Wall clock time and date at job start Sun Mar 29 2020 22:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34167 * 127.02619 * 2 1 4 4 O 1.34215 * 109.12756 * 179.97438 * 3 2 1 5 5 C 1.33659 * 110.90432 * 359.72630 * 4 3 2 6 6 C 1.36410 * 108.39655 * 0.44682 * 5 4 3 7 7 C 1.47380 * 127.19187 * 179.83490 * 6 5 4 8 8 O 1.21613 * 120.00134 * 179.68673 * 7 6 5 9 9 N 1.34777 * 119.99615 * 359.68363 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72401 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46940 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00213 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00116 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00201 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47136 * 90.00100 * 17 15 13 19 19 H 1.48499 * 109.47548 * 209.99879 * 17 15 13 20 20 H 1.48499 * 109.47078 * 330.00388 * 17 15 13 21 21 H 1.09001 * 109.47196 * 270.02446 * 1 2 3 22 22 H 1.09004 * 109.46949 * 30.02361 * 1 2 3 23 23 H 1.08999 * 109.47310 * 150.02593 * 1 2 3 24 24 H 1.08008 * 125.44000 * 359.97438 * 3 2 1 25 25 H 1.07998 * 125.79979 * 180.28875 * 5 4 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 27 27 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 28 28 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 29 29 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 30 30 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 31 31 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 32 32 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 33 33 H 0.97000 * 120.00572 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0711 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6622 -0.6761 0.0069 6 6 2.3922 -1.1739 0.0006 7 6 1.9912 -2.5921 0.0008 8 8 0.8123 -2.8907 0.0005 9 7 2.9311 -3.5581 0.0013 10 6 2.5325 -4.9678 0.0076 11 6 3.7819 -5.8510 0.0139 12 6 3.3656 -7.3232 0.0211 13 6 4.5961 -8.1932 0.0266 14 1 5.5770 -7.7412 0.0256 15 6 4.4698 -9.5661 0.0331 16 7 3.2755 -10.1166 0.0338 17 14 5.9951 -10.6444 0.0406 18 1 6.3971 -10.9235 1.4427 19 1 5.7006 -11.9237 -0.6537 20 1 7.1004 -9.9435 -0.6610 21 1 -0.3634 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3634 -0.8902 -0.5134 24 1 1.9896 2.1010 -0.0004 25 1 4.5701 -1.2610 0.0131 26 1 3.8714 -3.3199 0.0019 27 1 1.9378 -5.1733 0.8978 28 1 1.9406 -5.1820 -0.8822 29 1 4.3765 -5.6455 -0.8762 30 1 4.3738 -5.6369 0.9038 31 1 2.7712 -7.5285 0.9114 32 1 2.7734 -7.5378 -0.8686 33 1 3.1865 -11.0825 0.0380 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599340976.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:48 Heat of formation + Delta-G solvation = -69.206923 kcal Electronic energy + Delta-G solvation = -15794.840414 eV Core-core repulsion = 13013.522414 eV Total energy + Delta-G solvation = -2781.318001 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.49327 -40.47323 -36.99493 -35.23472 -34.77401 -33.24991 -31.44410 -28.56334 -28.13135 -25.54538 -23.86561 -22.36736 -21.37234 -20.93472 -18.99271 -18.47706 -17.19998 -17.04190 -16.63760 -16.57159 -16.39923 -15.62554 -15.26732 -14.52209 -14.32210 -14.17129 -13.98877 -13.75362 -13.52432 -13.41566 -12.75100 -12.56116 -12.46126 -12.36342 -11.68222 -11.61921 -11.25818 -10.98716 -10.61411 -10.55381 -10.10842 -9.59762 -8.19330 -6.31034 0.36649 1.08843 1.42342 1.43719 1.54681 2.01345 2.19956 2.30902 2.43062 3.14578 3.62086 3.67962 4.04252 4.20047 4.20091 4.36540 4.51634 4.53978 4.79403 4.92903 4.93105 4.96720 5.06171 5.07975 5.16729 5.38984 5.51719 5.52848 5.70209 5.84064 6.00565 6.21892 6.55196 6.86688 7.20027 7.38764 8.92884 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.054851 B = 0.003782 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.350643 B = 7402.056412 C = 7881.342689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.169 4.169 3 C -0.029 4.029 4 O -0.172 6.172 5 C 0.048 3.952 6 C -0.271 4.271 7 C 0.577 3.423 8 O -0.585 6.585 9 N -0.709 5.709 10 C 0.131 3.869 11 C -0.101 4.101 12 C 0.022 3.978 13 C -0.541 4.541 14 H 0.068 0.932 15 C -0.004 4.004 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.259 1.259 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.049 0.951 24 H 0.247 0.753 25 H 0.249 0.751 26 H 0.414 0.586 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.070 0.930 31 H -0.008 1.008 32 H -0.008 1.008 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 23.497 -0.072 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.171 4.171 3 C -0.095 4.095 4 O -0.066 6.066 5 C -0.023 4.023 6 C -0.275 4.275 7 C 0.366 3.634 8 O -0.467 6.467 9 N -0.361 5.361 10 C 0.007 3.993 11 C -0.139 4.139 12 C -0.016 4.016 13 C -0.579 4.579 14 H 0.086 0.914 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.183 1.183 21 H 0.086 0.914 22 H 0.110 0.890 23 H 0.069 0.931 24 H 0.263 0.737 25 H 0.265 0.735 26 H 0.252 0.748 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.834 23.312 -0.080 23.384 hybrid contribution 0.349 -1.288 0.032 1.335 sum 2.183 22.024 -0.049 22.132 Atomic orbital electron populations 1.20179 0.88540 1.02911 1.02386 1.21705 0.97832 0.91095 1.06449 1.24343 0.78783 1.00577 1.05751 1.83832 1.29984 1.22267 1.70521 1.25060 0.98864 0.81113 0.97235 1.21446 0.95418 0.93027 1.17648 1.17774 0.85154 0.85032 0.75394 1.90735 1.19364 1.84214 1.52349 1.45786 1.10104 1.05651 1.74587 1.21257 0.97921 0.79401 1.00715 1.21601 0.95577 0.94354 1.02346 1.18955 0.95869 0.91665 0.95063 1.21687 0.93852 0.91896 1.50425 0.91361 1.26041 0.99280 1.00089 0.94783 1.70114 1.24532 1.11277 1.51714 0.85399 0.79188 0.77707 0.78454 1.19831 1.21140 1.18292 0.91436 0.88979 0.93148 0.73736 0.73485 0.74846 0.93235 0.93225 0.91101 0.91093 0.99003 0.98995 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.00 71.24 0.71 -1.07 16 2 C -0.17 -3.71 6.37 -18.49 -0.12 -3.83 16 3 C -0.03 -0.43 11.96 66.89 0.80 0.37 16 4 O -0.17 -2.69 10.52 4.41 0.05 -2.65 16 5 C 0.05 0.77 11.61 67.39 0.78 1.55 16 6 C -0.27 -6.62 6.31 -18.99 -0.12 -6.74 16 7 C 0.58 18.39 7.81 86.65 0.68 19.07 16 8 O -0.58 -23.85 15.41 -4.07 -0.06 -23.91 16 9 N -0.71 -20.06 5.55 -466.40 -2.59 -22.65 16 10 C 0.13 4.69 5.67 86.38 0.49 5.18 16 11 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 12 C 0.02 1.15 4.97 29.85 0.15 1.30 16 13 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 14 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 15 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 16 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 17 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 22 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.05 1.41 6.91 -2.39 -0.02 1.39 16 24 H 0.25 1.34 8.06 -2.91 -0.02 1.32 16 25 H 0.25 1.75 7.47 -2.91 -0.02 1.73 16 26 H 0.41 8.24 7.44 -92.71 -0.69 7.55 16 27 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 30 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H -0.01 -0.48 8.14 -2.38 -0.02 -0.49 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -75.47 291.25 4.36 -71.11 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 0.42 Total: 6.91 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 4.23 Total: -17.40 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -2.30 Total: -79.67 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.02 Total: -26.56 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -75.47 4.36 -71.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599340976.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.907 kcal (2) G-P(sol) polarization free energy of solvation -75.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds