Wall clock time and date at job start Sun Mar 29 2020 22:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41382 * 126.58161 * 2 1 4 4 C 1.34505 * 106.84567 * 179.97438 * 3 2 1 5 5 O 1.34307 * 108.42111 * 359.73124 * 4 3 2 6 6 C 1.34304 * 109.47132 * 0.43938 * 5 4 3 7 7 C 1.50700 * 125.78579 * 179.82898 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.68837 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 13 13 C 1.50697 * 109.46949 * 90.00203 * 12 10 8 14 14 H 1.08004 * 120.00186 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00081 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99813 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00047 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47231 * 89.99796 * 17 15 13 19 19 H 1.48499 * 109.47342 * 210.00322 * 17 15 13 20 20 H 1.48505 * 109.46935 * 330.00024 * 17 15 13 21 21 H 1.08998 * 109.47554 * 270.04736 * 1 2 3 22 22 H 1.08995 * 109.46894 * 30.05613 * 1 2 3 23 23 H 1.09001 * 109.46766 * 150.04953 * 1 2 3 24 24 H 1.08007 * 126.57476 * 359.96955 * 3 2 1 25 25 H 1.07999 * 125.79214 * 180.02562 * 4 3 2 26 26 H 1.09004 * 109.47210 * 149.69130 * 7 6 5 27 27 H 1.08994 * 109.47551 * 29.68783 * 7 6 5 28 28 H 1.08998 * 109.46921 * 89.99095 * 11 10 8 29 29 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 30 30 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 31 31 H 1.09001 * 109.47567 * 210.00057 * 12 10 8 32 32 H 1.09005 * 109.47076 * 330.00563 * 12 10 8 33 33 H 0.97004 * 119.99796 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6811 0.0006 5 8 3.5848 -0.6616 0.0069 6 6 2.3087 -1.0801 0.0007 7 6 1.8523 -2.5164 0.0011 8 6 1.7006 -2.9956 -1.4196 9 8 1.9401 -2.2450 -2.3417 10 7 1.3048 -4.2602 -1.6656 11 6 1.0160 -5.1672 -0.5519 12 6 1.1632 -4.7280 -3.0467 13 6 2.4703 -5.3137 -3.5151 14 1 3.3213 -5.3357 -2.8505 15 6 2.5798 -5.8214 -4.7924 16 7 3.7204 -6.3330 -5.2010 17 14 1.1083 -5.7827 -5.9423 18 1 1.1158 -4.5136 -6.7133 19 1 1.1822 -6.9320 -6.8798 20 1 -0.1432 -5.8717 -5.1478 21 1 -0.3634 0.0008 1.0276 22 1 -0.3633 0.8894 -0.5147 23 1 -0.3633 -0.8905 -0.5131 24 1 2.0366 2.1690 -0.0005 25 1 4.5060 1.2924 0.0011 26 1 0.8938 -2.5930 0.5146 27 1 2.5902 -3.1320 0.5154 28 1 -0.0361 -5.0844 -0.2794 29 1 1.2341 -6.1921 -0.8520 30 1 1.6353 -4.8998 0.3043 31 1 0.3857 -5.4904 -3.0942 32 1 0.8900 -3.8899 -3.6879 33 1 3.7974 -6.6906 -6.0994 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596912101.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:39 Heat of formation + Delta-G solvation = -45.762738 kcal Electronic energy + Delta-G solvation = -16743.967832 eV Core-core repulsion = 13963.666448 eV Total energy + Delta-G solvation = -2780.301384 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.50449 -40.60962 -36.66810 -35.21136 -34.72772 -33.10093 -30.70803 -29.46908 -27.47385 -26.88868 -24.33291 -22.37047 -20.99686 -19.91796 -19.16474 -18.13192 -17.91948 -17.03010 -16.67715 -16.57745 -15.98454 -15.10634 -14.79805 -14.49391 -14.25398 -13.91885 -13.81265 -13.66171 -13.58673 -13.34328 -13.17658 -13.04309 -12.73909 -12.46087 -12.29176 -12.01492 -11.76225 -10.85521 -10.80247 -10.47833 -9.41442 -9.24140 -8.35747 -6.41205 0.77868 1.31335 1.36032 1.44402 1.66649 1.74893 2.11369 2.29770 2.47132 2.98759 3.62733 3.85987 4.00603 4.08581 4.26156 4.37325 4.47714 4.65133 4.68243 4.80707 4.83583 4.89603 4.94854 4.98160 5.03144 5.18210 5.34505 5.44440 5.59476 5.72543 6.21789 6.26031 6.60201 6.65608 7.19140 7.38099 8.81480 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033066 B = 0.006221 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.586313 B = 4499.637163 C = 4630.566524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.179 4.179 3 C -0.223 4.223 4 C -0.047 4.047 5 O -0.200 6.200 6 C -0.025 4.025 7 C -0.048 4.048 8 C 0.498 3.502 9 O -0.591 6.591 10 N -0.606 5.606 11 C 0.072 3.928 12 C 0.223 3.777 13 C -0.539 4.539 14 H 0.026 0.974 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.950 3.050 18 H -0.279 1.279 19 H -0.273 1.273 20 H -0.234 1.234 21 H 0.092 0.908 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.171 0.829 25 H 0.235 0.765 26 H 0.158 0.842 27 H 0.125 0.875 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.017 0.983 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 9.863 15.098 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.181 4.181 3 C -0.242 4.242 4 C -0.114 4.114 5 O -0.097 6.097 6 C -0.074 4.074 7 C -0.087 4.087 8 C 0.286 3.714 9 O -0.471 6.471 10 N -0.337 5.337 11 C -0.070 4.070 12 C 0.101 3.899 13 C -0.577 4.577 14 H 0.044 0.956 15 C -0.189 4.189 16 N -0.587 5.587 17 Si 0.772 3.228 18 H -0.204 1.204 19 H -0.198 1.198 20 H -0.157 1.157 21 H 0.110 0.890 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.189 0.811 25 H 0.251 0.749 26 H 0.175 0.825 27 H 0.143 0.857 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.518 9.925 14.496 19.525 hybrid contribution 0.274 -0.041 -1.083 1.118 sum -8.244 9.885 13.413 18.590 Atomic orbital electron populations 1.20223 0.87674 1.02624 1.03126 1.20618 0.98451 0.92112 1.06898 1.22034 0.92510 1.00582 1.09091 1.24732 1.01349 0.79936 1.05338 1.83978 1.29538 1.24354 1.71796 1.21773 0.81278 0.96273 1.08120 1.20209 1.05967 0.88950 0.93542 1.21108 0.76576 0.81780 0.91903 1.90664 1.51685 1.56450 1.48343 1.47944 1.65902 1.11440 1.08409 1.22080 1.02580 0.94049 0.88284 1.19351 0.95696 0.94435 0.80454 1.21591 0.97543 1.39301 0.99286 0.95571 1.25904 0.99382 0.94033 0.99609 1.70060 1.27393 1.41768 1.19455 0.85685 0.80214 0.77958 0.78902 1.20444 1.19837 1.15700 0.88994 0.90929 0.92665 0.81132 0.74919 0.82468 0.85716 0.89458 0.91483 0.88975 0.92672 0.96496 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 9.99 71.24 0.71 -1.05 16 2 C -0.18 -5.16 6.16 -19.94 -0.12 -5.28 16 3 C -0.22 -5.74 10.87 22.19 0.24 -5.50 16 4 C -0.05 -1.24 12.09 66.96 0.81 -0.43 16 5 O -0.20 -6.83 10.65 -2.54 -0.03 -6.86 16 6 C -0.02 -0.80 5.81 24.83 0.14 -0.66 16 7 C -0.05 -1.36 4.41 29.10 0.13 -1.23 16 8 C 0.50 20.55 7.67 87.66 0.67 21.22 16 9 O -0.59 -31.22 15.61 -3.04 -0.05 -31.27 16 10 N -0.61 -24.38 2.86 -851.12 -2.43 -26.82 16 11 C 0.07 1.91 10.25 127.77 1.31 3.22 16 12 C 0.22 10.96 4.23 85.63 0.36 11.32 16 13 C -0.54 -32.36 9.94 25.60 0.25 -32.10 16 14 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 15 C 0.01 0.51 5.47 84.66 0.46 0.98 16 16 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 17 Si 0.95 44.99 27.47 68.60 1.88 46.88 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.23 -9.81 6.54 99.48 0.65 -9.16 16 21 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.05 1.32 7.78 -2.39 -0.02 1.30 16 24 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 25 H 0.23 3.96 8.06 -2.91 -0.02 3.94 16 26 H 0.16 3.02 7.73 -2.38 -0.02 3.00 16 27 H 0.12 3.06 7.40 -2.39 -0.02 3.04 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 30 H 0.09 1.87 6.43 -2.39 -0.02 1.86 16 31 H 0.06 2.44 7.13 -2.39 -0.02 2.42 16 32 H 0.02 0.90 6.85 -2.38 -0.02 0.88 16 33 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -84.18 286.48 5.69 -78.49 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.04 Total: 9.74 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 4.97 Total: -9.51 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -2.13 Total: -87.47 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.07 Total: -38.13 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.88 kcal Total: -84.18 5.69 -78.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596912101.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.728 kcal (2) G-P(sol) polarization free energy of solvation -84.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds