Wall clock time and date at job start Sun Mar 29 2020 22:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.46785 * 90.00046 * 6 5 4 8 8 C 1.34776 * 119.99578 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00361 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00008 * 179.97438 * 8 7 6 11 11 C 1.53001 * 109.47519 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47519 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99737 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00177 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99744 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99790 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47632 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47167 * 120.00042 * 16 14 12 19 19 H 1.48497 * 109.46813 * 239.99444 * 16 14 12 20 20 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 21 21 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 22 22 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 23 23 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 24 24 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 25 25 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 27 27 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 28 28 H 0.96995 * 120.00591 * 359.97438 * 7 6 5 29 29 H 1.08992 * 109.47267 * 299.99995 * 10 8 7 30 30 H 1.09003 * 109.47291 * 59.99818 * 10 8 7 31 31 H 1.09005 * 109.46783 * 300.00547 * 11 10 8 32 32 H 1.09003 * 109.46832 * 59.99728 * 11 10 8 33 33 H 0.97004 * 119.99566 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 7 5.1498 -1.9347 1.4000 8 6 6.1946 -2.7477 1.6527 9 8 6.8206 -3.2339 0.7347 10 6 6.5852 -3.0525 3.0759 11 6 7.7925 -3.9924 3.0834 12 6 8.1827 -4.2978 4.5066 13 1 7.6251 -3.8651 5.3240 14 6 9.2515 -5.1295 4.7651 15 7 9.9308 -5.6560 3.7696 16 14 9.7346 -5.5085 6.5292 17 1 8.8190 -4.7973 7.4570 18 1 9.6404 -6.9716 6.7649 19 1 11.1291 -5.0575 6.7683 20 8 2.2923 -1.0895 0.0044 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.9666 2.1203 -0.0045 25 1 4.5212 1.2433 0.0076 26 1 4.5127 -2.5646 -0.4964 27 1 5.6061 -1.1601 -0.4949 28 1 4.6494 -1.5456 2.1342 29 1 6.8427 -2.1257 3.5884 30 1 5.7498 -3.5306 3.5875 31 1 7.5345 -4.9192 2.5708 32 1 8.6280 -3.5147 2.5716 33 1 10.6826 -6.2414 3.9515 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601857298.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:15 Heat of formation + Delta-G solvation = -64.295424 kcal Electronic energy + Delta-G solvation = -15730.745388 eV Core-core repulsion = 12949.640366 eV Total energy + Delta-G solvation = -2781.105022 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.63084 -40.67588 -36.24651 -35.53276 -34.16625 -33.26321 -32.63393 -29.67430 -27.54432 -25.35397 -23.45250 -22.76196 -21.42946 -21.08816 -18.91293 -18.03468 -17.58301 -16.99836 -16.69676 -16.53125 -16.28987 -15.29696 -14.98790 -14.60944 -14.18731 -14.09647 -13.79142 -13.76152 -13.65114 -13.26442 -13.19942 -12.83777 -12.62005 -12.43931 -11.92565 -11.64096 -11.28713 -11.00645 -10.79270 -10.57492 -10.20890 -9.35027 -8.17587 -6.31445 0.54845 1.42935 1.44328 1.55345 1.57809 1.65909 1.83053 2.37105 2.49178 3.15551 3.52960 3.93555 4.01196 4.08326 4.23227 4.44809 4.55510 4.56362 4.60348 4.72184 4.81741 4.87169 5.05286 5.07134 5.21954 5.30689 5.51270 5.58917 5.63960 5.86189 6.16071 6.18266 6.50584 6.87066 7.25742 7.38754 8.95312 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.054909 B = 0.003700 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.811949 B = 7565.978170 C = 7795.926678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.013 4.013 3 C -0.225 4.225 4 C -0.179 4.179 5 C -0.054 4.054 6 C 0.204 3.796 7 N -0.718 5.718 8 C 0.515 3.485 9 O -0.584 6.584 10 C -0.119 4.119 11 C 0.041 3.959 12 C -0.542 4.542 13 H 0.076 0.924 14 C -0.008 4.008 15 N -0.938 5.938 16 Si 0.975 3.025 17 H -0.253 1.253 18 H -0.281 1.281 19 H -0.280 1.280 20 O -0.191 6.191 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.111 0.889 24 H 0.174 0.826 25 H 0.164 0.836 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.415 0.585 29 H 0.107 0.893 30 H 0.104 0.896 31 H -0.017 1.017 32 H -0.015 1.015 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.977 15.398 -5.095 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.063 4.063 3 C -0.243 4.243 4 C -0.199 4.199 5 C -0.103 4.103 6 C 0.081 3.919 7 N -0.373 5.373 8 C 0.304 3.696 9 O -0.464 6.464 10 C -0.158 4.158 11 C 0.003 3.997 12 C -0.580 4.580 13 H 0.094 0.906 14 C -0.205 4.205 15 N -0.578 5.578 16 Si 0.799 3.201 17 H -0.176 1.176 18 H -0.207 1.207 19 H -0.206 1.206 20 O -0.089 6.089 21 H 0.113 0.887 22 H 0.098 0.902 23 H 0.130 0.870 24 H 0.191 0.809 25 H 0.181 0.819 26 H 0.089 0.911 27 H 0.118 0.882 28 H 0.252 0.748 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.002 0.998 32 H 0.003 0.997 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.507 14.650 -5.801 25.076 hybrid contribution 0.616 -0.247 0.658 0.934 sum -18.891 14.403 -5.143 24.306 Atomic orbital electron populations 1.20534 0.82415 1.05362 1.04798 1.23346 0.95649 0.83697 1.03600 1.21940 0.91986 1.00691 1.09718 1.21972 0.99616 0.93337 1.04992 1.22099 0.82736 0.94637 1.10846 1.19484 0.90878 0.97090 0.84433 1.46024 1.32775 1.49875 1.08584 1.21355 0.78867 0.76875 0.92485 1.90666 1.54390 1.52973 1.48352 1.21647 1.00570 1.02384 0.91229 1.18711 0.92131 0.93178 0.95673 1.21747 1.14412 1.28746 0.93121 0.90604 1.26145 0.96385 0.95720 1.02282 1.70186 1.20889 1.33007 1.33683 0.85259 0.78212 0.77928 0.78749 1.17628 1.20659 1.20608 1.83976 1.16595 1.36443 1.71851 0.88686 0.90247 0.87028 0.80887 0.81871 0.91135 0.88215 0.74811 0.87508 0.87805 0.99849 0.99669 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.42 71.23 0.74 0.05 16 2 C -0.01 -0.22 7.32 24.83 0.18 -0.04 16 3 C -0.22 -3.78 10.81 22.19 0.24 -3.54 16 4 C -0.18 -3.53 10.81 22.19 0.24 -3.29 16 5 C -0.05 -1.24 6.69 24.84 0.17 -1.08 16 6 C 0.20 5.38 6.20 85.64 0.53 5.91 16 7 N -0.72 -20.50 5.55 -466.78 -2.59 -23.09 16 8 C 0.52 20.19 7.83 87.66 0.69 20.87 16 9 O -0.58 -28.76 15.98 -3.03 -0.05 -28.81 16 10 C -0.12 -4.80 5.64 29.85 0.17 -4.64 16 11 C 0.04 2.28 4.26 29.85 0.13 2.41 16 12 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 13 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 14 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 15 N -0.94 -59.82 13.29 21.45 0.28 -59.54 16 16 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 17 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 O -0.19 -4.54 10.65 -2.45 -0.03 -4.56 16 21 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 22 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 25 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.42 9.44 8.46 -92.71 -0.78 8.66 16 29 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 30 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 31 H -0.02 -1.07 8.10 -2.38 -0.02 -1.09 16 32 H -0.02 -0.95 8.10 -2.39 -0.02 -0.97 16 33 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 Total: -1.00 -77.23 294.69 3.75 -73.49 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.32 Total: 10.13 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 3.78 Total: -14.19 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -2.30 Total: -82.62 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.07 Total: -33.37 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -77.23 3.75 -73.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601857298.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.190 kcal (2) G-P(sol) polarization free energy of solvation -77.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds