Wall clock time and date at job start Sun Mar 29 2020 22:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.43940 * 2 1 4 4 O 1.33929 * 108.76678 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38468 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98840 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46940 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00116 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47136 * 90.00100 * 16 14 12 18 18 H 1.48499 * 109.47548 * 209.99879 * 16 14 12 19 19 H 1.48499 * 109.47078 * 330.00388 * 16 14 12 20 20 C 1.36549 * 108.02412 * 0.22292 * 5 4 3 21 21 H 1.08999 * 109.47086 * 89.97980 * 1 2 3 22 22 H 1.09002 * 109.46978 * 209.97112 * 1 2 3 23 23 H 1.08995 * 109.47714 * 329.97469 * 1 2 3 24 24 H 1.08005 * 125.61727 * 0.02562 * 3 2 1 25 25 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 26 26 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 27 27 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 28 28 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 29 29 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 30 30 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 31 31 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 32 32 H 0.97000 * 120.00572 * 179.97438 * 15 14 12 33 33 H 1.07999 * 126.64240 * 179.78042 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6680 -0.0015 6 6 4.8379 -1.4939 -0.0029 7 8 4.7472 -2.7075 -0.0041 8 7 6.0521 -0.9089 -0.0028 9 6 7.2627 -1.7339 0.0020 10 6 8.4965 -0.8291 0.0081 11 6 9.7607 -1.6908 0.0136 12 6 10.9760 -0.7996 0.0190 13 1 10.8584 0.2739 0.0189 14 6 12.2380 -1.3548 0.0241 15 7 12.3814 -2.6621 0.0237 16 14 13.7444 -0.2502 0.0314 17 1 14.1375 0.0414 1.4334 18 1 14.8637 -0.9346 -0.6642 19 1 13.4296 1.0209 -0.6689 20 6 2.3408 -1.1291 -0.0066 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8903 0.5134 23 1 -0.3634 0.8897 0.5142 24 1 1.9769 2.1146 0.0004 25 1 6.1245 0.0584 -0.0014 26 1 7.2697 -2.3638 0.8916 27 1 7.2775 -2.3625 -0.8884 28 1 8.4895 -0.1993 -0.8815 29 1 8.4818 -0.2006 0.8985 30 1 9.7675 -2.3204 0.9034 31 1 9.7758 -2.3197 -0.8766 32 1 13.2692 -3.0528 0.0268 33 1 2.0267 -2.1624 -0.0119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718485720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:24 Heat of formation + Delta-G solvation = -45.600757 kcal Electronic energy + Delta-G solvation = -15654.174277 eV Core-core repulsion = 12873.879917 eV Total energy + Delta-G solvation = -2780.294360 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.86065 -39.29700 -35.55328 -34.43866 -33.32221 -31.44024 -30.52382 -27.75485 -26.67261 -23.98009 -22.30130 -21.29033 -20.69436 -19.61328 -17.97200 -16.54375 -16.47493 -16.33147 -15.51049 -15.15614 -14.46216 -13.97343 -13.79372 -13.72641 -13.44138 -13.18792 -12.83309 -12.30124 -11.99836 -11.83974 -11.77557 -10.91270 -10.76914 -10.62431 -10.27769 -9.91034 -9.88781 -9.45223 -9.13533 -9.00963 -8.67606 -8.37748 -6.02351 -4.05506 0.95924 2.11187 2.57851 3.20477 3.30774 3.32745 3.37323 3.40511 4.43873 4.53031 4.55321 4.72747 5.11654 5.30817 5.33504 5.41068 5.53257 5.64992 5.70628 5.73845 5.77602 6.12448 6.18646 6.35477 6.56841 6.63885 6.81201 6.97116 7.59063 7.62620 7.74834 7.96194 8.16948 8.37445 9.01099 9.58774 11.08982 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.065409 B = 0.003554 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.974000 B = 7876.984241 C = 8273.894400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.196 4.196 3 C -0.014 4.014 4 O -0.161 6.161 5 C -0.068 4.068 6 C 0.595 3.405 7 O -0.524 6.524 8 N -0.713 5.713 9 C 0.114 3.886 10 C -0.122 4.122 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.124 4.124 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.208 0.792 25 H 0.404 0.596 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.261 0.739 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.689 7.707 -0.063 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.197 4.197 3 C -0.084 4.084 4 O -0.057 6.057 5 C -0.120 4.120 6 C 0.380 3.620 7 O -0.402 6.402 8 N -0.362 5.362 9 C -0.008 4.008 10 C -0.160 4.160 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.145 4.145 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.225 0.775 25 H 0.238 0.762 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -21.297 6.859 -0.070 22.375 hybrid contribution 0.764 0.995 0.014 1.254 sum -20.534 7.854 -0.056 21.985 Atomic orbital electron populations 1.20173 0.88679 1.02809 1.02285 1.20488 0.97680 0.92474 1.09055 1.24177 0.80021 0.99996 1.04189 1.84072 1.29285 1.21814 1.70479 1.22260 0.96428 0.80440 1.12883 1.16611 0.81420 0.86416 0.77579 1.90883 1.86004 1.12243 1.51102 1.46158 1.05776 1.11132 1.73144 1.21770 0.82405 0.94180 1.02412 1.21908 0.94301 0.98665 1.01077 1.19033 0.89762 0.94856 0.97727 1.21204 0.90913 0.93031 1.50966 0.92617 1.25029 0.99185 0.94995 0.95256 1.69962 1.22990 1.09797 1.50548 0.86574 0.82554 0.80641 0.78105 1.20652 1.21197 1.19882 1.21838 0.90582 1.00561 1.01524 0.91302 0.91289 0.91502 0.77543 0.76173 0.91289 0.91279 0.92575 0.92588 0.96200 0.96190 0.92904 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.39 36.01 0.37 -0.15 16 2 C -0.20 -1.85 6.14 -104.93 -0.64 -2.50 16 3 C -0.01 -0.12 12.00 29.63 0.36 0.23 16 4 O -0.16 -1.89 10.40 5.01 0.05 -1.84 16 5 C -0.07 -0.92 7.13 -36.79 -0.26 -1.18 16 6 C 0.59 9.61 7.79 -12.86 -0.10 9.51 16 7 O -0.52 -10.09 16.86 5.20 0.09 -10.01 16 8 N -0.71 -10.94 5.55 -61.62 -0.34 -11.28 16 9 C 0.11 2.04 5.67 -4.04 -0.02 2.01 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 16 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.12 -1.50 10.57 -39.39 -0.42 -1.91 16 21 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 22 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.21 0.94 8.06 -52.48 -0.42 0.51 16 25 H 0.40 5.30 8.23 -40.82 -0.34 4.96 16 26 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 295.13 15.07 4.45 4.45 Total: -1.00 -32.47 295.13 -5.97 -38.44 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.53 Total: -0.67 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.41 Total: -9.47 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.39 Total: -37.41 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.14 Total: -11.84 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.47 -5.97 -38.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718485720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.159 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds