Wall clock time and date at job start Sun Mar 29 2020 22:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41386 * 126.57628 * 2 1 4 4 C 1.34518 * 106.83940 * 179.97438 * 3 2 1 5 5 O 1.34302 * 108.41917 * 359.74039 * 4 3 2 6 6 C 1.34308 * 109.47551 * 0.43317 * 5 4 3 7 7 C 1.50700 * 125.78811 * 179.82885 * 6 5 4 8 8 C 1.50696 * 109.47251 * 269.69562 * 7 6 5 9 9 O 1.21287 * 120.00121 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00198 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00033 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46566 * 324.99334 * 11 10 8 13 13 C 1.52997 * 109.47289 * 84.99600 * 11 10 8 14 14 C 1.50697 * 109.47015 * 205.00057 * 11 10 8 15 15 H 1.07998 * 120.00039 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99815 * 179.97438 * 14 11 10 17 17 N 1.31517 * 119.99524 * 179.97438 * 16 14 11 18 18 Si 1.86794 * 120.00267 * 359.97438 * 16 14 11 19 19 H 1.48506 * 109.46589 * 89.99875 * 18 16 14 20 20 H 1.48490 * 109.47303 * 209.99928 * 18 16 14 21 21 H 1.48497 * 109.46869 * 330.00523 * 18 16 14 22 22 H 1.09006 * 109.46883 * 270.04177 * 1 2 3 23 23 H 1.09001 * 109.47398 * 30.03836 * 1 2 3 24 24 H 1.08998 * 109.46837 * 150.03922 * 1 2 3 25 25 H 1.07994 * 126.58006 * 359.97438 * 3 2 1 26 26 H 1.08000 * 125.78645 * 180.02562 * 4 3 2 27 27 H 1.08997 * 109.47047 * 149.69232 * 7 6 5 28 28 H 1.09001 * 109.47285 * 29.69373 * 7 6 5 29 29 H 0.96992 * 119.99904 * 359.97438 * 10 8 7 30 30 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 31 31 H 1.09001 * 109.46832 * 60.00146 * 13 11 10 32 32 H 1.09004 * 109.47261 * 300.00128 * 13 11 10 33 33 H 0.97001 * 119.99599 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6157 0.6812 0.0006 5 8 3.5848 -0.6615 0.0067 6 6 2.3086 -1.0801 0.0005 7 6 1.8522 -2.5163 0.0007 8 6 1.7007 -2.9954 -1.4200 9 8 1.9393 -2.2444 -2.3420 10 7 1.2990 -4.2582 -1.6661 11 6 1.1521 -4.7241 -3.0473 12 1 0.7950 -3.9047 -3.6711 13 6 2.5063 -5.2092 -3.5686 14 6 0.1610 -5.8584 -3.0921 15 1 -0.3120 -6.1985 -2.1827 16 6 -0.1421 -6.4619 -4.2942 17 7 -1.0067 -7.4522 -4.3332 18 14 0.6753 -5.8733 -5.8672 19 1 1.9322 -6.6334 -6.0863 20 1 -0.2422 -6.0928 -7.0140 21 1 0.9861 -4.4258 -5.7518 22 1 -0.3633 0.0007 1.0277 23 1 -0.3634 0.8896 -0.5144 24 1 -0.3633 -0.8903 -0.5132 25 1 2.0366 2.1690 -0.0004 26 1 4.5060 1.2925 0.0011 27 1 0.8939 -2.5929 0.5142 28 1 2.5902 -3.1320 0.5150 29 1 1.1078 -4.8587 -0.9288 30 1 2.3970 -5.5563 -4.5961 31 1 2.8634 -6.0286 -2.9448 32 1 3.2232 -4.3887 -3.5362 33 1 -1.2202 -7.8765 -5.1789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998777.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:50 Heat of formation + Delta-G solvation = -27.332614 kcal Electronic energy + Delta-G solvation = -16636.787889 eV Core-core repulsion = 13857.285694 eV Total energy + Delta-G solvation = -2779.502194 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.46773 -39.00154 -35.08024 -34.10310 -32.49397 -31.90727 -29.94499 -28.49656 -25.94121 -25.16119 -21.77844 -21.21484 -19.81341 -19.38279 -17.43975 -16.84724 -16.20046 -15.57953 -15.40832 -15.03415 -14.25498 -13.88753 -13.39029 -13.04617 -12.95769 -12.88394 -12.64356 -12.36285 -12.19993 -12.03065 -11.72256 -11.38967 -11.15064 -10.81629 -10.19183 -9.72269 -9.48579 -9.25273 -9.23109 -8.76515 -8.19307 -8.17269 -6.21782 -4.24278 1.83884 2.68293 3.07239 3.21171 3.24051 3.35405 3.40489 4.03443 4.31464 4.70153 4.99141 5.02281 5.13185 5.29169 5.39082 5.44713 5.54486 5.71546 5.88418 5.96517 6.15229 6.29403 6.31243 6.38415 6.56131 6.67744 6.85886 7.18474 7.27512 7.27869 7.51070 8.13340 8.50714 8.74768 8.91391 9.39287 10.90350 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.042828 B = 0.005671 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.625607 B = 4935.918575 C = 5078.845747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.170 4.170 3 C -0.210 4.210 4 C -0.044 4.044 5 O -0.172 6.172 6 C 0.015 3.985 7 C -0.065 4.065 8 C 0.503 3.497 9 O -0.545 6.545 10 N -0.701 5.701 11 C 0.237 3.763 12 H 0.048 0.952 13 C -0.161 4.161 14 C -0.535 4.535 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.885 3.115 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.262 1.262 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.144 0.856 26 H 0.199 0.801 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.396 0.604 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.999 12.249 10.455 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.172 4.172 3 C -0.229 4.229 4 C -0.112 4.112 5 O -0.068 6.068 6 C -0.036 4.036 7 C -0.105 4.105 8 C 0.288 3.712 9 O -0.423 6.423 10 N -0.350 5.350 11 C 0.133 3.867 12 H 0.066 0.934 13 C -0.220 4.220 14 C -0.573 4.573 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.529 5.529 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.187 1.187 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.162 0.838 26 H 0.216 0.784 27 H 0.137 0.863 28 H 0.125 0.875 29 H 0.229 0.771 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.299 12.434 9.653 16.955 hybrid contribution 0.288 0.079 -0.603 0.673 sum 6.588 12.513 9.051 16.789 Atomic orbital electron populations 1.20173 0.89353 1.02949 1.01531 1.20134 0.97055 0.91971 1.08013 1.21641 0.92689 0.99583 1.09006 1.23865 0.99579 0.80714 1.07022 1.83976 1.28826 1.22692 1.71322 1.21373 0.80979 0.95246 1.05999 1.20170 1.03749 0.89333 0.97235 1.20240 0.78082 0.82794 0.90113 1.90694 1.50564 1.55046 1.45965 1.46155 1.66426 1.11599 1.10782 1.19107 0.93046 0.95721 0.78792 0.93380 1.22452 0.99169 0.99979 1.00363 1.21036 1.24025 1.15960 0.96241 0.90134 1.24826 0.94573 0.94275 0.98843 1.69869 1.33194 1.23028 1.26841 0.86881 0.78530 0.80356 0.82767 1.20298 1.22129 1.18681 0.91709 0.91638 0.91464 0.83769 0.78389 0.86284 0.87479 0.77050 0.93458 0.92777 0.94569 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.99 36.01 0.36 -0.67 16 2 C -0.17 -2.48 6.16 -104.74 -0.65 -3.13 16 3 C -0.21 -2.72 10.87 -39.70 -0.43 -3.15 16 4 C -0.04 -0.55 12.09 29.42 0.36 -0.20 16 5 O -0.17 -2.66 10.65 5.70 0.06 -2.60 16 6 C 0.01 0.22 5.81 -35.63 -0.21 0.02 16 7 C -0.06 -0.90 5.85 -29.04 -0.17 -1.07 16 8 C 0.50 9.50 7.79 -10.99 -0.09 9.42 16 9 O -0.54 -12.68 15.70 5.55 0.09 -12.59 16 10 N -0.70 -13.67 5.07 -54.93 -0.28 -13.95 16 11 C 0.24 5.66 2.15 -69.08 -0.15 5.51 16 12 H 0.05 1.28 6.63 -51.93 -0.34 0.93 16 13 C -0.16 -3.66 8.97 37.16 0.33 -3.32 16 14 C -0.53 -14.37 9.31 -34.44 -0.32 -14.69 16 15 H 0.08 2.25 7.98 -52.49 -0.42 1.84 16 16 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 17 N -0.89 -26.35 13.96 55.43 0.77 -25.57 16 18 Si 0.88 21.89 24.38 -169.99 -4.14 17.75 16 19 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.90 7.78 -51.93 -0.40 0.50 16 25 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.20 1.62 8.06 -52.49 -0.42 1.19 16 27 H 0.12 1.31 7.76 -51.93 -0.40 0.90 16 28 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.40 6.57 8.54 -40.82 -0.35 6.22 16 30 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 281.80 15.07 4.25 4.25 Total: -1.00 -33.44 281.80 -4.54 -37.98 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.23 Total: 3.91 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.06 Total: -9.17 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.50 Total: -39.53 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.15 Total: -15.20 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.14 Total: 17.75 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.44 -4.54 -37.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998777.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.648 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds