Wall clock time and date at job start Sun Mar 29 2020 22:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34167 * 127.02619 * 2 1 4 4 O 1.34215 * 109.12756 * 179.97438 * 3 2 1 5 5 C 1.33659 * 110.90432 * 359.72630 * 4 3 2 6 6 C 1.36410 * 108.39655 * 0.44682 * 5 4 3 7 7 C 1.47380 * 127.19187 * 179.83490 * 6 5 4 8 8 O 1.21613 * 120.00134 * 179.68673 * 7 6 5 9 9 N 1.34777 * 119.99615 * 359.68363 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72401 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46940 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00213 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00116 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00201 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47136 * 90.00100 * 17 15 13 19 19 H 1.48499 * 109.47548 * 209.99879 * 17 15 13 20 20 H 1.48499 * 109.47078 * 330.00388 * 17 15 13 21 21 H 1.09001 * 109.47196 * 270.02446 * 1 2 3 22 22 H 1.09004 * 109.46949 * 30.02361 * 1 2 3 23 23 H 1.08999 * 109.47310 * 150.02593 * 1 2 3 24 24 H 1.08008 * 125.44000 * 359.97438 * 3 2 1 25 25 H 1.07998 * 125.79979 * 180.28875 * 5 4 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 27 27 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 28 28 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 29 29 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 30 30 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 31 31 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 32 32 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 33 33 H 0.97000 * 120.00572 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0711 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6622 -0.6761 0.0069 6 6 2.3922 -1.1739 0.0006 7 6 1.9912 -2.5921 0.0008 8 8 0.8123 -2.8907 0.0005 9 7 2.9311 -3.5581 0.0013 10 6 2.5325 -4.9678 0.0076 11 6 3.7819 -5.8510 0.0139 12 6 3.3656 -7.3232 0.0211 13 6 4.5961 -8.1932 0.0266 14 1 5.5770 -7.7412 0.0256 15 6 4.4698 -9.5661 0.0331 16 7 3.2755 -10.1166 0.0338 17 14 5.9951 -10.6444 0.0406 18 1 6.3971 -10.9235 1.4427 19 1 5.7006 -11.9237 -0.6537 20 1 7.1004 -9.9435 -0.6610 21 1 -0.3634 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3634 -0.8902 -0.5134 24 1 1.9896 2.1010 -0.0004 25 1 4.5701 -1.2610 0.0131 26 1 3.8714 -3.3199 0.0019 27 1 1.9378 -5.1733 0.8978 28 1 1.9406 -5.1820 -0.8822 29 1 4.3765 -5.6455 -0.8762 30 1 4.3738 -5.6369 0.9038 31 1 2.7712 -7.5285 0.9114 32 1 2.7734 -7.5378 -0.8686 33 1 3.1865 -11.0825 0.0380 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599340976.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:48 Heat of formation + Delta-G solvation = -45.990960 kcal Electronic energy + Delta-G solvation = -15793.833694 eV Core-core repulsion = 13013.522414 eV Total energy + Delta-G solvation = -2780.311281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.70911 -39.20318 -35.45041 -33.92310 -33.37930 -31.62486 -30.31228 -27.36383 -26.78124 -24.00839 -22.48125 -20.77066 -20.55209 -19.73796 -17.99949 -16.42523 -16.37356 -15.92221 -15.38651 -15.17236 -14.75545 -14.45496 -13.77405 -13.47582 -13.28402 -13.14107 -12.63327 -12.29512 -11.86102 -11.74659 -11.62161 -10.91617 -10.75418 -10.60893 -9.96709 -9.88657 -9.66700 -9.41424 -9.13440 -8.89247 -8.76331 -8.38340 -6.02851 -4.06152 1.23767 1.89266 2.75276 3.30096 3.34598 3.36968 3.40038 3.43749 4.35999 4.43357 4.51554 4.90431 5.15651 5.27869 5.32943 5.58962 5.63003 5.76004 5.76622 5.80279 5.89985 6.14195 6.32811 6.46228 6.57699 6.77525 6.81522 6.98092 7.62139 7.68975 7.74605 7.95679 8.35075 8.39246 9.00487 9.58141 11.08439 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.054851 B = 0.003782 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.350643 B = 7402.056412 C = 7881.342689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.133 4.133 3 C -0.051 4.051 4 O -0.174 6.174 5 C 0.018 3.982 6 C -0.229 4.229 7 C 0.579 3.421 8 O -0.537 6.537 9 N -0.722 5.722 10 C 0.117 3.883 11 C -0.121 4.121 12 C 0.023 3.977 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.083 0.917 24 H 0.206 0.794 25 H 0.212 0.788 26 H 0.395 0.605 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.166 21.497 -0.075 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C -0.117 4.117 4 O -0.069 6.069 5 C -0.052 4.052 6 C -0.234 4.234 7 C 0.366 3.634 8 O -0.416 6.416 9 N -0.373 5.373 10 C -0.005 4.005 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.102 0.898 24 H 0.223 0.777 25 H 0.228 0.772 26 H 0.229 0.771 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.886 21.274 -0.084 21.293 hybrid contribution 1.203 -0.728 0.032 1.406 sum 0.317 20.547 -0.052 20.549 Atomic orbital electron populations 1.20242 0.88355 1.03200 1.02593 1.21454 0.97347 0.90449 1.04198 1.23688 0.79748 0.99636 1.08626 1.83772 1.29624 1.22399 1.71104 1.24454 0.98918 0.81066 1.00779 1.21565 0.93330 0.94613 1.13863 1.17291 0.85806 0.83645 0.76651 1.90760 1.17356 1.83323 1.50111 1.46073 1.09046 1.07283 1.74897 1.21675 0.99036 0.77605 1.02175 1.21898 0.94932 0.98191 1.00881 1.19033 0.97013 0.87665 0.97712 1.21200 0.92761 0.91165 1.51006 0.92643 1.25031 0.95916 0.98262 0.95258 1.69963 1.21916 1.10870 1.50506 0.86577 0.83220 0.79985 0.78103 1.20655 1.21200 1.19887 0.91199 0.91836 0.89797 0.77715 0.77179 0.77139 0.91598 0.91588 0.92686 0.92700 0.96233 0.96222 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 10.00 36.01 0.36 -0.57 16 2 C -0.13 -1.54 6.37 -102.50 -0.65 -2.20 16 3 C -0.05 -0.46 11.96 29.30 0.35 -0.11 16 4 O -0.17 -1.70 10.52 7.64 0.08 -1.62 16 5 C 0.02 0.17 11.61 30.07 0.35 0.52 16 6 C -0.23 -2.94 6.31 -103.28 -0.65 -3.59 16 7 C 0.58 9.16 7.81 -12.54 -0.10 9.06 16 8 O -0.54 -10.42 15.41 5.27 0.08 -10.34 16 9 N -0.72 -10.49 5.55 -61.39 -0.34 -10.83 16 10 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 11 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.08 1.10 6.91 -51.93 -0.36 0.74 16 24 H 0.21 1.04 8.06 -52.48 -0.42 0.62 16 25 H 0.21 1.23 7.47 -52.49 -0.39 0.84 16 26 H 0.40 4.42 7.44 -40.82 -0.30 4.11 16 27 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 291.25 15.07 4.39 4.39 Total: -1.00 -33.55 291.25 -5.53 -39.08 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.40 Total: -0.82 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.06 Total: -10.19 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.40 Total: -36.87 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.16 Total: -11.96 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.55 -5.53 -39.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599340976.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.907 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds