Wall clock time and date at job start Sun Mar 29 2020 22:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.46785 * 90.00046 * 6 5 4 8 8 C 1.34776 * 119.99578 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00361 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00008 * 179.97438 * 8 7 6 11 11 C 1.53001 * 109.47519 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47519 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99737 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00177 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99744 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99790 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47632 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47167 * 120.00042 * 16 14 12 19 19 H 1.48497 * 109.46813 * 239.99444 * 16 14 12 20 20 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 21 21 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 22 22 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 23 23 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 24 24 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 25 25 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 27 27 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 28 28 H 0.96995 * 120.00591 * 359.97438 * 7 6 5 29 29 H 1.08992 * 109.47267 * 299.99995 * 10 8 7 30 30 H 1.09003 * 109.47291 * 59.99818 * 10 8 7 31 31 H 1.09005 * 109.46783 * 300.00547 * 11 10 8 32 32 H 1.09003 * 109.46832 * 59.99728 * 11 10 8 33 33 H 0.97004 * 119.99566 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 7 5.1498 -1.9347 1.4000 8 6 6.1946 -2.7477 1.6527 9 8 6.8206 -3.2339 0.7347 10 6 6.5852 -3.0525 3.0759 11 6 7.7925 -3.9924 3.0834 12 6 8.1827 -4.2978 4.5066 13 1 7.6251 -3.8651 5.3240 14 6 9.2515 -5.1295 4.7651 15 7 9.9308 -5.6560 3.7696 16 14 9.7346 -5.5085 6.5292 17 1 8.8190 -4.7973 7.4570 18 1 9.6404 -6.9716 6.7649 19 1 11.1291 -5.0575 6.7683 20 8 2.2923 -1.0895 0.0044 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.9666 2.1203 -0.0045 25 1 4.5212 1.2433 0.0076 26 1 4.5127 -2.5646 -0.4964 27 1 5.6061 -1.1601 -0.4949 28 1 4.6494 -1.5456 2.1342 29 1 6.8427 -2.1257 3.5884 30 1 5.7498 -3.5306 3.5875 31 1 7.5345 -4.9192 2.5708 32 1 8.6280 -3.5147 2.5716 33 1 10.6826 -6.2414 3.9515 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601857298.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:16 Heat of formation + Delta-G solvation = -40.416301 kcal Electronic energy + Delta-G solvation = -15729.709912 eV Core-core repulsion = 12949.640366 eV Total energy + Delta-G solvation = -2780.069546 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.80592 -39.11429 -34.90606 -33.43843 -33.39048 -32.09714 -30.96907 -28.57005 -25.77049 -24.23847 -21.99207 -21.52981 -20.42912 -19.69749 -17.27289 -16.68801 -16.36343 -15.55462 -15.33607 -15.19673 -14.39295 -14.26868 -13.79282 -13.31613 -13.20327 -13.03372 -12.99909 -12.51351 -12.17806 -12.12649 -11.76952 -11.14877 -10.93425 -10.57212 -10.11389 -9.95085 -9.66999 -9.27492 -9.05853 -8.87343 -8.49862 -8.31130 -5.95072 -3.99322 1.40053 2.34591 2.63622 3.22639 3.33624 3.40578 3.43998 3.69391 4.35099 4.48882 4.66034 4.82146 4.99477 5.11225 5.28928 5.34412 5.39989 5.41336 5.60381 5.74926 5.79767 5.93089 6.23664 6.25475 6.30796 6.59919 6.89845 6.96759 7.75867 7.83552 7.87422 8.08301 8.39629 8.73650 9.09360 9.64208 11.15941 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.054909 B = 0.003700 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.811949 B = 7565.978170 C = 7795.926678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.010 4.010 3 C -0.216 4.216 4 C -0.186 4.186 5 C -0.030 4.030 6 C 0.201 3.799 7 N -0.742 5.742 8 C 0.512 3.488 9 O -0.533 6.533 10 C -0.129 4.129 11 C 0.036 3.964 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 O -0.170 6.170 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.148 0.852 25 H 0.151 0.849 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.400 0.600 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.035 13.609 -6.705 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.235 4.235 4 C -0.206 4.206 5 C -0.080 4.080 6 C 0.078 3.922 7 N -0.398 5.398 8 C 0.301 3.699 9 O -0.408 6.408 10 C -0.169 4.169 11 C -0.001 4.001 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 O -0.066 6.066 21 H 0.099 0.901 22 H 0.096 0.904 23 H 0.107 0.893 24 H 0.166 0.834 25 H 0.169 0.831 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.234 0.766 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.506 12.812 -7.428 22.930 hybrid contribution 0.110 0.244 1.232 1.261 sum -17.396 13.056 -6.196 22.616 Atomic orbital electron populations 1.20320 0.85076 1.04142 1.03542 1.22518 0.94097 0.84237 1.05226 1.21589 0.92658 0.99440 1.09799 1.21683 0.98392 0.93780 1.06739 1.22402 0.83002 0.94543 1.08024 1.19530 0.89821 0.97035 0.85827 1.46318 1.34584 1.51851 1.07036 1.21623 0.78221 0.76599 0.93498 1.90679 1.52271 1.50610 1.47247 1.21876 1.02634 1.02624 0.89755 1.18918 0.90609 0.93795 0.96827 1.21262 1.14166 1.28816 0.92223 0.92532 1.25032 0.96393 0.95981 0.97045 1.70012 1.20123 1.32059 1.30640 0.86528 0.78351 0.78054 0.84984 1.19748 1.21023 1.21029 1.83994 1.16327 1.35051 1.71264 0.90068 0.90430 0.89310 0.83400 0.83138 0.90098 0.88572 0.76583 0.90106 0.90135 0.95767 0.95748 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.42 36.00 0.38 -0.07 16 2 C -0.01 -0.10 7.32 -35.63 -0.26 -0.36 16 3 C -0.22 -2.10 10.81 -39.71 -0.43 -2.53 16 4 C -0.19 -2.01 10.81 -39.70 -0.43 -2.44 16 5 C -0.03 -0.36 6.69 -35.62 -0.24 -0.60 16 6 C 0.20 2.67 6.20 -5.19 -0.03 2.63 16 7 N -0.74 -10.89 5.55 -61.47 -0.34 -11.23 16 8 C 0.51 9.95 7.83 -10.99 -0.09 9.86 16 9 O -0.53 -12.59 15.98 5.56 0.09 -12.50 16 10 C -0.13 -2.64 5.64 -27.88 -0.16 -2.80 16 11 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 12 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.58 13.29 55.43 0.74 -26.84 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 O -0.17 -2.11 10.65 5.72 0.06 -2.05 16 21 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 25 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.40 4.93 8.46 -40.82 -0.35 4.59 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 294.69 15.07 4.44 4.44 Total: -1.00 -34.48 294.69 -6.36 -40.83 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.53 Total: -0.19 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -1.79 Total: -9.22 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.40 Total: -38.08 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.15 Total: -14.55 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.48 -6.36 -40.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601857298.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.418 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds