Wall clock time and date at job start Sun Mar 29 2020 22:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41386 * 126.57628 * 2 1 4 4 C 1.34518 * 106.83940 * 179.97438 * 3 2 1 5 5 O 1.34302 * 108.41917 * 359.74039 * 4 3 2 6 6 C 1.34308 * 109.47551 * 0.43317 * 5 4 3 7 7 C 1.50700 * 125.78811 * 179.82885 * 6 5 4 8 8 C 1.50696 * 109.47251 * 269.69562 * 7 6 5 9 9 O 1.21287 * 120.00121 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00198 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00033 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46566 * 324.99334 * 11 10 8 13 13 C 1.52997 * 109.47289 * 84.99600 * 11 10 8 14 14 C 1.50697 * 109.47015 * 205.00057 * 11 10 8 15 15 H 1.07998 * 120.00039 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99815 * 179.97438 * 14 11 10 17 17 N 1.31517 * 119.99524 * 179.97438 * 16 14 11 18 18 Si 1.86794 * 120.00267 * 359.97438 * 16 14 11 19 19 H 1.48506 * 109.46589 * 89.99875 * 18 16 14 20 20 H 1.48490 * 109.47303 * 209.99928 * 18 16 14 21 21 H 1.48497 * 109.46869 * 330.00523 * 18 16 14 22 22 H 1.09006 * 109.46883 * 270.04177 * 1 2 3 23 23 H 1.09001 * 109.47398 * 30.03836 * 1 2 3 24 24 H 1.08998 * 109.46837 * 150.03922 * 1 2 3 25 25 H 1.07994 * 126.58006 * 359.97438 * 3 2 1 26 26 H 1.08000 * 125.78645 * 180.02562 * 4 3 2 27 27 H 1.08997 * 109.47047 * 149.69232 * 7 6 5 28 28 H 1.09001 * 109.47285 * 29.69373 * 7 6 5 29 29 H 0.96992 * 119.99904 * 359.97438 * 10 8 7 30 30 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 31 31 H 1.09001 * 109.46832 * 60.00146 * 13 11 10 32 32 H 1.09004 * 109.47261 * 300.00128 * 13 11 10 33 33 H 0.97001 * 119.99599 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6157 0.6812 0.0006 5 8 3.5848 -0.6615 0.0067 6 6 2.3086 -1.0801 0.0005 7 6 1.8522 -2.5163 0.0007 8 6 1.7007 -2.9954 -1.4200 9 8 1.9393 -2.2444 -2.3420 10 7 1.2990 -4.2582 -1.6661 11 6 1.1521 -4.7241 -3.0473 12 1 0.7950 -3.9047 -3.6711 13 6 2.5063 -5.2092 -3.5686 14 6 0.1610 -5.8584 -3.0921 15 1 -0.3120 -6.1985 -2.1827 16 6 -0.1421 -6.4619 -4.2942 17 7 -1.0067 -7.4522 -4.3332 18 14 0.6753 -5.8733 -5.8672 19 1 1.9322 -6.6334 -6.0863 20 1 -0.2422 -6.0928 -7.0140 21 1 0.9861 -4.4258 -5.7518 22 1 -0.3633 0.0007 1.0277 23 1 -0.3634 0.8896 -0.5144 24 1 -0.3633 -0.8903 -0.5132 25 1 2.0366 2.1690 -0.0004 26 1 4.5060 1.2925 0.0011 27 1 0.8939 -2.5929 0.5142 28 1 2.5902 -3.1320 0.5150 29 1 1.1078 -4.8587 -0.9288 30 1 2.3970 -5.5563 -4.5961 31 1 2.8634 -6.0286 -2.9448 32 1 3.2232 -4.3887 -3.5362 33 1 -1.2202 -7.8765 -5.1789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596998777.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:50 Heat of formation + Delta-G solvation = -51.361952 kcal Electronic energy + Delta-G solvation = -16637.829879 eV Core-core repulsion = 13857.285694 eV Total energy + Delta-G solvation = -2780.544185 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.49199 -40.57981 -36.88830 -35.17161 -34.41848 -33.20232 -31.57213 -29.59750 -27.26736 -26.96681 -23.38896 -22.31863 -21.40718 -20.57276 -19.15671 -17.98923 -17.83115 -17.31215 -16.70631 -16.31837 -15.94111 -15.17827 -14.98054 -14.70503 -14.32944 -14.12513 -13.93386 -13.70879 -13.57579 -13.36952 -13.25844 -12.88520 -12.79285 -12.31156 -12.15266 -11.63996 -11.28644 -10.89580 -10.84732 -10.47727 -9.89607 -9.24053 -8.38498 -6.43822 0.78738 1.26185 1.34745 1.43947 1.67669 1.72230 2.11449 2.25522 2.59358 2.97840 3.67427 4.01656 4.02926 4.09449 4.31709 4.44772 4.46566 4.55625 4.65344 4.70108 4.81177 4.91026 4.96021 5.01246 5.18555 5.31130 5.35140 5.42156 5.63443 5.70793 6.13706 6.25618 6.58041 6.85622 7.19218 7.44229 8.76601 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.042828 B = 0.005671 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.625607 B = 4935.918575 C = 5078.845747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.182 4.182 3 C -0.226 4.226 4 C -0.042 4.042 5 O -0.192 6.192 6 C -0.020 4.020 7 C -0.052 4.052 8 C 0.503 3.497 9 O -0.591 6.591 10 N -0.698 5.698 11 C 0.241 3.759 12 H 0.020 0.980 13 C -0.156 4.156 14 C -0.531 4.531 15 H 0.061 0.939 16 C 0.031 3.969 17 N -0.932 5.932 18 Si 0.936 3.064 19 H -0.260 1.260 20 H -0.292 1.292 21 H -0.266 1.266 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.168 0.832 26 H 0.238 0.762 27 H 0.149 0.851 28 H 0.136 0.864 29 H 0.411 0.589 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.069 13.354 11.366 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.184 4.184 3 C -0.245 4.245 4 C -0.108 4.108 5 O -0.089 6.089 6 C -0.070 4.070 7 C -0.091 4.091 8 C 0.291 3.709 9 O -0.472 6.472 10 N -0.348 5.348 11 C 0.136 3.864 12 H 0.038 0.962 13 C -0.214 4.214 14 C -0.569 4.569 15 H 0.080 0.920 16 C -0.169 4.169 17 N -0.571 5.571 18 Si 0.763 3.237 19 H -0.186 1.186 20 H -0.219 1.219 21 H -0.191 1.191 22 H 0.107 0.893 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.185 0.815 26 H 0.254 0.746 27 H 0.166 0.834 28 H 0.154 0.846 29 H 0.247 0.753 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.373 13.528 10.604 18.704 hybrid contribution -0.066 -0.180 -0.814 0.837 sum 7.307 13.349 9.790 18.095 Atomic orbital electron populations 1.20221 0.88333 1.02478 1.02930 1.20590 0.98128 0.92567 1.07097 1.22024 0.92749 1.00441 1.09303 1.24728 1.01103 0.79981 1.05029 1.83959 1.29058 1.24138 1.71771 1.21652 0.81311 0.96028 1.08031 1.20164 1.06194 0.89200 0.93576 1.21076 0.76291 0.81640 0.91937 1.90667 1.52422 1.56084 1.48061 1.45969 1.66704 1.12543 1.09544 1.18751 0.93010 0.93609 0.80996 0.96234 1.22350 0.98306 1.00609 1.00100 1.21248 1.24037 1.16154 0.95460 0.92043 1.25508 0.95173 0.94462 1.01742 1.69967 1.34865 1.24503 1.27755 0.86054 0.78331 0.79704 0.79572 1.18579 1.21884 1.19129 0.89323 0.91031 0.92980 0.81476 0.74594 0.83377 0.84585 0.75273 0.94182 0.91348 0.93933 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 9.99 71.24 0.71 -1.21 16 2 C -0.18 -5.02 6.16 -19.94 -0.12 -5.14 16 3 C -0.23 -5.38 10.87 22.19 0.24 -5.14 16 4 C -0.04 -0.95 12.09 66.97 0.81 -0.14 16 5 O -0.19 -5.65 10.65 -2.52 -0.03 -5.68 16 6 C -0.02 -0.60 5.81 24.83 0.14 -0.45 16 7 C -0.05 -1.34 5.85 29.10 0.17 -1.16 16 8 C 0.50 18.51 7.79 87.66 0.68 19.19 16 9 O -0.59 -27.47 15.70 -3.05 -0.05 -27.52 16 10 N -0.70 -26.57 5.07 -446.09 -2.26 -28.83 16 11 C 0.24 11.45 2.15 44.24 0.10 11.55 16 12 H 0.02 1.06 6.63 -2.39 -0.02 1.04 16 13 C -0.16 -6.84 8.97 71.98 0.65 -6.19 16 14 C -0.53 -28.62 9.31 25.60 0.24 -28.38 16 15 H 0.06 3.48 7.98 -2.91 -0.02 3.45 16 16 C 0.03 1.75 5.45 84.65 0.46 2.21 16 17 N -0.93 -55.48 13.96 21.45 0.30 -55.18 16 18 Si 0.94 44.97 24.38 68.60 1.67 46.64 16 19 H -0.26 -11.75 6.87 99.48 0.68 -11.07 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 21 H -0.27 -12.90 6.53 99.48 0.65 -12.25 16 22 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 1.35 7.78 -2.39 -0.02 1.33 16 25 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 26 H 0.24 3.08 8.06 -2.91 -0.02 3.06 16 27 H 0.15 2.86 7.76 -2.39 -0.02 2.85 16 28 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.41 13.07 8.54 -92.71 -0.79 12.28 16 30 H 0.04 1.80 3.27 -2.39 -0.01 1.80 16 31 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -72.40 281.80 3.96 -68.44 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.25 Total: 16.99 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.08 Total: -14.87 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -1.96 Total: -84.01 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.07 Total: -33.20 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.67 Total: 46.64 kcal Total: -72.40 3.96 -68.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998777.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.078 kcal (2) G-P(sol) polarization free energy of solvation -72.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds