Wall clock time and date at job start Sun Mar 29 2020 22:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41376 * 126.58193 * 2 1 4 4 C 1.34513 * 106.84036 * 179.83301 * 3 2 1 5 5 O 1.34302 * 108.42027 * 0.43153 * 4 3 2 6 6 C 1.34302 * 109.47622 * 359.72026 * 5 4 3 7 7 C 1.50699 * 125.78801 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47056 * 270.03981 * 7 6 5 9 9 O 1.21280 * 119.99907 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99798 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99792 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47188 * 34.99839 * 11 10 8 13 13 C 1.52997 * 109.46877 * 274.99928 * 11 10 8 14 14 C 1.50697 * 109.47042 * 154.99729 * 11 10 8 15 15 H 1.08005 * 119.99810 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00041 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99741 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 119.99914 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.47147 * 90.00807 * 18 16 14 20 20 H 1.48509 * 109.47115 * 210.00393 * 18 16 14 21 21 H 1.48499 * 109.47330 * 330.00482 * 18 16 14 22 22 H 1.08999 * 109.47015 * 269.69032 * 1 2 3 23 23 H 1.09000 * 109.46646 * 29.68184 * 1 2 3 24 24 H 1.09000 * 109.47248 * 149.68902 * 1 2 3 25 25 H 1.08006 * 126.58056 * 359.97438 * 3 2 1 26 26 H 1.08006 * 125.79024 * 180.11240 * 4 3 2 27 27 H 1.08999 * 109.47084 * 30.04457 * 7 6 5 28 28 H 1.09001 * 109.47017 * 150.04131 * 7 6 5 29 29 H 0.96998 * 119.99671 * 359.97438 * 10 8 7 30 30 H 1.08995 * 109.47381 * 60.00044 * 13 11 10 31 31 H 1.08994 * 109.47076 * 180.02562 * 13 11 10 32 32 H 1.09009 * 109.47000 * 299.99842 * 13 11 10 33 33 H 0.97003 * 119.99784 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6809 0.0038 5 8 3.5848 -0.6617 -0.0036 6 6 2.3086 -1.0802 -0.0059 7 6 1.8521 -2.5164 -0.0143 8 6 1.7007 -2.9871 -1.4379 9 8 1.9404 -2.2309 -2.3553 10 7 1.2990 -4.2484 -1.6915 11 6 1.1523 -4.7061 -3.0755 12 1 1.9186 -4.2406 -3.6952 13 6 -0.2320 -4.3163 -3.5975 14 6 1.3055 -6.2043 -3.1279 15 1 1.4929 -6.7601 -2.2210 16 6 1.2054 -6.8657 -4.3335 17 7 0.9767 -6.1890 -5.4377 18 14 1.3945 -8.7230 -4.3984 19 1 0.0660 -9.3624 -4.2205 20 1 1.9615 -9.1172 -5.7132 21 1 2.3064 -9.1659 -3.3133 22 1 -0.3633 -0.0056 1.0276 23 1 -0.3632 0.8928 -0.5089 24 1 -0.3634 -0.8872 -0.5186 25 1 2.0368 2.1690 -0.0004 26 1 4.5061 1.2922 0.0065 27 1 2.5899 -3.1351 0.4965 28 1 0.8936 -2.5960 0.4986 29 1 1.1077 -4.8532 -0.9577 30 1 -0.3428 -3.2326 -3.5596 31 1 -0.3413 -4.6572 -4.6270 32 1 -0.9984 -4.7818 -2.9777 33 1 0.9066 -6.6543 -6.2860 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596998776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:48 Heat of formation + Delta-G solvation = -57.945431 kcal Electronic energy + Delta-G solvation = -16571.387785 eV Core-core repulsion = 13790.558120 eV Total energy + Delta-G solvation = -2780.829666 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.49040 -40.47886 -36.75273 -35.16763 -34.34505 -33.06915 -30.93952 -29.47896 -27.35874 -26.93673 -23.32386 -22.33008 -21.34143 -20.55404 -19.00260 -17.91762 -17.65512 -17.06684 -16.65515 -16.28636 -15.91056 -15.23174 -14.66485 -14.37067 -14.29919 -13.93605 -13.73640 -13.59734 -13.35667 -13.07465 -12.98270 -12.77739 -12.69974 -12.30282 -12.27422 -12.13318 -11.10255 -10.84206 -10.58917 -10.47555 -9.76188 -9.23542 -8.17186 -6.35090 0.79249 1.45795 1.46800 1.57347 1.68191 1.79115 2.13617 2.38823 2.74456 3.13414 3.68629 4.01946 4.08285 4.13266 4.32772 4.45835 4.65152 4.75425 4.81799 4.90483 4.92493 4.99376 5.09693 5.18554 5.34330 5.44056 5.61010 5.68920 5.71936 5.91101 6.09968 6.26204 6.73119 6.95468 7.32782 7.56044 8.89224 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.049222 B = 0.005149 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.716365 B = 5436.397513 C = 5590.350001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.182 4.182 3 C -0.226 4.226 4 C -0.044 4.044 5 O -0.195 6.195 6 C -0.021 4.021 7 C -0.051 4.051 8 C 0.498 3.502 9 O -0.597 6.597 10 N -0.702 5.702 11 C 0.270 3.730 12 H -0.006 1.006 13 C -0.133 4.133 14 C -0.546 4.546 15 H 0.076 0.924 16 C 0.013 3.987 17 N -0.920 5.920 18 Si 0.975 3.025 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.263 1.263 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.169 0.831 26 H 0.237 0.763 27 H 0.132 0.868 28 H 0.152 0.848 29 H 0.409 0.591 30 H 0.010 0.990 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 8.695 14.468 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.184 4.184 3 C -0.245 4.245 4 C -0.111 4.111 5 O -0.092 6.092 6 C -0.071 4.071 7 C -0.091 4.091 8 C 0.285 3.715 9 O -0.479 6.479 10 N -0.352 5.352 11 C 0.166 3.834 12 H 0.012 0.988 13 C -0.191 4.191 14 C -0.584 4.584 15 H 0.094 0.906 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.799 3.201 19 H -0.195 1.195 20 H -0.214 1.214 21 H -0.187 1.187 22 H 0.109 0.891 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.187 0.813 26 H 0.253 0.747 27 H 0.150 0.850 28 H 0.170 0.830 29 H 0.244 0.756 30 H 0.029 0.971 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.451 8.983 13.616 16.319 hybrid contribution 0.042 -0.790 -0.458 0.914 sum 0.494 8.193 13.158 15.509 Atomic orbital electron populations 1.20218 0.88110 1.02492 1.02982 1.20599 0.98252 0.92409 1.07100 1.22036 0.92698 1.00502 1.09252 1.24736 1.01189 0.79967 1.05174 1.83962 1.29243 1.24227 1.71771 1.21713 0.81298 0.96171 1.07930 1.20185 1.06141 0.89179 0.93549 1.21127 0.76434 0.82082 0.91828 1.90665 1.52729 1.55759 1.48725 1.46221 1.66578 1.12153 1.10246 1.18338 0.92992 0.93666 0.78393 0.98846 1.21884 0.98246 0.96239 1.02770 1.21561 1.50530 0.91493 0.94832 0.90577 1.25835 0.94188 1.03751 0.94958 1.70067 1.48955 1.37610 0.99164 0.85307 0.78671 0.78664 0.77452 1.19511 1.21412 1.18723 0.89146 0.91024 0.92945 0.81325 0.74651 0.85010 0.83029 0.75563 0.97061 0.91663 0.93730 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 9.99 71.24 0.71 -1.21 16 2 C -0.18 -5.26 6.16 -19.94 -0.12 -5.39 16 3 C -0.23 -5.72 10.87 22.19 0.24 -5.48 16 4 C -0.04 -1.09 12.09 66.97 0.81 -0.28 16 5 O -0.20 -6.24 10.65 -2.47 -0.03 -6.27 16 6 C -0.02 -0.67 5.81 24.83 0.14 -0.52 16 7 C -0.05 -1.42 5.85 29.10 0.17 -1.25 16 8 C 0.50 20.04 7.79 87.66 0.68 20.72 16 9 O -0.60 -30.65 15.70 -3.03 -0.05 -30.70 16 10 N -0.70 -28.73 5.07 -446.10 -2.26 -30.99 16 11 C 0.27 14.11 2.56 44.24 0.11 14.22 16 12 H -0.01 -0.40 7.58 -2.39 -0.02 -0.42 16 13 C -0.13 -6.77 9.26 71.98 0.67 -6.10 16 14 C -0.55 -28.83 8.73 25.60 0.22 -28.61 16 15 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 16 C 0.01 0.67 5.30 84.65 0.45 1.12 16 17 N -0.92 -53.22 11.32 21.45 0.24 -52.98 16 18 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 20 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 22 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.05 1.37 7.78 -2.39 -0.02 1.35 16 25 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 26 H 0.24 3.55 8.06 -2.91 -0.02 3.53 16 27 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.15 3.04 7.76 -2.39 -0.02 3.02 16 29 H 0.41 13.41 8.54 -92.71 -0.79 12.62 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 3.66 6.07 -2.39 -0.01 3.65 16 32 H 0.04 2.05 8.14 -2.38 -0.02 2.04 16 33 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -73.39 288.61 4.35 -69.04 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.32 Total: 20.78 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 4.09 Total: -12.78 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -2.02 Total: -83.97 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.07 Total: -36.97 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -73.39 4.35 -69.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.099 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds