Wall clock time and date at job start Sun Mar 29 2020 21:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.58110 * 2 1 4 4 C 1.53183 * 109.59106 * 120.43073 * 2 1 3 5 5 C 1.53046 * 109.31602 * 174.42279 * 4 2 1 6 6 C 1.53035 * 109.53611 * 298.63444 * 5 4 2 7 7 H 1.09000 * 109.50139 * 301.37781 * 6 5 4 8 8 C 1.52998 * 109.49936 * 181.31309 * 6 5 4 9 9 F 1.39907 * 109.46860 * 59.99848 * 8 6 5 10 10 F 1.39899 * 109.47534 * 180.02562 * 8 6 5 11 11 F 1.39903 * 109.47088 * 300.00195 * 8 6 5 12 12 C 1.52769 * 109.38266 * 61.23869 * 6 5 4 13 13 N 1.46921 * 109.00793 * 305.58716 * 12 6 5 14 14 C 1.36939 * 120.63049 * 233.58473 * 13 12 6 15 15 H 1.08000 * 120.00136 * 151.23275 * 14 13 12 16 16 C 1.38808 * 120.00232 * 331.23328 * 14 13 12 17 17 N 1.31614 * 120.00511 * 160.27182 * 16 14 13 18 18 Si 1.86804 * 119.99727 * 340.55055 * 16 14 13 19 19 H 1.48493 * 109.47433 * 94.49886 * 18 16 14 20 20 H 1.48503 * 109.46811 * 214.49988 * 18 16 14 21 21 H 1.48502 * 109.47078 * 334.49346 * 18 16 14 22 22 H 1.08997 * 109.46715 * 180.28649 * 1 2 3 23 23 H 1.09000 * 109.46741 * 300.27578 * 1 2 3 24 24 H 1.08991 * 109.47535 * 60.28118 * 1 2 3 25 25 H 1.09003 * 109.49928 * 294.37050 * 4 2 1 26 26 H 1.09003 * 109.50113 * 54.46935 * 4 2 1 27 27 H 1.09000 * 109.45706 * 58.65118 * 5 4 2 28 28 H 1.08994 * 109.45960 * 178.61238 * 5 4 2 29 29 H 1.08997 * 109.50732 * 185.70377 * 12 6 5 30 30 H 1.09000 * 109.42881 * 65.42466 * 12 6 5 31 31 H 0.96994 * 120.00623 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7310 1.2443 5 6 3.5676 -0.8494 1.1689 6 6 3.9570 -1.6655 -0.0658 7 1 3.4989 -2.6529 -0.0086 8 6 5.4790 -1.8112 -0.1225 9 9 5.9280 -2.4658 1.0295 10 9 5.8344 -2.5568 -1.2517 11 9 6.0663 -0.5436 -0.1975 12 6 3.4644 -0.9500 -1.3225 13 7 2.0226 -0.6979 -1.1955 14 6 1.1536 -1.1106 -2.1700 15 1 0.1337 -1.3576 -1.9148 16 6 1.5836 -1.2116 -3.4860 17 7 0.9134 -1.9530 -4.3423 18 14 3.1181 -0.3013 -4.0395 19 1 4.2911 -1.2072 -3.9481 20 1 2.9474 0.1474 -5.4448 21 1 3.3353 0.8797 -3.1658 22 1 -0.3632 -1.0276 0.0051 23 1 -0.3633 0.5181 0.8875 24 1 -0.3634 0.5094 -0.8924 25 1 1.7662 -0.1696 2.1366 26 1 1.6031 -1.7270 1.2890 27 1 4.0062 0.1460 1.0993 28 1 3.9379 -1.3474 2.0649 29 1 3.6503 -1.5768 -2.1946 30 1 3.9928 -0.0029 -1.4311 31 1 1.2136 -2.0233 -5.2619 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611554440.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:09 Heat of formation + Delta-G solvation = -160.990637 kcal Electronic energy + Delta-G solvation = -18365.953767 eV Core-core repulsion = 15038.798985 eV Total energy + Delta-G solvation = -3327.154781 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -51.15646 -48.64418 -48.60991 -39.88569 -35.27535 -34.21373 -32.64621 -29.09950 -27.27205 -25.53004 -24.28607 -22.22482 -21.07933 -19.60574 -19.31284 -18.68068 -18.19322 -17.03956 -16.40129 -15.82848 -15.64555 -15.23157 -15.14678 -15.04308 -14.81347 -14.78426 -14.71136 -14.51587 -14.15675 -13.53478 -13.34824 -12.91640 -12.66560 -12.51601 -12.24022 -12.00373 -11.76662 -11.72340 -11.40826 -11.26487 -10.71187 -8.95490 -8.16841 -5.50078 1.27397 1.37688 1.43920 1.72273 2.39234 2.67742 2.95036 3.04349 3.18666 3.31605 3.78615 3.89549 4.05661 4.19591 4.31650 4.49305 4.64429 4.73632 4.81102 4.88021 4.99369 5.05818 5.09520 5.22693 5.50445 5.61024 5.88632 6.18928 6.88663 7.60778 8.00635 9.02230 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.022598 B = 0.012883 C = 0.009347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.759308 B = 2172.906414 C = 2994.955283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.154 3.846 3 H 0.042 0.958 4 C -0.117 4.117 5 C -0.105 4.105 6 C -0.146 4.146 7 H 0.114 0.886 8 C 0.457 3.543 9 F -0.178 7.178 10 F -0.195 7.195 11 F -0.185 7.185 12 C 0.128 3.872 13 N -0.609 5.609 14 C -0.238 4.238 15 H 0.074 0.926 16 C -0.028 4.028 17 N -0.953 5.953 18 Si 0.920 3.080 19 H -0.283 1.283 20 H -0.309 1.309 21 H -0.258 1.258 22 H 0.043 0.957 23 H 0.082 0.918 24 H 0.038 0.962 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 2.838 13.296 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.050 3.950 3 H 0.059 0.941 4 C -0.156 4.156 5 C -0.143 4.143 6 C -0.167 4.167 7 H 0.132 0.868 8 C 0.402 3.598 9 F -0.160 7.160 10 F -0.177 7.177 11 F -0.167 7.167 12 C 0.002 3.998 13 N -0.333 5.333 14 C -0.367 4.367 15 H 0.092 0.908 16 C -0.223 4.223 17 N -0.599 5.599 18 Si 0.750 3.250 19 H -0.210 1.210 20 H -0.238 1.238 21 H -0.182 1.182 22 H 0.062 0.938 23 H 0.101 0.899 24 H 0.058 0.942 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.936 2.812 13.155 15.135 hybrid contribution 0.955 0.060 -1.211 1.543 sum 7.890 2.872 11.945 14.601 Atomic orbital electron populations 1.21754 0.94512 1.01278 1.01318 1.20913 0.94470 0.93992 0.85602 0.94073 1.21944 0.93709 1.01601 0.98338 1.21529 0.98043 0.99974 0.94706 1.22991 0.86906 1.05222 1.01630 0.86787 1.20737 0.92734 0.73267 0.73046 1.93157 1.91253 1.81530 1.50015 1.93164 1.93711 1.77537 1.53274 1.93139 1.86682 1.40840 1.96008 1.21210 0.86216 0.97381 0.94974 1.44525 1.01266 1.66175 1.21360 1.18920 0.95141 1.36368 0.86305 0.90837 1.25825 1.00167 0.99964 0.96385 1.69916 1.43582 1.41161 1.05229 0.86289 0.81234 0.80843 0.76647 1.20990 1.23823 1.18208 0.93794 0.89905 0.94241 0.88062 0.91984 0.90607 0.88799 0.92836 0.94392 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 7.94 71.98 0.57 -3.77 16 2 C 0.15 5.33 3.50 44.97 0.16 5.49 16 3 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 4 C -0.12 -3.08 5.37 30.67 0.16 -2.92 16 5 C -0.11 -2.70 4.93 30.62 0.15 -2.55 16 6 C -0.15 -4.74 2.30 -10.86 -0.02 -4.77 16 7 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 8 C 0.46 14.26 2.69 71.98 0.19 14.45 16 9 F -0.18 -4.95 16.78 44.97 0.75 -4.19 16 10 F -0.20 -6.89 16.91 44.97 0.76 -6.13 16 11 F -0.19 -5.78 16.21 44.97 0.73 -5.05 16 12 C 0.13 5.33 3.20 86.22 0.28 5.61 16 13 N -0.61 -27.02 2.76 -676.06 -1.87 -28.88 16 14 C -0.24 -12.79 9.05 84.03 0.76 -12.03 16 15 H 0.07 4.21 6.37 -2.91 -0.02 4.20 16 16 C -0.03 -1.63 5.24 84.86 0.44 -1.19 16 17 N -0.95 -59.10 13.97 21.65 0.30 -58.80 16 18 Si 0.92 46.40 24.36 68.60 1.67 48.07 16 19 H -0.28 -13.97 6.71 99.48 0.67 -13.30 16 20 H -0.31 -15.91 7.11 99.48 0.71 -15.21 16 21 H -0.26 -12.37 6.48 99.48 0.64 -11.73 16 22 H 0.04 1.56 7.45 -2.39 -0.02 1.54 16 23 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.04 1.48 7.61 -2.39 -0.02 1.46 16 25 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.08 1.89 7.84 -2.39 -0.02 1.87 16 28 H 0.09 1.95 7.77 -2.39 -0.02 1.93 16 29 H 0.05 2.53 4.46 -2.39 -0.01 2.52 16 30 H 0.04 1.58 6.48 -2.39 -0.02 1.56 16 31 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -62.35 252.51 6.08 -56.27 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: 1.03 Total: 0.38 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 2.69 Total: -1.67 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -1.56 Total: -87.68 kcal Atomic # 9 Polarization: -17.61 SS G_CDS: 2.24 Total: -15.37 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.67 Total: 48.07 kcal Total: -62.35 6.08 -56.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611554440.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.719 kcal (2) G-P(sol) polarization free energy of solvation -62.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds