Wall clock time and date at job start Sun Mar 29 2020 22:09:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.34515 * 125.79319 * 2 1
4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1
5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2
6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3
7 7 N 1.46498 * 109.46785 * 90.00046 * 6 5 4
8 8 C 1.34776 * 119.99578 * 180.02562 * 7 6 5
9 9 O 1.21280 * 120.00361 * 359.97438 * 8 7 6
10 10 C 1.50699 * 120.00008 * 179.97438 * 8 7 6
11 11 C 1.53001 * 109.47519 * 179.97438 * 10 8 7
12 12 C 1.50699 * 109.47519 * 180.02562 * 11 10 8
13 13 H 1.07999 * 119.99737 * 0.02562 * 12 11 10
14 14 C 1.37878 * 120.00177 * 180.02562 * 12 11 10
15 15 N 1.31513 * 119.99744 * 0.02562 * 14 12 11
16 16 Si 1.86796 * 119.99790 * 180.02562 * 14 12 11
17 17 H 1.48495 * 109.47632 * 359.97438 * 16 14 12
18 18 H 1.48500 * 109.47167 * 120.00042 * 16 14 12
19 19 H 1.48497 * 109.46813 * 239.99444 * 16 14 12
20 20 O 1.34298 * 108.42070 * 0.02562 * 5 4 3
21 21 H 1.09007 * 109.47122 * 90.00090 * 1 2 3
22 22 H 1.09004 * 109.47299 * 210.00077 * 1 2 3
23 23 H 1.09003 * 109.47154 * 330.00412 * 1 2 3
24 24 H 1.07995 * 126.57546 * 359.70154 * 3 2 1
25 25 H 1.08003 * 126.57866 * 179.97438 * 4 3 2
26 26 H 1.09000 * 109.46884 * 209.99804 * 6 5 4
27 27 H 1.09003 * 109.47129 * 329.99652 * 6 5 4
28 28 H 0.96995 * 120.00591 * 359.97438 * 7 6 5
29 29 H 1.08992 * 109.47267 * 299.99995 * 10 8 7
30 30 H 1.09003 * 109.47291 * 59.99818 * 10 8 7
31 31 H 1.09005 * 109.46783 * 300.00547 * 11 10 8
32 32 H 1.09003 * 109.46832 * 59.99728 * 11 10 8
33 33 H 0.97004 * 119.99566 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2937 1.0911 0.0000
4 6 3.6308 0.6320 0.0063
5 6 3.5813 -0.7123 0.0091
6 6 4.7705 -1.6380 0.0164
7 7 5.1498 -1.9347 1.4000
8 6 6.1946 -2.7477 1.6527
9 8 6.8206 -3.2339 0.7347
10 6 6.5852 -3.0525 3.0759
11 6 7.7925 -3.9924 3.0834
12 6 8.1827 -4.2978 4.5066
13 1 7.6251 -3.8651 5.3240
14 6 9.2515 -5.1295 4.7651
15 7 9.9308 -5.6560 3.7696
16 14 9.7346 -5.5085 6.5292
17 1 8.8190 -4.7973 7.4570
18 1 9.6404 -6.9716 6.7649
19 1 11.1291 -5.0575 6.7683
20 8 2.2923 -1.0895 0.0044
21 1 -0.3634 0.0000 -1.0277
22 1 -0.3634 -0.8900 0.5139
23 1 -0.3633 0.8900 0.5138
24 1 1.9666 2.1203 -0.0045
25 1 4.5212 1.2433 0.0076
26 1 4.5127 -2.5646 -0.4964
27 1 5.6061 -1.1601 -0.4949
28 1 4.6494 -1.5456 2.1342
29 1 6.8427 -2.1257 3.5884
30 1 5.7498 -3.5306 3.5875
31 1 7.5345 -4.9192 2.5708
32 1 8.6280 -3.5147 2.5716
33 1 10.6826 -6.2414 3.9515
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601857298.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:09:16
Heat of formation + Delta-G solvation = -40.416301 kcal
Electronic energy + Delta-G solvation = -15729.709912 eV
Core-core repulsion = 12949.640366 eV
Total energy + Delta-G solvation = -2780.069546 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 237.115 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-42.80592 -39.11429 -34.90606 -33.43843 -33.39048 -32.09714 -30.96907 -28.57005
-25.77049 -24.23847 -21.99207 -21.52981 -20.42912 -19.69749 -17.27289 -16.68801
-16.36343 -15.55462 -15.33607 -15.19673 -14.39295 -14.26868 -13.79282 -13.31613
-13.20327 -13.03372 -12.99909 -12.51351 -12.17806 -12.12649 -11.76952 -11.14877
-10.93425 -10.57212 -10.11389 -9.95085 -9.66999 -9.27492 -9.05853 -8.87343
-8.49862 -8.31130 -5.95072 -3.99322 1.40053 2.34591 2.63622 3.22639
3.33624 3.40578 3.43998 3.69391 4.35099 4.48882 4.66034 4.82146
4.99477 5.11225 5.28928 5.34412 5.39989 5.41336 5.60381 5.74926
5.79767 5.93089 6.23664 6.25475 6.30796 6.59919 6.89845 6.96759
7.75867 7.83552 7.87422 8.08301 8.39629 8.73650 9.09360 9.64208
11.15941
Molecular weight = 237.12amu
Principal moments of inertia in cm(-1)
A = 0.054909 B = 0.003700 C = 0.003591
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 509.811949 B = 7565.978170 C = 7795.926678
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C -0.010 4.010
3 C -0.216 4.216
4 C -0.186 4.186
5 C -0.030 4.030
6 C 0.201 3.799
7 N -0.742 5.742
8 C 0.512 3.488
9 O -0.533 6.533
10 C -0.129 4.129
11 C 0.036 3.964
12 C -0.526 4.526
13 H 0.056 0.944
14 C 0.057 3.943
15 N -0.890 5.890
16 Si 0.893 3.107
17 H -0.273 1.273
18 H -0.284 1.284
19 H -0.284 1.284
20 O -0.170 6.170
21 H 0.081 0.919
22 H 0.077 0.923
23 H 0.088 0.912
24 H 0.148 0.852
25 H 0.151 0.849
26 H 0.081 0.919
27 H 0.096 0.904
28 H 0.400 0.600
29 H 0.081 0.919
30 H 0.080 0.920
31 H 0.024 0.976
32 H 0.024 0.976
33 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.035 13.609 -6.705 23.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.061 4.061
3 C -0.235 4.235
4 C -0.206 4.206
5 C -0.080 4.080
6 C 0.078 3.922
7 N -0.398 5.398
8 C 0.301 3.699
9 O -0.408 6.408
10 C -0.169 4.169
11 C -0.001 4.001
12 C -0.565 4.565
13 H 0.075 0.925
14 C -0.145 4.145
15 N -0.528 5.528
16 Si 0.721 3.279
17 H -0.197 1.197
18 H -0.210 1.210
19 H -0.210 1.210
20 O -0.066 6.066
21 H 0.099 0.901
22 H 0.096 0.904
23 H 0.107 0.893
24 H 0.166 0.834
25 H 0.169 0.831
26 H 0.099 0.901
27 H 0.114 0.886
28 H 0.234 0.766
29 H 0.099 0.901
30 H 0.099 0.901
31 H 0.042 0.958
32 H 0.043 0.957
33 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -17.506 12.812 -7.428 22.930
hybrid contribution 0.110 0.244 1.232 1.261
sum -17.396 13.056 -6.196 22.616
Atomic orbital electron populations
1.20320 0.85076 1.04142 1.03542 1.22518 0.94097 0.84237 1.05226
1.21589 0.92658 0.99440 1.09799 1.21683 0.98392 0.93780 1.06739
1.22402 0.83002 0.94543 1.08024 1.19530 0.89821 0.97035 0.85827
1.46318 1.34584 1.51851 1.07036 1.21623 0.78221 0.76599 0.93498
1.90679 1.52271 1.50610 1.47247 1.21876 1.02634 1.02624 0.89755
1.18918 0.90609 0.93795 0.96827 1.21262 1.14166 1.28816 0.92223
0.92532 1.25032 0.96393 0.95981 0.97045 1.70012 1.20123 1.32059
1.30640 0.86528 0.78351 0.78054 0.84984 1.19748 1.21023 1.21029
1.83994 1.16327 1.35051 1.71264 0.90068 0.90430 0.89310 0.83400
0.83138 0.90098 0.88572 0.76583 0.90106 0.90135 0.95767 0.95748
0.93010
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.45 10.42 36.00 0.38 -0.07 16
2 C -0.01 -0.10 7.32 -35.63 -0.26 -0.36 16
3 C -0.22 -2.10 10.81 -39.71 -0.43 -2.53 16
4 C -0.19 -2.01 10.81 -39.70 -0.43 -2.44 16
5 C -0.03 -0.36 6.69 -35.62 -0.24 -0.60 16
6 C 0.20 2.67 6.20 -5.19 -0.03 2.63 16
7 N -0.74 -10.89 5.55 -61.47 -0.34 -11.23 16
8 C 0.51 9.95 7.83 -10.99 -0.09 9.86 16
9 O -0.53 -12.59 15.98 5.56 0.09 -12.50 16
10 C -0.13 -2.64 5.64 -27.88 -0.16 -2.80 16
11 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16
12 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16
13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16
14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
15 N -0.89 -27.58 13.29 55.43 0.74 -26.84 16
16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16
17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16
19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
20 O -0.17 -2.11 10.65 5.72 0.06 -2.05 16
21 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
22 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
23 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16
24 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16
25 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16
26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16
27 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16
28 H 0.40 4.93 8.46 -40.82 -0.35 4.59 16
29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16
30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16
31 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16
32 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16
33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
LS Contribution 294.69 15.07 4.44 4.44
Total: -1.00 -34.48 294.69 -6.36 -40.83
By element:
Atomic # 1 Polarization: 4.35 SS G_CDS: -4.53 Total: -0.19 kcal
Atomic # 6 Polarization: -7.44 SS G_CDS: -1.79 Total: -9.22 kcal
Atomic # 7 Polarization: -38.47 SS G_CDS: 0.40 Total: -38.08 kcal
Atomic # 8 Polarization: -14.70 SS G_CDS: 0.15 Total: -14.55 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -34.48 -6.36 -40.83 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601857298.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.418 kcal
(2) G-P(sol) polarization free energy of solvation -34.479 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.061 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.416 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds