Wall clock time and date at job start Sun Mar 29 2020 21:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00588 * 2 1 4 4 H 1.48497 * 109.47311 * 265.00066 * 3 2 1 5 5 H 1.48507 * 109.47055 * 24.99485 * 3 2 1 6 6 H 1.48498 * 109.47385 * 144.99557 * 3 2 1 7 7 C 1.37881 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99941 * 185.06818 * 7 2 1 9 9 C 1.50696 * 120.00128 * 5.06310 * 7 2 1 10 10 O 1.42897 * 110.87578 * 60.74913 * 9 7 2 11 11 C 1.55140 * 110.99036 * 296.90595 * 9 7 2 12 12 C 1.54316 * 103.02121 * 206.25628 * 11 9 7 13 13 N 1.47441 * 107.23348 * 22.28209 * 12 11 9 14 14 C 1.46899 * 111.00196 * 123.25976 * 13 12 11 15 15 C 1.50706 * 109.47269 * 69.87166 * 14 13 12 16 16 C 1.34509 * 125.78282 * 89.71640 * 15 14 13 17 17 C 1.41387 * 106.83677 * 179.89293 * 16 15 14 18 18 C 1.34514 * 106.84208 * 0.37121 * 17 16 15 19 19 O 1.34295 * 125.79191 * 270.02979 * 15 14 13 20 20 C 1.47843 * 108.56644 * 0.99320 * 13 12 11 21 21 H 0.97002 * 119.99645 * 0.02562 * 1 2 3 22 22 H 0.96696 * 113.99906 * 290.77238 * 10 9 7 23 23 H 1.08995 * 110.70853 * 87.86868 * 11 9 7 24 24 H 1.09002 * 110.85899 * 324.70599 * 11 9 7 25 25 H 1.09000 * 109.88702 * 262.87532 * 12 11 9 26 26 H 1.09002 * 109.89556 * 141.68962 * 12 11 9 27 27 H 1.08994 * 109.47756 * 189.87796 * 14 13 12 28 28 H 1.09006 * 109.46867 * 309.87816 * 14 13 12 29 29 H 1.08001 * 126.58426 * 0.03104 * 16 15 14 30 30 H 1.08001 * 126.57862 * 180.12404 * 17 16 15 31 31 H 1.07995 * 125.79261 * 179.79111 * 18 17 16 32 32 H 1.09001 * 110.37845 * 94.73201 * 20 13 12 33 33 H 1.09001 * 110.37641 * 217.07559 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3979 2.6809 0.5916 6 1 3.4900 1.4728 0.8031 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1960 0.0832 9 6 1.2554 -2.4967 -0.1141 10 8 0.5274 -2.5591 -1.3421 11 6 0.3139 -2.7051 1.1013 12 6 0.1885 -4.2409 1.1847 13 7 1.3636 -4.8127 0.5019 14 6 2.1118 -5.7036 1.3988 15 6 1.3061 -6.9514 1.6544 16 6 1.3478 -8.0784 0.9213 17 6 0.4404 -8.9863 1.5140 18 6 -0.1076 -8.3568 2.5690 19 8 0.4206 -7.1245 2.6490 20 6 2.2165 -3.7036 0.0243 21 1 -0.4850 0.8401 -0.0004 22 1 -0.2208 -1.9483 -1.3872 23 1 -0.6587 -2.2484 0.9181 24 1 0.7606 -2.3049 2.0114 25 1 -0.7247 -4.5660 0.6862 26 1 0.1763 -4.5559 2.2281 27 1 3.0609 -5.9725 0.9352 28 1 2.3005 -5.1932 2.3433 29 1 1.9589 -8.2565 0.0488 30 1 0.2252 -9.9909 1.1811 31 1 -0.8465 -8.7719 3.2382 32 1 2.9978 -3.4851 0.7522 33 1 2.6557 -3.9516 -0.9420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522851.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:42 Heat of formation + Delta-G solvation = -26.752023 kcal Electronic energy + Delta-G solvation = -17001.248358 eV Core-core repulsion = 14221.771340 eV Total energy + Delta-G solvation = -2779.477018 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.34366 -38.36293 -34.86146 -32.81678 -32.14378 -31.17783 -28.59973 -28.04191 -25.40036 -23.86367 -21.57424 -20.66919 -19.77302 -19.54214 -17.22521 -16.87279 -15.94264 -15.22160 -14.85813 -14.77347 -14.28680 -13.87085 -13.13698 -12.72818 -12.61153 -12.49514 -12.30878 -11.94469 -11.47447 -11.21887 -11.16852 -11.00057 -10.75571 -10.40294 -10.30403 -9.85419 -9.72226 -9.21645 -8.61508 -8.31840 -8.05784 -7.66690 -6.19849 -4.27531 1.91950 2.80524 3.19624 3.23822 3.30389 3.32750 4.30515 4.72054 4.89229 5.08422 5.17333 5.20390 5.54632 5.65507 5.74738 5.91281 5.98142 6.08685 6.10949 6.18618 6.28177 6.47243 6.65274 6.68821 6.85966 7.06111 7.33980 7.37935 7.48942 7.59505 7.67090 7.82382 8.18268 8.73941 9.40715 9.48446 10.87249 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.057598 B = 0.005611 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.007320 B = 4989.407459 C = 5054.441838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.252 3.748 10 O -0.577 6.577 11 C -0.144 4.144 12 C 0.042 3.958 13 N -0.523 5.523 14 C 0.126 3.874 15 C 0.011 3.989 16 C -0.203 4.203 17 C -0.215 4.215 18 C -0.052 4.052 19 O -0.177 6.177 20 C 0.058 3.942 21 H 0.266 0.734 22 H 0.374 0.626 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.197 0.803 32 H 0.049 0.951 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 -11.832 4.478 12.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.212 3.788 10 O -0.384 6.384 11 C -0.183 4.183 12 C -0.085 4.085 13 N -0.248 5.248 14 C -0.002 4.002 15 C -0.040 4.040 16 C -0.223 4.223 17 C -0.234 4.234 18 C -0.120 4.120 19 O -0.073 6.073 20 C -0.069 4.069 21 H 0.076 0.924 22 H 0.223 0.777 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.214 0.786 32 H 0.068 0.932 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.865 -12.251 4.148 12.963 hybrid contribution 0.153 1.520 0.773 1.712 sum 1.018 -10.731 4.920 11.849 Atomic orbital electron populations 1.69785 1.05974 1.27357 1.50090 1.24985 0.94952 0.99392 0.93623 0.86502 0.79724 0.82670 0.78434 1.20334 1.21201 1.19907 1.21502 0.93808 0.90817 1.51337 0.92102 1.19522 0.87394 0.90581 0.81297 1.86167 1.47816 1.65198 1.39193 1.23294 1.02685 0.91531 1.00780 1.22882 0.93520 0.96479 0.95621 1.63670 1.07671 1.18709 1.34768 1.20719 0.94331 0.88693 0.96500 1.22465 0.94403 0.97818 0.89313 1.21516 1.04284 0.93817 1.02658 1.21791 1.01565 1.01483 0.98580 1.23919 1.02379 0.83610 1.02072 1.84026 1.45639 1.32169 1.45447 1.23040 0.95111 0.89641 0.99073 0.92430 0.77731 0.90320 0.92491 0.91801 0.94197 0.88282 0.93345 0.83633 0.83847 0.78581 0.93232 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.94 10.85 55.43 0.60 -23.34 16 2 C 0.07 1.94 5.32 -17.82 -0.09 1.85 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.36 8.26 -34.44 -0.28 -14.64 16 8 H 0.06 1.61 7.79 -52.48 -0.41 1.20 16 9 C 0.25 6.29 0.86 -89.63 -0.08 6.21 16 10 O -0.58 -15.17 13.14 -35.23 -0.46 -15.63 16 11 C -0.14 -3.36 5.33 -24.91 -0.13 -3.49 16 12 C 0.04 0.88 6.41 -2.84 -0.02 0.86 16 13 N -0.52 -10.40 5.15 -232.69 -1.20 -11.60 16 14 C 0.13 2.06 5.08 -4.97 -0.03 2.04 16 15 C 0.01 0.17 6.23 -35.62 -0.22 -0.05 16 16 C -0.20 -2.96 10.81 -39.70 -0.43 -3.39 16 17 C -0.21 -2.74 10.91 -39.70 -0.43 -3.18 16 18 C -0.05 -0.65 12.09 29.42 0.36 -0.30 16 19 O -0.18 -2.80 10.30 5.72 0.06 -2.74 16 20 C 0.06 1.25 5.86 -2.30 -0.01 1.24 16 21 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 22 H 0.37 9.81 7.71 45.56 0.35 10.16 16 23 H 0.08 1.94 7.47 -51.93 -0.39 1.56 16 24 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 25 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.04 0.77 7.00 -51.93 -0.36 0.41 16 27 H 0.10 1.41 8.07 -51.93 -0.42 0.99 16 28 H 0.05 0.78 7.96 -51.93 -0.41 0.37 16 29 H 0.15 1.92 8.06 -52.49 -0.42 1.49 16 30 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.05 1.01 7.70 -51.93 -0.40 0.61 16 33 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 LS Contribution 277.95 15.07 4.19 4.19 Total: -1.00 -28.78 277.95 -6.91 -35.70 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -3.71 Total: 10.65 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.37 Total: -12.87 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: -0.60 Total: -34.94 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.40 Total: -18.37 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.78 -6.91 -35.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522851.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.947 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds