 -1.0634 27 1 1.6475 -6.2031 -0.1728 28 1 3.2721 -6.0733 -0.8887 29 1 3.5270 -6.7079 -3.4846 30 1 1.9211 -8.0511 -5.1911 31 1 -0.4420 -8.1961 -4.0683 32 1 2.0429 -4.3261 0.8586 33 1 3.2598 -3.3157 0.0283 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522848.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:39 Heat of formation + Delta-G solvation = -47.539297 kcal Electronic energy + Delta-G solvation = -17064.027060 eV Core-core repulsion = 14283.648639 eV Total energy + Delta-G solvation = -2780.378422 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.45520 -40.10190 -36.80131 -34.12999 -33.94691 -32.73765 -30.22240 -29.69163 -26.94627 -25.46048 -22.76385 -22.25386 -21.30727 -21.11527 -19.13522 -18.23340 -17.32966 -16.91721 -16.53497 -16.35913 -15.69972 -15.27221 -15.20440 -14.24572 -13.96423 -13.71229 -13.66951 -13.52217 -13.24017 -13.10282 -12.72413 -12.61063 -12.39135 -12.31744 -12.10882 -11.89912 -11.11812 -10.79405 -10.60828 -10.13414 -9.59497 -9.25261 -8.20987 -6.35003 0.81330 1.43934 1.44207 1.52329 1.75727 2.13701 2.40590 3.00798 3.17433 3.70137 3.89607 4.14396 4.17807 4.23550 4.28934 4.36368 4.47994 4.57999 4.62542 4.75045 4.95348 5.06137 5.09923 5.18747 5.24134 5.37257 5.56705 5.67307 5.75485 5.87650 6.05813 6.14832 6.28327 6.69503 7.34752 7.43682 8.85259 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.046958 B = 0.005903 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.134556 B = 4741.988331 C = 4805.092094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.554 4.554 8 H 0.058 0.942 9 C 0.226 3.774 10 O -0.602 6.602 11 C -0.110 4.110 12 C 0.052 3.948 13 N -0.511 5.511 14 C 0.123 3.877 15 C -0.029 4.029 16 C -0.199 4.199 17 C -0.224 4.224 18 C -0.045 4.045 19 O -0.198 6.198 20 C 0.061 3.939 21 H 0.269 0.731 22 H 0.378 0.622 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.033 0.967 27 H 0.046 0.954 28 H 0.124 0.876 29 H 0.158 0.842 30 H 0.172 0.828 31 H 0.236 0.764 32 H 0.042 0.958 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 -12.367 -6.376 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.174 4.174 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.592 4.592 8 H 0.077 0.923 9 C 0.187 3.813 10 O -0.412 6.412 11 C -0.149 4.149 12 C -0.076 4.076 13 N -0.236 5.236 14 C -0.004 4.004 15 C -0.078 4.078 16 C -0.219 4.219 17 C -0.243 4.243 18 C -0.113 4.113 19 O -0.095 6.095 20 C -0.067 4.067 21 H 0.079 0.921 22 H 0.229 0.771 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.142 0.858 29 H 0.176 0.824 30 H 0.190 0.810 31 H 0.252 0.748 32 H 0.060 0.940 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.356 -12.606 -6.438 14.349 hybrid contribution -0.586 1.248 0.378 1.430 sum 1.770 -11.358 -6.060 12.995 Atomic orbital electron populations 1.69699 1.06943 1.28270 1.50864 1.25730 0.95840 1.02429 0.93381 0.85549 0.78384 0.78573 0.78734 1.19788 1.20681 1.19769 1.21935 0.93591 0.91894 1.51797 0.92334 1.19618 0.86711 0.92463 0.82540 1.86071 1.52019 1.53657 1.49418 1.22779 0.99340 0.93424 0.99374 1.23047 0.88698 0.96324 0.99501 1.65015 1.23120 1.06251 1.29260 1.20845 1.02359 0.86078 0.91085 1.22283 0.82880 1.02732 0.99933 1.21862 1.02164 1.03791 0.94101 1.22167 0.93609 1.05612 1.02872 1.24811 1.01705 1.00660 0.84075 1.84029 1.31749 1.57486 1.36266 1.22768 0.99905 0.94370 0.89637 0.92127 0.77109 0.93359 0.93334 0.91090 0.94891 0.93587 0.85794 0.82427 0.81040 0.74790 0.93997 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.01 10.88 21.45 0.23 -49.78 16 2 C 0.03 1.39 5.26 84.66 0.45 1.84 16 3 Si 0.96 42.67 29.54 68.60 2.03 44.69 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.55 -30.26 8.10 25.60 0.21 -30.05 16 8 H 0.06 3.16 7.34 -2.91 -0.02 3.13 16 9 C 0.23 11.57 0.99 -10.66 -0.01 11.56 16 10 O -0.60 -32.42 12.93 -148.98 -1.93 -34.35 16 11 C -0.11 -5.37 5.49 31.80 0.17 -5.20 16 12 C 0.05 2.15 5.40 86.65 0.47 2.62 16 13 N -0.51 -19.97 5.39 -887.58 -4.78 -24.75 16 14 C 0.12 3.90 5.56 85.56 0.48 4.38 16 15 C -0.03 -0.86 5.61 24.83 0.14 -0.72 16 16 C -0.20 -5.27 10.81 22.19 0.24 -5.03 16 17 C -0.22 -4.95 10.91 22.19 0.24 -4.70 16 18 C -0.05 -1.01 12.09 66.97 0.81 -0.20 16 19 O -0.20 -5.93 10.42 -2.47 -0.03 -5.95 16 20 C 0.06 2.65 6.17 86.44 0.53 3.18 16 21 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 22 H 0.38 20.86 7.05 -74.06 -0.52 20.34 16 23 H 0.05 2.45 8.05 -2.39 -0.02 2.44 16 24 H 0.05 2.50 7.85 -2.39 -0.02 2.48 16 25 H 0.07 2.81 7.90 -2.38 -0.02 2.79 16 26 H 0.03 1.38 8.02 -2.39 -0.02 1.36 16 27 H 0.05 1.48 7.81 -2.39 -0.02 1.46 16 28 H 0.12 3.27 8.14 -2.38 -0.02 3.25 16 29 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 31 H 0.24 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.04 1.78 7.39 -2.39 -0.02 1.76 16 33 H 0.08 3.60 7.39 -2.39 -0.02 3.58 16 Total: -1.00 -60.94 276.31 -0.16 -61.11 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.59 Total: 31.37 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 3.72 Total: -22.33 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -4.55 Total: -74.53 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -1.95 Total: -40.31 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -60.94 -0.16 -61.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522848.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.566 kcal (2) G-P(sol) polarization free energy of solvation -60.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds