Wall clock time and date at job start Sun Mar 29 2020 22:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41376 * 126.58193 * 2 1 4 4 C 1.34513 * 106.84036 * 179.83301 * 3 2 1 5 5 O 1.34302 * 108.42027 * 0.43153 * 4 3 2 6 6 C 1.34302 * 109.47622 * 359.72026 * 5 4 3 7 7 C 1.50699 * 125.78801 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47056 * 270.03981 * 7 6 5 9 9 O 1.21280 * 119.99907 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99798 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99792 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47188 * 34.99839 * 11 10 8 13 13 C 1.52997 * 109.46877 * 274.99928 * 11 10 8 14 14 C 1.50697 * 109.47042 * 154.99729 * 11 10 8 15 15 H 1.08005 * 119.99810 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00041 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99741 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 119.99914 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.47147 * 90.00807 * 18 16 14 20 20 H 1.48509 * 109.47115 * 210.00393 * 18 16 14 21 21 H 1.48499 * 109.47330 * 330.00482 * 18 16 14 22 22 H 1.08999 * 109.47015 * 269.69032 * 1 2 3 23 23 H 1.09000 * 109.46646 * 29.68184 * 1 2 3 24 24 H 1.09000 * 109.47248 * 149.68902 * 1 2 3 25 25 H 1.08006 * 126.58056 * 359.97438 * 3 2 1 26 26 H 1.08006 * 125.79024 * 180.11240 * 4 3 2 27 27 H 1.08999 * 109.47084 * 30.04457 * 7 6 5 28 28 H 1.09001 * 109.47017 * 150.04131 * 7 6 5 29 29 H 0.96998 * 119.99671 * 359.97438 * 10 8 7 30 30 H 1.08995 * 109.47381 * 60.00044 * 13 11 10 31 31 H 1.08994 * 109.47076 * 180.02562 * 13 11 10 32 32 H 1.09009 * 109.47000 * 299.99842 * 13 11 10 33 33 H 0.97003 * 119.99784 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6809 0.0038 5 8 3.5848 -0.6617 -0.0036 6 6 2.3086 -1.0802 -0.0059 7 6 1.8521 -2.5164 -0.0143 8 6 1.7007 -2.9871 -1.4379 9 8 1.9404 -2.2309 -2.3553 10 7 1.2990 -4.2484 -1.6915 11 6 1.1523 -4.7061 -3.0755 12 1 1.9186 -4.2406 -3.6952 13 6 -0.2320 -4.3163 -3.5975 14 6 1.3055 -6.2043 -3.1279 15 1 1.4929 -6.7601 -2.2210 16 6 1.2054 -6.8657 -4.3335 17 7 0.9767 -6.1890 -5.4377 18 14 1.3945 -8.7230 -4.3984 19 1 0.0660 -9.3624 -4.2205 20 1 1.9615 -9.1172 -5.7132 21 1 2.3064 -9.1659 -3.3133 22 1 -0.3633 -0.0056 1.0276 23 1 -0.3632 0.8928 -0.5089 24 1 -0.3634 -0.8872 -0.5186 25 1 2.0368 2.1690 -0.0004 26 1 4.5061 1.2922 0.0065 27 1 2.5899 -3.1351 0.4965 28 1 0.8936 -2.5960 0.4986 29 1 1.1077 -4.8532 -0.9577 30 1 -0.3428 -3.2326 -3.5596 31 1 -0.3413 -4.6572 -4.6270 32 1 -0.9984 -4.7818 -2.9777 33 1 0.9066 -6.6543 -6.2860 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:48 Heat of formation + Delta-G solvation = -35.530869 kcal Electronic energy + Delta-G solvation = -16570.415817 eV Core-core repulsion = 13790.558120 eV Total energy + Delta-G solvation = -2779.857697 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.39873 -38.79299 -34.85316 -34.03510 -32.45691 -31.77432 -29.29181 -28.18752 -25.80827 -25.23407 -21.63875 -21.14596 -19.69615 -19.24402 -17.32056 -16.74920 -16.01213 -15.35173 -15.14419 -14.86775 -14.29916 -13.86647 -13.15489 -12.98395 -12.89848 -12.58776 -12.38972 -12.29060 -11.97783 -11.62365 -11.26544 -11.09385 -10.92720 -10.70670 -10.32347 -10.23552 -9.42662 -9.12612 -9.04394 -8.55659 -8.11928 -7.91709 -6.12135 -4.21639 1.91261 2.74487 3.15899 3.24401 3.31248 3.33388 3.38903 4.16434 4.40791 4.77901 5.04818 5.08175 5.20071 5.38083 5.49683 5.54728 5.59902 5.74289 5.93499 6.01618 6.19828 6.36117 6.73715 6.82822 6.96552 7.15275 7.34669 7.45618 7.55922 7.69300 7.91701 8.15146 8.65134 8.77952 9.11837 9.45962 10.93863 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.049222 B = 0.005149 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.716365 B = 5436.397513 C = 5590.350001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.173 4.173 3 C -0.210 4.210 4 C -0.045 4.045 5 O -0.171 6.171 6 C 0.018 3.982 7 C -0.067 4.067 8 C 0.501 3.499 9 O -0.544 6.544 10 N -0.709 5.709 11 C 0.264 3.736 12 H 0.048 0.952 13 C -0.147 4.147 14 C -0.534 4.534 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.902 3.098 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.144 0.856 26 H 0.199 0.801 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.389 0.611 30 H 0.014 0.986 31 H 0.090 0.910 32 H 0.026 0.974 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.264 9.083 12.400 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.175 4.175 3 C -0.230 4.230 4 C -0.112 4.112 5 O -0.067 6.067 6 C -0.033 4.033 7 C -0.107 4.107 8 C 0.285 3.715 9 O -0.422 6.422 10 N -0.357 5.357 11 C 0.163 3.837 12 H 0.066 0.934 13 C -0.205 4.205 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.162 0.838 26 H 0.216 0.784 27 H 0.124 0.876 28 H 0.134 0.866 29 H 0.222 0.778 30 H 0.033 0.967 31 H 0.108 0.892 32 H 0.046 0.954 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.653 9.381 11.491 14.848 hybrid contribution -0.047 -1.034 0.194 1.053 sum 0.605 8.347 11.684 14.372 Atomic orbital electron populations 1.20152 0.89463 1.02847 1.01379 1.20108 0.96985 0.91985 1.08384 1.21627 0.92707 0.99539 1.09084 1.23862 0.99563 0.80748 1.07063 1.83984 1.28841 1.22668 1.71222 1.21407 0.80968 0.95303 1.05607 1.20209 1.03451 0.89330 0.97675 1.20175 0.78339 0.83157 0.89815 1.90695 1.50690 1.54449 1.46319 1.46497 1.66396 1.11232 1.11582 1.18748 0.94554 0.93987 0.76440 0.93410 1.22074 0.97911 0.96579 1.03965 1.21218 1.50754 0.91111 0.94136 0.92037 1.24895 0.94670 0.98800 0.95380 1.69908 1.48047 1.35605 0.98541 0.86439 0.78308 0.84737 0.77546 1.20540 1.21075 1.19847 0.91836 0.91680 0.91581 0.83807 0.78406 0.87635 0.86603 0.77844 0.96661 0.89163 0.95448 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.99 36.01 0.36 -0.68 16 2 C -0.17 -2.62 6.16 -104.74 -0.65 -3.27 16 3 C -0.21 -2.85 10.87 -39.71 -0.43 -3.28 16 4 C -0.04 -0.59 12.09 29.42 0.36 -0.24 16 5 O -0.17 -2.81 10.65 5.71 0.06 -2.75 16 6 C 0.02 0.29 5.81 -35.63 -0.21 0.08 16 7 C -0.07 -0.98 5.85 -29.03 -0.17 -1.15 16 8 C 0.50 10.10 7.79 -10.98 -0.09 10.01 16 9 O -0.54 -13.53 15.70 5.56 0.09 -13.44 16 10 N -0.71 -14.62 5.07 -54.94 -0.28 -14.90 16 11 C 0.26 6.77 2.56 -69.09 -0.18 6.59 16 12 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 13 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 14 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -25.04 11.32 55.43 0.63 -24.41 16 18 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.90 7.78 -51.93 -0.40 0.50 16 25 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 26 H 0.20 1.75 8.06 -52.48 -0.42 1.33 16 27 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.12 1.33 7.76 -51.93 -0.40 0.93 16 29 H 0.39 6.73 8.54 -40.82 -0.35 6.38 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 32 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 288.61 15.07 4.35 4.35 Total: -1.00 -32.80 288.61 -5.59 -38.40 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.36 Total: 5.18 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.05 Total: -8.01 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.35 Total: -39.31 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.15 Total: -16.19 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.80 -5.59 -38.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.864 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds