Wall clock time and date at job start Sun Mar 29 2020 21:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00392 * 2 1 4 4 H 1.48497 * 109.46933 * 270.00165 * 3 2 1 5 5 H 1.48499 * 109.46849 * 30.00226 * 3 2 1 6 6 H 1.48499 * 109.47225 * 149.99878 * 3 2 1 7 7 C 1.37878 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00432 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99646 * 0.02562 * 7 2 1 10 10 C 1.53512 * 114.17058 * 180.02562 * 9 7 2 11 11 N 1.47481 * 87.93439 * 220.13835 * 10 9 7 12 12 C 1.46904 * 111.00276 * 138.70091 * 11 10 9 13 13 C 1.50697 * 109.46872 * 170.00371 * 12 11 10 14 14 C 1.34511 * 125.79278 * 90.00325 * 13 12 11 15 15 C 1.41386 * 106.84141 * 180.02562 * 14 13 12 16 16 C 1.34507 * 106.84010 * 0.02562 * 15 14 13 17 17 C 1.50703 * 125.78834 * 180.26118 * 16 15 14 18 18 O 1.42898 * 109.47252 * 89.71032 * 17 16 15 19 19 O 1.34304 * 108.42311 * 359.97438 * 16 15 14 20 20 C 1.47478 * 87.83696 * 27.00958 * 11 10 9 21 21 H 0.97006 * 119.99726 * 359.97438 * 1 2 3 22 22 H 1.08998 * 113.25824 * 312.94873 * 9 7 2 23 23 H 1.09003 * 113.47947 * 105.37490 * 10 9 7 24 24 H 1.09000 * 113.53212 * 334.91225 * 10 9 7 25 25 H 1.08994 * 109.46843 * 50.00235 * 12 11 10 26 26 H 1.09003 * 109.47163 * 289.99929 * 12 11 10 27 27 H 1.08000 * 126.57995 * 0.05173 * 14 13 12 28 28 H 1.08004 * 126.57483 * 179.97438 * 15 14 13 29 29 H 1.09000 * 109.47001 * 209.71539 * 17 16 15 30 30 H 1.09004 * 109.47138 * 329.71307 * 17 16 15 31 31 H 0.96697 * 114.00478 * 179.97438 * 18 17 16 32 32 H 1.08999 * 113.47970 * 87.75298 * 20 11 10 33 33 H 1.09003 * 113.48348 * 218.22450 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.1495 -3.7438 -0.0016 11 7 1.2056 -4.3598 -0.9527 12 6 1.9219 -5.0893 -2.0075 13 6 0.9402 -5.9025 -2.8113 14 6 0.2859 -5.4847 -3.9097 15 6 -0.5260 -6.5605 -4.3369 16 6 -0.3196 -7.5711 -3.4736 17 6 -0.9704 -8.9290 -3.5344 18 8 -0.1686 -9.8064 -4.3277 19 8 0.5696 -7.1670 -2.5517 20 6 0.8527 -2.9987 -1.3976 21 1 -0.4850 0.8401 0.0004 22 1 0.4446 -2.5312 0.7310 23 1 2.1881 -4.2515 0.9622 24 1 3.1384 -3.5666 -0.4244 25 1 2.6584 -5.7528 -1.5544 26 1 2.4269 -4.3788 -2.6620 27 1 0.3657 -4.5139 -4.3762 28 1 -1.1859 -6.5689 -5.1918 29 1 -1.0629 -9.3331 -2.5264 30 1 -1.9604 -8.8378 -3.9815 31 1 -0.5276 -10.7005 -4.4103 32 1 1.4952 -2.6217 -2.1933 33 1 -0.2078 -2.8748 -1.6170 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597194057.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:37 Heat of formation + Delta-G solvation = -21.764746 kcal Electronic energy + Delta-G solvation = -16242.225564 eV Core-core repulsion = 13462.964811 eV Total energy + Delta-G solvation = -2779.260753 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.58578 -40.65706 -37.79708 -34.92565 -34.06916 -33.07000 -30.49491 -28.11249 -26.61797 -25.87198 -23.79605 -22.72002 -21.15193 -20.51338 -18.75174 -18.57489 -17.75029 -17.08203 -16.55723 -16.33616 -15.92402 -15.71713 -15.52508 -14.68193 -14.21783 -14.01298 -13.87467 -13.79359 -13.29730 -12.97559 -12.84933 -12.73952 -12.37305 -12.05114 -11.73321 -11.26011 -11.10137 -10.94284 -10.86001 -10.51397 -9.82218 -9.39666 -8.14983 -6.26909 0.60799 1.44074 1.45086 1.54508 1.55839 1.88108 2.43276 3.14347 3.29672 3.45097 3.83529 3.97479 4.02391 4.06639 4.21785 4.29101 4.42065 4.45729 4.50631 4.65158 4.79573 4.81006 4.92752 4.97542 5.09651 5.21077 5.39203 5.54472 5.62148 5.83460 6.17509 6.25086 6.30895 6.83072 6.87334 7.42178 8.94941 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.060365 B = 0.004462 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.729909 B = 6273.431770 C = 6424.260541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.064 0.936 9 C 0.021 3.979 10 C 0.011 3.989 11 N -0.487 5.487 12 C 0.095 3.905 13 C 0.003 3.997 14 C -0.222 4.222 15 C -0.190 4.190 16 C -0.045 4.045 17 C 0.163 3.837 18 O -0.589 6.589 19 O -0.186 6.186 20 C 0.020 3.980 21 H 0.263 0.737 22 H 0.029 0.971 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.152 0.848 28 H 0.173 0.827 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.408 0.592 32 H 0.060 0.940 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 -15.268 -8.155 17.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.082 0.918 9 C 0.002 3.998 10 C -0.117 4.117 11 N -0.210 5.210 12 C -0.033 4.033 13 C -0.048 4.048 14 C -0.242 4.242 15 C -0.209 4.209 16 C -0.095 4.095 17 C 0.086 3.914 18 O -0.400 6.400 19 O -0.083 6.083 20 C -0.110 4.110 21 H 0.071 0.929 22 H 0.047 0.953 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.170 0.830 28 H 0.190 0.810 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.261 0.739 32 H 0.078 0.922 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.722 -15.324 -7.743 17.184 hybrid contribution 0.329 1.194 -0.390 1.299 sum -0.393 -14.130 -8.133 16.308 Atomic orbital electron populations 1.70104 1.07647 1.27625 1.50779 1.25851 0.95574 1.02808 0.94253 0.85537 0.78770 0.78912 0.78333 1.19980 1.21126 1.18800 1.21375 0.93168 0.91170 1.51106 0.91794 1.20038 0.94543 0.92224 0.92978 1.23895 0.95674 0.95388 0.96713 1.68838 1.28126 1.13334 1.10661 1.21169 0.92420 0.95942 0.93743 1.22483 1.01524 0.83231 0.97528 1.21845 1.01546 1.01600 0.99185 1.21904 1.03992 0.92872 1.02161 1.22800 0.96273 0.98777 0.91634 1.20428 0.92035 0.82137 0.96757 1.86497 1.52989 1.27198 1.73299 1.83927 1.48957 1.28068 1.47300 1.23893 0.99147 0.87678 1.00247 0.92851 0.95289 0.90522 0.90890 0.88477 0.89676 0.83008 0.80988 0.90710 0.87194 0.73949 0.92229 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.07 13.26 21.45 0.28 -53.79 16 2 C 0.01 0.80 5.46 84.66 0.46 1.26 16 3 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.53 -28.59 8.83 25.60 0.23 -28.36 16 8 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 9 C 0.02 1.08 3.76 -11.19 -0.04 1.04 16 10 C 0.01 0.47 7.25 83.58 0.61 1.08 16 11 N -0.49 -20.02 6.32 -932.44 -5.89 -25.91 16 12 C 0.10 3.27 5.35 85.56 0.46 3.73 16 13 C 0.00 0.11 6.91 24.83 0.17 0.28 16 14 C -0.22 -7.25 10.81 22.19 0.24 -7.01 16 15 C -0.19 -5.41 10.81 22.19 0.24 -5.17 16 16 C -0.05 -1.30 6.95 24.83 0.17 -1.13 16 17 C 0.16 3.00 7.57 71.24 0.54 3.54 16 18 O -0.59 -10.80 13.64 -148.98 -2.03 -12.84 16 19 O -0.19 -6.48 10.65 -2.51 -0.03 -6.51 16 20 C 0.02 0.91 7.28 83.58 0.61 1.51 16 21 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 22 H 0.03 1.66 8.11 -2.39 -0.02 1.64 16 23 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 24 H 0.07 2.77 7.87 -2.39 -0.02 2.75 16 25 H 0.10 2.99 8.08 -2.39 -0.02 2.97 16 26 H 0.09 2.74 7.30 -2.39 -0.02 2.72 16 27 H 0.15 4.65 8.06 -2.91 -0.02 4.62 16 28 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.41 2.53 9.12 -74.06 -0.68 1.85 16 32 H 0.06 2.68 7.38 -2.39 -0.02 2.67 16 33 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -68.06 288.37 -1.52 -69.58 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.44 Total: 13.98 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 3.68 Total: -29.23 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -5.60 Total: -79.70 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -2.06 Total: -19.35 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -68.06 -1.52 -69.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194057.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.814 kcal (2) G-P(sol) polarization free energy of solvation -68.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds