Wall clock time and date at job start Sun Mar 29 2020 22:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00431 * 2 1 4 4 H 1.48494 * 109.47102 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46798 * 299.99966 * 3 2 1 6 6 H 1.48500 * 109.47120 * 59.99671 * 3 2 1 7 7 C 1.37882 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00014 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99769 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46851 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47232 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99566 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00316 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00293 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47315 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.46958 * 179.97438 * 15 14 13 17 17 C 1.41381 * 126.57424 * 90.00101 * 16 15 14 18 18 C 1.34520 * 106.83580 * 179.72986 * 17 16 15 19 19 O 1.34302 * 108.42210 * 0.26485 * 18 17 16 20 20 C 1.34302 * 109.47622 * 359.97438 * 19 18 17 21 21 H 0.97012 * 119.99664 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.46775 * 60.00669 * 9 7 2 23 23 H 1.08990 * 109.47361 * 300.00092 * 9 7 2 24 24 H 1.09007 * 109.46911 * 60.00306 * 10 9 7 25 25 H 1.08995 * 109.47784 * 300.00422 * 10 9 7 26 26 H 0.97006 * 119.99880 * 0.02562 * 13 11 10 27 27 H 1.08995 * 109.47113 * 59.99305 * 14 13 11 28 28 H 1.09004 * 109.46789 * 299.99907 * 14 13 11 29 29 H 1.09007 * 109.47167 * 59.99706 * 15 14 13 30 30 H 1.08999 * 109.46762 * 299.99600 * 15 14 13 31 31 H 1.08002 * 126.58570 * 359.97438 * 17 16 15 32 32 H 1.08004 * 125.78733 * 180.22473 * 18 17 16 33 33 H 1.07999 * 125.79201 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4915 -4.9672 -0.0025 12 8 0.2787 -4.9671 -0.0024 13 7 2.1653 -6.1344 -0.0031 14 6 1.4328 -7.4031 -0.0043 15 6 2.4270 -8.5661 -0.0054 16 6 1.6733 -9.8712 -0.0060 17 6 1.2516 -10.6000 -1.1418 18 6 0.6239 -11.6998 -0.6880 19 8 0.6379 -11.6728 0.6547 20 6 1.2702 -10.5646 1.0738 21 1 -0.4850 0.8402 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.8724 -3.6048 0.8878 25 1 2.8711 -3.6041 -0.8922 26 1 3.1354 -6.1345 -0.0028 27 1 0.8064 -7.4602 -0.8944 28 1 0.8058 -7.4615 0.8855 29 1 3.0537 -8.5092 0.8846 30 1 3.0535 -8.5075 -0.8954 31 1 1.4074 -10.3281 -2.1753 32 1 0.1829 -12.4729 -1.2997 33 1 1.4311 -10.2802 2.1032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598203474.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:30 Heat of formation + Delta-G solvation = -42.900348 kcal Electronic energy + Delta-G solvation = -15571.434245 eV Core-core repulsion = 12791.256983 eV Total energy + Delta-G solvation = -2780.177262 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.76475 -39.10033 -35.78689 -33.51108 -33.40761 -31.16777 -30.48146 -28.54454 -25.73342 -23.47237 -21.82825 -21.38663 -20.57728 -19.52061 -17.62175 -16.77424 -16.22877 -15.56568 -15.53849 -15.44521 -14.85607 -14.38632 -14.25261 -13.12710 -13.03992 -12.87281 -12.58196 -12.18198 -12.11322 -12.10373 -11.22255 -11.13031 -10.92589 -10.56680 -9.93583 -9.89976 -9.64162 -9.15146 -8.99217 -8.77374 -8.72821 -8.30532 -5.94468 -3.98746 1.54069 2.34252 2.92236 3.30231 3.33679 3.40461 3.43825 3.62101 4.48851 4.53965 4.65230 4.83421 4.98567 5.11118 5.39884 5.40468 5.49420 5.61702 5.62383 5.87496 6.03421 6.05105 6.25587 6.26092 6.28049 6.75933 6.88136 6.92560 7.76778 7.88974 7.92882 8.09498 8.40865 8.82558 9.10338 9.64700 11.16534 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.083335 B = 0.003309 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.913425 B = 8460.923503 C = 8589.945781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.535 6.535 13 N -0.746 5.746 14 C 0.125 3.875 15 C -0.060 4.060 16 C -0.176 4.176 17 C -0.207 4.207 18 C -0.044 4.044 19 O -0.179 6.179 20 C -0.037 4.037 21 H 0.260 0.740 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.397 0.603 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.201 0.799 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.306 -22.249 -0.244 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.410 6.410 13 N -0.401 5.401 14 C 0.000 4.000 15 C -0.098 4.098 16 C -0.178 4.178 17 C -0.226 4.226 18 C -0.112 4.112 19 O -0.074 6.074 20 C -0.104 4.104 21 H 0.070 0.930 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.230 0.770 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.166 0.834 32 H 0.218 0.782 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.117 -22.337 -0.059 22.915 hybrid contribution 0.956 0.999 -0.210 1.398 sum 6.072 -21.337 -0.269 22.186 Atomic orbital electron populations 1.70015 1.06058 1.26440 1.50326 1.25038 0.94832 0.99252 0.95352 0.86532 0.79996 0.83840 0.77568 1.19753 1.21033 1.21028 1.21270 0.92962 0.91021 1.51191 0.92551 1.18905 0.93215 0.89415 0.98631 1.21864 1.00695 0.91970 1.02461 1.21569 0.88662 0.85672 0.74433 1.90672 1.14535 1.87673 1.48162 1.46219 1.10025 1.05661 1.78162 1.21204 0.94314 0.82055 1.02379 1.20152 0.96825 0.89448 1.03376 1.20285 1.05499 0.99062 0.92917 1.21794 1.04355 0.96376 1.00077 1.24023 1.04809 1.01473 0.80867 1.84070 1.60944 1.39614 1.22773 1.23923 0.99802 0.86818 0.99883 0.93020 0.95828 0.95823 0.90252 0.90258 0.76967 0.91796 0.91874 0.90431 0.90280 0.83395 0.78185 0.78114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.69 13.29 55.43 0.74 -26.96 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.53 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 11 C 0.51 9.99 7.83 -10.99 -0.09 9.90 16 12 O -0.54 -13.04 15.98 5.55 0.09 -12.95 16 13 N -0.75 -10.51 5.56 -60.29 -0.33 -10.85 16 14 C 0.12 1.59 5.66 -4.04 -0.02 1.57 16 15 C -0.06 -0.55 5.85 -27.88 -0.16 -0.71 16 16 C -0.18 -1.72 5.42 -104.74 -0.57 -2.29 16 17 C -0.21 -1.92 10.87 -39.70 -0.43 -2.36 16 18 C -0.04 -0.37 12.09 29.42 0.36 -0.01 16 19 O -0.18 -1.76 10.65 5.71 0.06 -1.70 16 20 C -0.04 -0.33 12.01 29.42 0.35 0.02 16 21 H 0.26 7.57 8.31 -40.81 -0.34 7.23 16 22 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 25 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 26 H 0.40 4.22 8.47 -40.82 -0.35 3.88 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.20 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 294.27 15.07 4.43 4.43 Total: -1.00 -35.70 294.27 -5.82 -41.52 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.53 Total: -0.61 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.25 Total: -9.66 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.40 Total: -37.80 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.15 Total: -14.65 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -35.70 -5.82 -41.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598203474.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.384 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds