Wall clock time and date at job start Sun Mar 29 2020 21:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00392 * 2 1 4 4 H 1.48497 * 109.46933 * 270.00165 * 3 2 1 5 5 H 1.48499 * 109.46849 * 30.00226 * 3 2 1 6 6 H 1.48499 * 109.47225 * 149.99878 * 3 2 1 7 7 C 1.37878 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00432 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99646 * 0.02562 * 7 2 1 10 10 C 1.53512 * 114.17058 * 180.02562 * 9 7 2 11 11 N 1.47481 * 87.93439 * 220.13835 * 10 9 7 12 12 C 1.46904 * 111.00276 * 138.70091 * 11 10 9 13 13 C 1.50697 * 109.46872 * 170.00371 * 12 11 10 14 14 C 1.34511 * 125.79278 * 90.00325 * 13 12 11 15 15 C 1.41386 * 106.84141 * 180.02562 * 14 13 12 16 16 C 1.34507 * 106.84010 * 0.02562 * 15 14 13 17 17 C 1.50703 * 125.78834 * 180.26118 * 16 15 14 18 18 O 1.42898 * 109.47252 * 89.71032 * 17 16 15 19 19 O 1.34304 * 108.42311 * 359.97438 * 16 15 14 20 20 C 1.47478 * 87.83696 * 27.00958 * 11 10 9 21 21 H 0.97006 * 119.99726 * 359.97438 * 1 2 3 22 22 H 1.08998 * 113.25824 * 312.94873 * 9 7 2 23 23 H 1.09003 * 113.47947 * 105.37490 * 10 9 7 24 24 H 1.09000 * 113.53212 * 334.91225 * 10 9 7 25 25 H 1.08994 * 109.46843 * 50.00235 * 12 11 10 26 26 H 1.09003 * 109.47163 * 289.99929 * 12 11 10 27 27 H 1.08000 * 126.57995 * 0.05173 * 14 13 12 28 28 H 1.08004 * 126.57483 * 179.97438 * 15 14 13 29 29 H 1.09000 * 109.47001 * 209.71539 * 17 16 15 30 30 H 1.09004 * 109.47138 * 329.71307 * 17 16 15 31 31 H 0.96697 * 114.00478 * 179.97438 * 18 17 16 32 32 H 1.08999 * 113.47970 * 87.75298 * 20 11 10 33 33 H 1.09003 * 113.48348 * 218.22450 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.1495 -3.7438 -0.0016 11 7 1.2056 -4.3598 -0.9527 12 6 1.9219 -5.0893 -2.0075 13 6 0.9402 -5.9025 -2.8113 14 6 0.2859 -5.4847 -3.9097 15 6 -0.5260 -6.5605 -4.3369 16 6 -0.3196 -7.5711 -3.4736 17 6 -0.9704 -8.9290 -3.5344 18 8 -0.1686 -9.8064 -4.3277 19 8 0.5696 -7.1670 -2.5517 20 6 0.8527 -2.9987 -1.3976 21 1 -0.4850 0.8401 0.0004 22 1 0.4446 -2.5312 0.7310 23 1 2.1881 -4.2515 0.9622 24 1 3.1384 -3.5666 -0.4244 25 1 2.6584 -5.7528 -1.5544 26 1 2.4269 -4.3788 -2.6620 27 1 0.3657 -4.5139 -4.3762 28 1 -1.1859 -6.5689 -5.1918 29 1 -1.0629 -9.3331 -2.5264 30 1 -1.9604 -8.8378 -3.9815 31 1 -0.5276 -10.7005 -4.4103 32 1 1.4952 -2.6217 -2.1933 33 1 -0.2078 -2.8748 -1.6170 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597194057.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:37 Heat of formation + Delta-G solvation = 2.795320 kcal Electronic energy + Delta-G solvation = -16241.160560 eV Core-core repulsion = 13462.964811 eV Total energy + Delta-G solvation = -2778.195749 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.35599 -38.92288 -37.02507 -33.10089 -32.70580 -31.62336 -29.12511 -26.49524 -24.87016 -24.38797 -22.24788 -21.47400 -19.91540 -18.66333 -17.81645 -16.88907 -16.42935 -15.67360 -14.93677 -14.82576 -14.71680 -14.37560 -13.93707 -13.15833 -13.02972 -12.72185 -12.56003 -11.97508 -11.84124 -11.58900 -11.14550 -10.99488 -10.63280 -10.39089 -10.33327 -9.86044 -9.68208 -9.33810 -8.99628 -8.48049 -8.19527 -8.05168 -6.07688 -4.12821 1.81438 2.75882 3.02863 3.27443 3.34798 3.37604 4.28455 4.38290 4.75994 4.87818 5.01471 5.09213 5.21937 5.25063 5.30493 5.49162 5.72293 5.98091 6.04808 6.14181 6.26801 6.30624 6.40490 6.63232 6.65074 6.72592 7.07883 7.11466 7.31660 7.42164 7.69457 7.86114 7.99441 8.33631 8.90623 9.52555 11.01846 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.060365 B = 0.004462 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.729909 B = 6273.431770 C = 6424.260541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.042 3.958 10 C -0.004 4.004 11 N -0.482 5.482 12 C 0.092 3.908 13 C 0.034 3.966 14 C -0.216 4.216 15 C -0.179 4.179 16 C -0.039 4.039 17 C 0.162 3.838 18 O -0.568 6.568 19 O -0.166 6.166 20 C 0.005 3.995 21 H 0.262 0.738 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.383 0.617 32 H 0.056 0.944 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 -14.347 -7.263 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.023 3.977 10 C -0.133 4.133 11 N -0.205 5.205 12 C -0.036 4.036 13 C -0.018 4.018 14 C -0.236 4.236 15 C -0.198 4.198 16 C -0.089 4.089 17 C 0.085 3.915 18 O -0.375 6.375 19 O -0.062 6.062 20 C -0.124 4.124 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.165 0.835 28 H 0.163 0.837 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.231 0.769 32 H 0.074 0.926 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.343 -14.368 -6.847 15.973 hybrid contribution 0.569 1.031 -0.636 1.339 sum -0.775 -13.337 -7.483 15.312 Atomic orbital electron populations 1.69970 1.06020 1.26810 1.49432 1.25023 0.94820 0.99203 0.94530 0.86605 0.79937 0.83382 0.78153 1.20631 1.21131 1.19788 1.21024 0.92770 0.90171 1.51653 0.92320 1.20096 0.94290 0.90772 0.92526 1.24054 0.95768 0.97622 0.95824 1.68927 1.27301 1.14538 1.09700 1.21186 0.92270 0.95818 0.94343 1.22468 1.00101 0.82630 0.96554 1.21566 1.01674 1.00916 0.99417 1.21537 1.03647 0.93507 1.01138 1.21776 0.97660 0.96716 0.92755 1.20218 0.91526 0.84168 0.95563 1.86579 1.52139 1.25368 1.73390 1.83945 1.48044 1.28053 1.46158 1.24177 1.00533 0.86201 1.01487 0.92812 0.91674 0.91664 0.92471 0.90092 0.90652 0.83484 0.83701 0.91843 0.90443 0.76910 0.92598 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.26 55.43 0.74 -24.66 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -13.92 8.83 -34.44 -0.30 -14.23 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.04 1.05 3.76 -91.24 -0.34 0.71 16 10 C 0.00 -0.09 7.25 -7.54 -0.05 -0.15 16 11 N -0.48 -9.98 6.32 -246.08 -1.55 -11.53 16 12 C 0.09 1.63 5.35 -4.98 -0.03 1.60 16 13 C 0.03 0.60 6.91 -35.63 -0.25 0.36 16 14 C -0.22 -3.60 10.81 -39.70 -0.43 -4.03 16 15 C -0.18 -2.69 10.81 -39.70 -0.43 -3.12 16 16 C -0.04 -0.59 6.95 -35.63 -0.25 -0.84 16 17 C 0.16 1.71 7.57 36.01 0.27 1.99 16 18 O -0.57 -5.97 13.64 -35.23 -0.48 -6.45 16 19 O -0.17 -2.97 10.65 5.70 0.06 -2.91 16 20 C 0.00 0.11 7.28 -7.54 -0.05 0.05 16 21 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 22 H 0.07 1.79 8.11 -51.93 -0.42 1.37 16 23 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.06 1.14 7.87 -51.93 -0.41 0.73 16 25 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 26 H 0.08 1.26 7.30 -51.93 -0.38 0.88 16 27 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 28 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.38 1.75 9.12 45.56 0.42 2.17 16 32 H 0.06 1.26 7.38 -51.93 -0.38 0.87 16 33 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 288.37 15.07 4.35 4.35 Total: -1.00 -31.55 288.37 -7.55 -39.10 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -3.68 Total: 2.21 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -1.96 Total: -15.91 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.82 Total: -36.19 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.42 Total: -9.36 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.55 -7.55 -39.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194057.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.896 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds