Wall clock time and date at job start Sun Mar 29 2020 21:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00588 * 2 1 4 4 H 1.48497 * 109.47311 * 265.00066 * 3 2 1 5 5 H 1.48507 * 109.47055 * 24.99485 * 3 2 1 6 6 H 1.48498 * 109.47385 * 144.99557 * 3 2 1 7 7 C 1.37881 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99941 * 185.06818 * 7 2 1 9 9 C 1.50696 * 120.00128 * 5.06310 * 7 2 1 10 10 O 1.42897 * 110.87578 * 60.74913 * 9 7 2 11 11 C 1.55140 * 110.99036 * 296.90595 * 9 7 2 12 12 C 1.54316 * 103.02121 * 206.25628 * 11 9 7 13 13 N 1.47441 * 107.23348 * 22.28209 * 12 11 9 14 14 C 1.46899 * 111.00196 * 123.25976 * 13 12 11 15 15 C 1.50706 * 109.47269 * 69.87166 * 14 13 12 16 16 C 1.34509 * 125.78282 * 89.71640 * 15 14 13 17 17 C 1.41387 * 106.83677 * 179.89293 * 16 15 14 18 18 C 1.34514 * 106.84208 * 0.37121 * 17 16 15 19 19 O 1.34295 * 125.79191 * 270.02979 * 15 14 13 20 20 C 1.47843 * 108.56644 * 0.99320 * 13 12 11 21 21 H 0.97002 * 119.99645 * 0.02562 * 1 2 3 22 22 H 0.96696 * 113.99906 * 290.77238 * 10 9 7 23 23 H 1.08995 * 110.70853 * 87.86868 * 11 9 7 24 24 H 1.09002 * 110.85899 * 324.70599 * 11 9 7 25 25 H 1.09000 * 109.88702 * 262.87532 * 12 11 9 26 26 H 1.09002 * 109.89556 * 141.68962 * 12 11 9 27 27 H 1.08994 * 109.47756 * 189.87796 * 14 13 12 28 28 H 1.09006 * 109.46867 * 309.87816 * 14 13 12 29 29 H 1.08001 * 126.58426 * 0.03104 * 16 15 14 30 30 H 1.08001 * 126.57862 * 180.12404 * 17 16 15 31 31 H 1.07995 * 125.79261 * 179.79111 * 18 17 16 32 32 H 1.09001 * 110.37845 * 94.73201 * 20 13 12 33 33 H 1.09001 * 110.37641 * 217.07559 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3979 2.6809 0.5916 6 1 3.4900 1.4728 0.8031 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1960 0.0832 9 6 1.2554 -2.4967 -0.1141 10 8 0.5274 -2.5591 -1.3421 11 6 0.3139 -2.7051 1.1013 12 6 0.1885 -4.2409 1.1847 13 7 1.3636 -4.8127 0.5019 14 6 2.1118 -5.7036 1.3988 15 6 1.3061 -6.9514 1.6544 16 6 1.3478 -8.0784 0.9213 17 6 0.4404 -8.9863 1.5140 18 6 -0.1076 -8.3568 2.5690 19 8 0.4206 -7.1245 2.6490 20 6 2.2165 -3.7036 0.0243 21 1 -0.4850 0.8401 -0.0004 22 1 -0.2208 -1.9483 -1.3872 23 1 -0.6587 -2.2484 0.9181 24 1 0.7606 -2.3049 2.0114 25 1 -0.7247 -4.5660 0.6862 26 1 0.1763 -4.5559 2.2281 27 1 3.0609 -5.9725 0.9352 28 1 2.3005 -5.1932 2.3433 29 1 1.9589 -8.2565 0.0488 30 1 0.2252 -9.9909 1.1811 31 1 -0.8465 -8.7719 3.2382 32 1 2.9978 -3.4851 0.7522 33 1 2.6557 -3.9516 -0.9420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522851.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:41 Heat of formation + Delta-G solvation = -47.479555 kcal Electronic energy + Delta-G solvation = -17002.147172 eV Core-core repulsion = 14221.771340 eV Total energy + Delta-G solvation = -2780.375831 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.41438 -40.09400 -36.66979 -34.19404 -33.92146 -32.63415 -30.13087 -29.80310 -27.01518 -25.51178 -22.67420 -22.08078 -21.44477 -21.06710 -19.03300 -18.11413 -17.26194 -16.93673 -16.77497 -16.22566 -15.77886 -15.55522 -14.57801 -14.27254 -14.17252 -13.72155 -13.64626 -13.41606 -13.21381 -13.01818 -12.81707 -12.65285 -12.56695 -12.22772 -12.18138 -11.70769 -11.12786 -10.77415 -10.61755 -10.09814 -9.42318 -9.19661 -8.20690 -6.35913 0.84003 1.41473 1.43843 1.51890 1.77196 2.16620 2.39250 3.03317 3.22242 3.74590 3.96991 4.03937 4.12843 4.22517 4.31679 4.39783 4.45047 4.54053 4.71719 4.87537 4.96649 5.05187 5.10203 5.22300 5.26895 5.43302 5.53579 5.68328 5.78535 5.90355 6.13154 6.21425 6.30957 6.69360 7.35340 7.41982 8.84800 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.057598 B = 0.005611 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.007320 B = 4989.407459 C = 5054.441838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.031 3.969 3 Si 0.960 3.040 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.561 4.561 8 H 0.058 0.942 9 C 0.234 3.766 10 O -0.586 6.586 11 C -0.134 4.134 12 C 0.056 3.944 13 N -0.529 5.529 14 C 0.127 3.873 15 C -0.022 4.022 16 C -0.204 4.204 17 C -0.225 4.225 18 C -0.047 4.047 19 O -0.198 6.198 20 C 0.066 3.934 21 H 0.268 0.732 22 H 0.370 0.630 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.119 0.881 28 H 0.049 0.951 29 H 0.155 0.845 30 H 0.171 0.829 31 H 0.236 0.764 32 H 0.059 0.941 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.146 -12.967 5.024 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.170 4.170 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.599 4.599 8 H 0.076 0.924 9 C 0.194 3.806 10 O -0.393 6.393 11 C -0.173 4.173 12 C -0.071 4.071 13 N -0.253 5.253 14 C 0.000 4.000 15 C -0.072 4.072 16 C -0.224 4.224 17 C -0.244 4.244 18 C -0.114 4.114 19 O -0.095 6.095 20 C -0.061 4.061 21 H 0.077 0.923 22 H 0.217 0.783 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.137 0.863 28 H 0.068 0.932 29 H 0.173 0.827 30 H 0.189 0.811 31 H 0.252 0.748 32 H 0.077 0.923 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.228 -13.403 4.696 14.255 hybrid contribution 0.005 1.790 0.613 1.892 sum 1.233 -11.613 5.309 12.829 Atomic orbital electron populations 1.69879 1.06939 1.28053 1.50104 1.25694 0.95780 1.02303 0.93219 0.85555 0.78674 0.78943 0.78321 1.20236 1.20757 1.19366 1.21800 0.93929 0.92162 1.52027 0.92402 1.19781 0.88129 0.91544 0.81116 1.86158 1.47774 1.65034 1.40295 1.23091 1.01088 0.93476 0.99672 1.22688 0.93824 0.94272 0.96353 1.63608 1.07577 1.18103 1.36059 1.20756 0.94913 0.88370 0.95985 1.22367 0.95983 0.98131 0.90692 1.21839 1.04222 0.93812 1.02509 1.22165 1.01103 1.02562 0.98532 1.24792 1.01924 0.82345 1.02310 1.84005 1.45989 1.33787 1.45686 1.22892 0.94746 0.88993 0.99439 0.92327 0.78269 0.92341 0.93548 0.92547 0.92941 0.86289 0.93241 0.82704 0.81132 0.74754 0.92262 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.27 10.85 21.45 0.23 -49.04 16 2 C 0.03 1.64 5.32 84.66 0.45 2.09 16 3 Si 0.96 42.23 29.54 68.60 2.03 44.26 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.56 -30.21 8.26 25.60 0.21 -30.00 16 8 H 0.06 3.06 7.79 -2.91 -0.02 3.04 16 9 C 0.23 11.77 0.86 -10.16 -0.01 11.76 16 10 O -0.59 -31.31 13.14 -148.98 -1.96 -33.27 16 11 C -0.13 -6.35 5.33 31.77 0.17 -6.18 16 12 C 0.06 2.31 6.41 86.65 0.56 2.86 16 13 N -0.53 -20.60 5.15 -890.09 -4.58 -25.18 16 14 C 0.13 4.00 5.08 85.56 0.43 4.44 16 15 C -0.02 -0.66 6.23 24.83 0.15 -0.51 16 16 C -0.20 -5.53 10.81 22.19 0.24 -5.29 16 17 C -0.22 -5.08 10.91 22.19 0.24 -4.84 16 18 C -0.05 -1.04 12.09 66.97 0.81 -0.23 16 19 O -0.20 -5.90 10.30 -2.44 -0.03 -5.92 16 20 C 0.07 2.84 5.86 86.77 0.51 3.34 16 21 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 22 H 0.37 19.91 7.71 -74.06 -0.57 19.34 16 23 H 0.06 2.96 7.47 -2.39 -0.02 2.94 16 24 H 0.05 2.24 8.04 -2.39 -0.02 2.22 16 25 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.05 2.00 7.00 -2.39 -0.02 1.98 16 27 H 0.12 3.19 8.07 -2.39 -0.02 3.17 16 28 H 0.05 1.54 7.96 -2.38 -0.02 1.52 16 29 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 30 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 31 H 0.24 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.06 2.38 7.70 -2.39 -0.02 2.37 16 33 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -60.77 277.95 0.00 -60.77 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.54 Total: 30.93 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 3.77 Total: -22.55 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -4.35 Total: -74.22 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.98 Total: -39.19 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -60.77 0.00 -60.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522851.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.289 kcal (2) G-P(sol) polarization free energy of solvation -60.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds