Wall clock time and date at job start Sun Mar 29 2020 22:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41382 * 126.58161 * 2 1 4 4 C 1.34505 * 106.84567 * 179.97438 * 3 2 1 5 5 O 1.34307 * 108.42111 * 359.73124 * 4 3 2 6 6 C 1.34304 * 109.47132 * 0.43938 * 5 4 3 7 7 C 1.50700 * 125.78579 * 179.82898 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.68837 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 13 13 C 1.50697 * 109.46949 * 90.00203 * 12 10 8 14 14 H 1.08004 * 120.00186 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00081 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99813 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00047 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47231 * 89.99796 * 17 15 13 19 19 H 1.48499 * 109.47342 * 210.00322 * 17 15 13 20 20 H 1.48505 * 109.46935 * 330.00024 * 17 15 13 21 21 H 1.08998 * 109.47554 * 270.04736 * 1 2 3 22 22 H 1.08995 * 109.46894 * 30.05613 * 1 2 3 23 23 H 1.09001 * 109.46766 * 150.04953 * 1 2 3 24 24 H 1.08007 * 126.57476 * 359.96955 * 3 2 1 25 25 H 1.07999 * 125.79214 * 180.02562 * 4 3 2 26 26 H 1.09004 * 109.47210 * 149.69130 * 7 6 5 27 27 H 1.08994 * 109.47551 * 29.68783 * 7 6 5 28 28 H 1.08998 * 109.46921 * 89.99095 * 11 10 8 29 29 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 30 30 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 31 31 H 1.09001 * 109.47567 * 210.00057 * 12 10 8 32 32 H 1.09005 * 109.47076 * 330.00563 * 12 10 8 33 33 H 0.97004 * 119.99796 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6811 0.0006 5 8 3.5848 -0.6616 0.0069 6 6 2.3087 -1.0801 0.0007 7 6 1.8523 -2.5164 0.0011 8 6 1.7006 -2.9956 -1.4196 9 8 1.9401 -2.2450 -2.3417 10 7 1.3048 -4.2602 -1.6656 11 6 1.0160 -5.1672 -0.5519 12 6 1.1632 -4.7280 -3.0467 13 6 2.4703 -5.3137 -3.5151 14 1 3.3213 -5.3357 -2.8505 15 6 2.5798 -5.8214 -4.7924 16 7 3.7204 -6.3330 -5.2010 17 14 1.1083 -5.7827 -5.9423 18 1 1.1158 -4.5136 -6.7133 19 1 1.1822 -6.9320 -6.8798 20 1 -0.1432 -5.8717 -5.1478 21 1 -0.3634 0.0008 1.0276 22 1 -0.3633 0.8894 -0.5147 23 1 -0.3633 -0.8905 -0.5131 24 1 2.0366 2.1690 -0.0005 25 1 4.5060 1.2924 0.0011 26 1 0.8938 -2.5930 0.5146 27 1 2.5902 -3.1320 0.5154 28 1 -0.0361 -5.0844 -0.2794 29 1 1.2341 -6.1921 -0.8520 30 1 1.6353 -4.8998 0.3043 31 1 0.3857 -5.4904 -3.0942 32 1 0.8900 -3.8899 -3.6879 33 1 3.7974 -6.6906 -6.0994 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596912101.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:39 Heat of formation + Delta-G solvation = -19.946030 kcal Electronic energy + Delta-G solvation = -16742.848336 eV Core-core repulsion = 13963.666448 eV Total energy + Delta-G solvation = -2779.181888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.38921 -39.00071 -34.96348 -34.07263 -32.64127 -31.78963 -29.14367 -28.09148 -26.21331 -25.50630 -22.43004 -21.26116 -19.73073 -18.46939 -16.95952 -16.83015 -16.60887 -15.51197 -15.22451 -15.10536 -14.30919 -13.67725 -13.43783 -13.04445 -12.81307 -12.66256 -12.55714 -12.35611 -12.23084 -12.03247 -11.80796 -11.50093 -11.23921 -10.90795 -10.52229 -10.14686 -9.54635 -9.41884 -9.13241 -8.58547 -8.11581 -7.72705 -6.08246 -4.07130 1.92247 2.74552 3.16790 3.29463 3.31158 3.35454 3.37286 3.91941 4.39901 4.77299 5.03099 5.06234 5.11071 5.26621 5.34272 5.44095 5.56273 5.61493 5.70516 5.81940 5.90876 5.99370 6.14069 6.17810 6.35998 6.67256 6.74884 6.93569 7.30947 7.36309 7.60940 8.20013 8.46973 8.91339 8.97091 9.51726 11.05212 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033066 B = 0.006221 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.586313 B = 4499.637163 C = 4630.566524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.175 4.175 3 C -0.211 4.211 4 C -0.042 4.042 5 O -0.169 6.169 6 C 0.017 3.983 7 C -0.063 4.063 8 C 0.507 3.493 9 O -0.528 6.528 10 N -0.598 5.598 11 C 0.081 3.919 12 C 0.216 3.784 13 C -0.530 4.530 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.266 1.266 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.144 0.856 25 H 0.200 0.800 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 9.255 13.728 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.176 4.176 3 C -0.231 4.231 4 C -0.109 4.109 5 O -0.065 6.065 6 C -0.034 4.034 7 C -0.102 4.102 8 C 0.293 3.707 9 O -0.404 6.404 10 N -0.331 5.331 11 C -0.063 4.063 12 C 0.095 3.905 13 C -0.568 4.568 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.190 1.190 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.162 0.838 25 H 0.216 0.784 26 H 0.133 0.867 27 H 0.125 0.875 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.125 9.346 13.058 17.187 hybrid contribution -0.568 0.091 -0.721 0.923 sum -6.694 9.438 12.337 16.914 Atomic orbital electron populations 1.20135 0.89532 1.02697 1.01344 1.20091 0.96921 0.92001 1.08587 1.21609 0.92677 0.99492 1.09282 1.23882 0.99595 0.80740 1.06727 1.84007 1.28771 1.22676 1.71057 1.21407 0.81056 0.95237 1.05661 1.20196 1.03295 0.89291 0.97463 1.20084 0.78250 0.82368 0.89996 1.90710 1.49072 1.54741 1.45916 1.47819 1.66238 1.10413 1.08597 1.21712 0.99391 0.95852 0.89380 1.19675 0.97798 0.95017 0.77969 1.21336 0.96866 1.39057 0.99554 0.90765 1.24867 0.95882 0.94659 0.97645 1.69902 1.24650 1.40397 1.18632 0.86840 0.83368 0.78088 0.81330 1.19913 1.21031 1.19046 0.91833 0.91681 0.91774 0.83803 0.78370 0.86685 0.87495 0.93458 0.90371 0.92070 0.95101 0.94546 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.99 36.01 0.36 -0.63 16 2 C -0.17 -2.65 6.16 -104.74 -0.65 -3.30 16 3 C -0.21 -2.90 10.87 -39.71 -0.43 -3.33 16 4 C -0.04 -0.57 12.09 29.41 0.36 -0.22 16 5 O -0.17 -2.91 10.65 5.70 0.06 -2.85 16 6 C 0.02 0.28 5.81 -35.62 -0.21 0.08 16 7 C -0.06 -0.95 4.41 -29.03 -0.13 -1.08 16 8 C 0.51 10.53 7.67 -10.98 -0.08 10.44 16 9 O -0.53 -13.57 15.61 5.55 0.09 -13.49 16 10 N -0.60 -12.30 2.86 -182.95 -0.52 -12.82 16 11 C 0.08 1.18 10.25 59.85 0.61 1.80 16 12 C 0.22 5.33 4.23 -5.20 -0.02 5.31 16 13 C -0.53 -15.45 9.94 -34.44 -0.34 -15.79 16 14 H 0.07 2.38 8.06 -52.48 -0.42 1.95 16 15 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 16 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 17 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 18 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.83 7.78 -51.93 -0.40 0.43 16 24 H 0.14 1.57 8.06 -52.48 -0.42 1.14 16 25 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 26 H 0.12 1.32 7.73 -51.93 -0.40 0.92 16 27 H 0.11 1.42 7.40 -51.93 -0.38 1.04 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 31 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 32 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -36.40 286.48 -4.95 -41.36 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -4.37 Total: -1.71 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.63 Total: -4.69 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.25 Total: -40.07 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.15 Total: -16.33 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -36.40 -4.95 -41.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596912101.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.412 kcal (2) G-P(sol) polarization free energy of solvation -36.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds